Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing Rv2004c gene

Properties
Regulog: DosR - Actinomycetales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator
Biological process: Dormancy
Effector: Oxygen; Carbon monoxide; Nitric oxide
Phylum: Actinobacteria
Built upon 299 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Mycobacterium abscessus ATCC 19977
Position: -117
Score: 4.51
Sequence: CAGGGCCCTTGGTCACCG
Position: -96
Score: 3.88
Sequence: AGGGGCCCGAAGTCACCG
Position: -31
Score: 3.74
Sequence: TGGTGACTTCGGTCCCAC
Locus tag: MAB_3902c
Name: Rv2004c
Funciton: hypothetical protein
Rv2004c -117 4.5 CAGGGCCCTTGGTCACCG MAB_3902c
-96 3.9 AGGGGCCCGAAGTCACCG
-31 3.7 TGGTGACTTCGGTCCCAC
Mycobacterium bovis AF2122/97
Position: -70
Score: 3.45
Sequence: TGGGGACTAAAGCCTCAT
Locus tag: Mb2028c
Name: Rv2005c
Funciton: universal stress protein
Locus tag: Mb2027c
Name: Rv2004c
Funciton: hypothetical protein
Locus tag: Mb2026c
Name: Rv2003c
Funciton: hypothetical protein
Rv2005c-Rv2004c-Rv2003c -70 3.5 TGGGGACTAAAGCCTCAT Mb2028c
Mycobacterium marinum M
Position: -289
Score: 3.42
Sequence: CCGGGACCGCTGGCCTGC
Position: -214
Score: 4.58
Sequence: CAGGGCCGTTTGGCCCCG
Locus tag: MMAR_3477
Name: MAV_2507
Funciton: universal stress protein
Locus tag: MMAR_3476
Name: Rv2004c
Funciton: hypothetical protein
MAV_2507-Rv2004c -289 3.4 CCGGGACCGCTGGCCTGC MMAR_3477
-214 4.6 CAGGGCCGTTTGGCCCCG
Mycobacterium smegmatis str. MC2 155
Position: -73
Score: 4.77
Sequence: CAGGGACTATGGTCCTCA
Position: -52
Score: 4.46
Sequence: GGGGGCCGTAGGACCCTG
Locus tag: MSMEG_3942
Name: Rv2004c
Funciton: hypothetical protein
Rv2004c -73 4.8 CAGGGACTATGGTCCTCA MSMEG_3942
-52 4.5 GGGGGCCGTAGGACCCTG
Mycobacterium sp. MCS
Position: -37
Score: 3.46
Sequence: AAGAGTCTTTGGTCACAC
Locus tag: Mmcs_1074
Name: Rv2004c
Funciton: hypothetical protein
Locus tag: Mmcs_1073
Name: Mmcs_1073
Funciton: alcohol dehydrogenase GroES-like protein
Locus tag: Mmcs_1072
Name: usp
Funciton: universal stress protein
Rv2004c-Mmcs_1073-usp -37 3.5 AAGAGTCTTTGGTCACAC Mmcs_1074
Mycobacterium tuberculosis H37Rv
Position: -70
Score: 3.45
Sequence: TGGGGACTAAAGCCTCAT
Locus tag: Rv2005c
Name: Rv2005c
Funciton: universal stress protein
Locus tag: Rv2004c
Name: Rv2004c
Funciton: hypothetical protein
Locus tag: Rv2003c
Name: Rv2003c
Funciton: hypothetical protein
Rv2005c-Rv2004c-Rv2003c -70 3.5 TGGGGACTAAAGCCTCAT Rv2005c
Mycobacterium vanbaalenii PYR-1
Position: -74
Score: 4.54
Sequence: CAGGGCCAATGGTCCTCA
Locus tag: Mvan_1384
Name: Rv2004c
Funciton: hypothetical protein
Rv2004c -74 4.5 CAGGGCCAATGGTCCTCA Mvan_1384
Rhodococcus sp. RHA1
Position: -79
Score: 4.29
Sequence: CGAGGACCAAAGGCTCTG
Locus tag: RHA1_ro00054
Name: Mmcs_1106
Funciton: GCN5-related N-acetyltransferase
Locus tag: RHA1_ro00055
Name: Rv2004c
Funciton: hypothetical protein
Locus tag: RHA1_ro00056
Name: pfkB
Funciton: probable phosphofructokinase
Mmcs_1106-Rv2004c-pfkB -79 4.3 CGAGGACCAAAGGCTCTG RHA1_ro00054
Saccharopolyspora erythraea NRRL 2338
Position: -474
Score: 3.85
Sequence: TCGGGCACGTGGGCCCCG
Position: -90
Score: 4.1
Sequence: GGTGGCCGTTGGTCCCTG
Locus tag: SACE_2453
Name: Rv2004c
Funciton: hypothetical protein
Rv2004c -474 3.8 TCGGGCACGTGGGCCCCG SACE_2453
-90 4.1 GGTGGCCGTTGGTCCCTG
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