Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing grdB gene

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium botulinum A str. ATCC 3502
Position: -239
Score: 20.82
Sequence: TATCCTTATAGGATA...
Position: -159
Score: 38.94
Sequence: GACAAAACTCTGGAA...
Locus tag: CBO1255
Name: grdX
Funciton: putative glycine reductase complex component
Locus tag: CBO1256
Name: grdE
Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: CBO1257
Name: grdB
Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CBO1259
Name: trxB
Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: CBO1260
Name: trxA
Funciton: Thioredoxin
Locus tag: CBO1261
Name: grdA
Funciton: Glycine reductase complex protein A
Locus tag: CBO1263
Name: grdC
Funciton: Glycine reductase component C chain 1
Locus tag: CBO1264
Name: grdD
Funciton: Glycine reductase component C chain 2
grdX-grdE-grdB-trxB-trxA-grdA-grdC-grdD -239 20.8 TATCCTTATAGGATA... CBO1255
-159 38.9 GACAAAACTCTGGAA...
Clostridium hiranonis DSM 13275
Position: -185
Score: 33.99
Sequence: TGAAGCGTATAGGAG...
Locus tag: CLOHIR_00161
Name: grdX
Funciton: putative glycine reductase complex component
Locus tag: CLOHIR_00162
Name: trxB
Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: CLOHIR_00163
Name: trxA
Funciton: Thioredoxin
Locus tag: CLOHIR_00164
Name: grdE
Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: CLOHIR_00165
Name: grdA
Funciton: Glycine reductase complex protein A
Locus tag: CLOHIR_00166
Name: grdA
Funciton: Glycine reductase complex protein A
Locus tag: CLOHIR_00167
Name: grdB
Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOHIR_00168
Name: grdB
Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOHIR_00169
Name: grdC
Funciton: Glycine reductase component C chain 1
Locus tag: CLOHIR_00170
Name: grdD
Funciton: Glycine reductase component C chain 2
grdX-trxB-trxA-grdE-grdA-grdA-grdB-grdB-grdC-grdD -185 34 TGAAGCGTATAGGAG... CLOHIR_00161
Clostridium scindens ATCC 35704
Position: -205
Score: 58.51
Sequence: ATGATGTTTCTCAAG...
Locus tag: CLOSCI_00776
Name: grdX
Funciton: putative glycine reductase complex component
Locus tag: CLOSCI_00775
Name: grdE
Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: CLOSCI_00774
Name: grdB
Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOSCI_00773
Name: grdB
Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOSCI_00772
Name: trxB
Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: CLOSCI_00771
Name: trxA
Funciton: Thioredoxin
Locus tag: CLOSCI_00770
Name: grdA
Funciton: Glycine reductase complex protein A
Locus tag: CLOSCI_00769
Name: grdA
Funciton: Glycine reductase complex protein A
Locus tag: CLOSCI_00768
Name: grdC
Funciton: Glycine reductase component C chain 1
Locus tag: CLOSCI_00767
Name: grdD
Funciton: Glycine reductase component C chain 2
grdX-grdE-grdB-grdB-trxB-trxA-grdA-grdA-grdC-grdD -205 58.5 ATGATGTTTCTCAAG... CLOSCI_00776
Clostridium sp. OhILAs
Position: -298
Score: 52.62
Sequence: AGAAGAGTGCGGGAG...
Position: -194
Score: 40.5
Sequence: GACGGTACTCTGAAA...
Locus tag: Clos_0953
Name: grdX
Funciton: putative glycine reductase complex component
Locus tag: Clos_0954
Name: trxB
Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: Clos_0955
Name: trxA
Funciton: Thioredoxin
Locus tag: Clos_0956
Name: grdE
Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: Clos_0957
Name: grdA
Funciton: Glycine reductase complex protein A
Locus tag: Clos_0958
Name: grdB
Funciton: Glycine reductase complex component B gamma subunit
Locus tag: Clos_0959
Name: grdC
Funciton: Glycine reductase component C chain 1
Locus tag: Clos_0960
Name: grdD
Funciton: Glycine reductase component C chain 2
grdX-trxB-trxA-grdE-grdA-grdB-grdC-grdD -298 52.6 AGAAGAGTGCGGGAG... Clos_0953
-194 40.5 GACGGTACTCTGAAA...