Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rpsI gene

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Thermotogae
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Thermosipho africanus TCF52B
Position: -98
Score: 19.34
Sequence: TCTTAGGTTATAGTC...
Locus tag: THA_1316
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: THA_1315
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: THA_1314
Name: rpmA
Funciton: LSU ribosomal protein L27p
Locus tag: THA_1313
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
Locus tag: THA_1312
Name: rplM
Funciton: LSU ribosomal protein L13p (L13Ae)
Locus tag: THA_1311
Name: rpsI
Funciton: SSU ribosomal protein S9p (S16e)
rplU-ysxB-rpmA-ribU-rplM-rpsI -98 19.3 TCTTAGGTTATAGTC... THA_1316
Thermosipho melanesiensis BI429
Position: -95
Score: 16.46
Sequence: CTTAAGGTTATAGTC...
Locus tag: Tmel_1036
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: Tmel_1035
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: Tmel_1034
Name: rpmA
Funciton: LSU ribosomal protein L27p
Locus tag: Tmel_1033
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
Locus tag: Tmel_1032
Name: rplM
Funciton: LSU ribosomal protein L13p (L13Ae)
Locus tag: Tmel_1031
Name: rpsI
Funciton: SSU ribosomal protein S9p (S16e)
rplU-ysxB-rpmA-ribU-rplM-rpsI -95 16.5 CTTAAGGTTATAGTC... Tmel_1036
Thermotoga lettingae TMO
Position: -95
Score: 23.8
Sequence: AGTATTTACACAAGC...
Locus tag: Tlet_1979
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: Tlet_1978
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: Tlet_1977
Name: rpmA
Funciton: LSU ribosomal protein L27p
Locus tag: Tlet_1976
Name: rplM
Funciton: LSU ribosomal protein L13p (L13Ae)
Locus tag: Tlet_1975
Name: rpsI
Funciton: SSU ribosomal protein S9p (S16e)
rplU-ysxB-rpmA-rplM-rpsI -95 23.8 AGTATTTACACAAGC... Tlet_1979
Thermotoga neapolitana DSM 4359
Position: -7
Score: 19.27
Sequence: GCTTGAAGTGCGTCG...
Locus tag: CTN_1035
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CTN_1036
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CTN_1037
Name: rpmA
Funciton: LSU ribosomal protein L27p
Locus tag: CTN_1038
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
Locus tag: CTN_1039
Name: rplM
Funciton: LSU ribosomal protein L13p (L13Ae)
Locus tag: CTN_1040
Name: rpsI
Funciton: SSU ribosomal protein S9p (S16e)
rplU-ysxB-rpmA-ribU-rplM-rpsI -7 19.3 GCTTGAAGTGCGTCG... CTN_1035