Orthologous regulated operons containing ccmF gene

Properties
Regulog:	Fnr - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Energy metabolism; Anaerobic metabolism
Effector:	Oxygen
Phylum:	Gammaproteobacteria

Built upon 685 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Citrobacter koseri ATCC BAA-895
Position: -19 Score: 3.29 Sequence: TTTATAAGGATAAA Locus tag: CKO_00581 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: CKO_00582 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: CKO_00583 Name: null Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmF-ccmG-CKO_00583	-19	3.3	TTTATAAGGATAAA	CKO_00581
Edwardsiella tarda EIB202
Position: -114 Score: 3.52 Sequence: TTATTGTATATAAA Locus tag: ETAE_2459 Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: ETAE_2458 Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: ETAE_2457 Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone Locus tag: ETAE_2456 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: ETAE_2455 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: ETAE_2454 Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH Locus tag: ETAE_2453 Name: ccmI Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmI	-114	3.5	TTATTGTATATAAA	ETAE_2459
Erwinia carotovora subsp. atroseptica SCRI1043
Position: -106 Score: 4.4 Sequence: TTGATCTCAATAAA Locus tag: ECA1882 Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Locus tag: ECA1883 Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit Locus tag: ECA1884 Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: ECA1885 Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: ECA1886 Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone Locus tag: ECA1887 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: ECA1888 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: ECA1889 Name: ccmH1 Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH Locus tag: ECA1890 Name: ccmH2 Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH1-ccmH2	-106	4.4	TTGATCTCAATAAA	ECA1882
Escherichia coli str. K-12 substr. MG1655
Position: -46 Score: 3.24 Sequence: TTGGTCGCTCTCAA Locus tag: b2208 Name: napF Funciton: Ferredoxin-type protein NapF (periplasmic nitrate reductase) Locus tag: b2207 Name: napD Funciton: Periplasmic nitrate reductase component NapD Locus tag: b2206 Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: b2205 Name: napG Funciton: Ferredoxin-type protein NapG (periplasmic nitrate reductase) Locus tag: b2204 Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase) Locus tag: b2203 Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit Locus tag: b2202 Name: napC Funciton: Cytochrome c-type protein NapC Locus tag: b2201 Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Locus tag: b2200 Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit Locus tag: b2199 Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: b2198 Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: b2197 Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone Locus tag: b2196 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: b2195 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: b2194 Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
napF-napD-napA-napG-napH-napB-napC-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH	-46	3.2	TTGGTCGCTCTCAA	b2208
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Position: -326 Score: 3.37 Sequence: GTGATACAAGTCAC Locus tag: KPN_02084 Name: null Funciton: hypothetical protein Locus tag: KPN_02083 Name: null Funciton: Monooxygenase, FAD-binding; Glucose-methanol-choline oxidoreductase Locus tag: KPN_02082 Name: null Funciton: gluconate dehydrogenase cytochrome c subunit, putative Locus tag: KPN_02081 Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Locus tag: KPN_02080 Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit Locus tag: KPN_02079 Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: KPN_02078 Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: KPN_02077 Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone Locus tag: KPN_02076 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: KPN_02075 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: KPN_02074 Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH Locus tag: KPN_02073 Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
KPN_02084-KPN_02083-KPN_02082-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH	-326	3.4	GTGATACAAGTCAC	KPN_02084
Salmonella typhimurium LT2
Position: -110 Score: 4.72 Sequence: TTGATACCAATCAA Locus tag: STM3820 Name: null Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5) Locus tag: STM3819 Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Locus tag: STM3818 Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit Locus tag: STM3817 Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: STM3816 Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: STM3815 Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone Locus tag: STM3814 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: STM3813 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: STM3812 Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
STM3820-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH	-110	4.7	TTGATACCAATCAA	STM3820
Yersinia pestis KIM
Position: -302 Score: 3.97 Sequence: TGGATTTTTAACAA Locus tag: y1567 Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Locus tag: y1568 Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit Locus tag: y1569 Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: y1570 Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: y1571 Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone Locus tag: y1572 Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF Locus tag: y1573 Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase Locus tag: y1574 Name: null Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-y1574	-302	4	TGGATTTTTAACAA	y1567

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Orthologous regulated operons containing ccmF gene

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --