# TF - SdhR: Bpet1819
>Bpet3251(aceA) Score=5.3 Pos=-126 [Bordetella petrii DSM 12804]
TTTTTAGTCTTATATAAGAGAAGTGG
>Bpet1818(mdh) Score=7.8 Pos=-162 [Bordetella petrii DSM 12804]
TCTTATGTCTTATATAAGATATAAGA
>Bpet1819(sdhR) Score=7.8 Pos=-35 [Bordetella petrii DSM 12804]
TCTTATATCTTATATAAGACATAAGA
>Bpet3365(acnA) Score=5.8 Pos=-133 [Bordetella petrii DSM 12804]
AGCCAAGTCTTACATAAGATATAAGA
>Bpet3354(acnB) Score=6.6 Pos=-105 [Bordetella petrii DSM 12804]
ACCCAAGTCTTATATAAGATATAAGA
# TF - ModE: Bpet3267
>Bpet0724(modA) Score=7 Pos=-51 [Bordetella petrii DSM 12804]
TTCGTTATATAGTTCAGTTTATAGCGAG
# TF - PrpR: Bpet1813
>Bpet1812(prpD) Score=3.7 Pos=-170 [Bordetella petrii DSM 12804]
CATGTTGACAAT
>Bpet1813(prpR) Score=5 Pos=-72 [Bordetella petrii DSM 12804]
ATTGTCGACAAT
>Bpet1813(prpR) Score=3.7 Pos=-9 [Bordetella petrii DSM 12804]
ATTGTCAACATG
>Bpet1812(prpD) Score=5 Pos=-107 [Bordetella petrii DSM 12804]
ATTGTCGACAAT
# TF - GlcC: Bpet4865
>Bpet4866(glcB) Score=5.1 Pos=-219 [Bordetella petrii DSM 12804]
ACTGGTATGACCAGA
>Bpet2736(glcD1) Score=4.6 Pos=-97 [Bordetella petrii DSM 12804]
GCTGGTAAGACCATG
>Bpet4866(glcB) Score=5.4 Pos=-110 [Bordetella petrii DSM 12804]
ACTGGTATGACCAGG
>Bpet4865(glcC) Score=5.4 Pos=-133 [Bordetella petrii DSM 12804]
CCTGGTCATACCAGT
>Bpet4865(glcC) Score=5.1 Pos=-24 [Bordetella petrii DSM 12804]
TCTGGTCATACCAGT
# TF - BAV2585: Bpet0292
>Bpet0294(ucaB) Score=5.2 Pos=-27 [Bordetella petrii DSM 12804]
ACTTGTATACAAGC
>Bpet0295(urtA) Score=5.2 Pos=-442 [Bordetella petrii DSM 12804]
GCTTGTATACAAGT
>Bpet0288(BAV0996) Score=4.7 Pos=-153 [Bordetella petrii DSM 12804]
GCTGGTGTACAAGT
# TF - NrdR: Bpet0615
>Bpet0583(nrdA) Score=5.5 Pos=-186 [Bordetella petrii DSM 12804]
TCACTAGAATTAGTGC
>Bpet0583(nrdA) Score=5.6 Pos=-155 [Bordetella petrii DSM 12804]
ACACTATATGTAGTGG
# TF - Bpet4349: Bpet4349
>Bpet4350(sgaA) Score=4.5 Pos=-209 [Bordetella petrii DSM 12804]
CATTTGTATACAAACA
>Bpet4350(sgaA) Score=5.4 Pos=-32 [Bordetella petrii DSM 12804]
ATTTTGTATACCAAAT
>Bpet4349(Bpet4349) Score=4.5 Pos=-13 [Bordetella petrii DSM 12804]
TGTTTGTATACAAATG
>Bpet4349(Bpet4349) Score=5.4 Pos=-190 [Bordetella petrii DSM 12804]
ATTTGGTATACAAAAT
# TF - PdxW: Bpet2921
>Bpet2920(PF00583) Score=13.1 Pos=-107 [Bordetella petrii DSM 12804]
CATGGCACCAC-(13)-TCTGGTGCTTT-(2)-AGCATGCCACG
# TF - FdsR: Bpet3682
>Bpet3683(fdsG) Score=6.1 Pos=-95 [Bordetella petrii DSM 12804]
ATATGTTTTTAACAGCATAT
>Bpet3682(fdsR) Score=6.1 Pos=-88 [Bordetella petrii DSM 12804]
ATATGCTGTTAAAAACATAT
>Bpet3683(fdsG) Score=5.8 Pos=-172 [Bordetella petrii DSM 12804]
ATATGTCATTAATTTCTTAT
# TF - ModE3: Bpet4656
>Bpet4663(fdoX) Score=6.2 Pos=-2 [Bordetella petrii DSM 12804]
GTATGCAAAGCATTTCATAT
>Bpet4655(tupA) Score=6.1 Pos=-74 [Bordetella petrii DSM 12804]
CTATGCAAAGTTATTCATAT
>Bpet4656(modE3) Score=6.1 Pos=-67 [Bordetella petrii DSM 12804]
ATATGAATAACTTTGCATAG
# TF - HrcA: Bpet1552
>Bpet3931(groS) Score=7.9 Pos=-90 [Bordetella petrii DSM 12804]
TTAGCACTCGCTGCCGGTGAGTGCTAA
>Bpet0159(rpoH) Score=7.1 Pos=-72 [Bordetella petrii DSM 12804]
TTAGCACTCGCACATAGAGAGTGCTAA
# TF - LexA: Bpet2782
>Bpet2611(imuA) Score=6.3 Pos=60 [Bordetella petrii DSM 12804]
TACTGTATATTTGTACAGTA
>Bpet3400(uvrD) Score=5.6 Pos=-6 [Bordetella petrii DSM 12804]
GTCTGGATGAATATACAGTA
>Bpet0873(uvrA) Score=5.7 Pos=-180 [Bordetella petrii DSM 12804]
TACTGTTTATATATACAGAT
>Bpet2056(recA) Score=6 Pos=-136 [Bordetella petrii DSM 12804]
TACTGGATTTTTATCCAGTA
>Bpet1911(PF4055) Score=5.6 Pos=-25 [Bordetella petrii DSM 12804]
TACTGGTTTTTTGTACAGTA
>Bpet2782(lexA) Score=5.5 Pos=-39 [Bordetella petrii DSM 12804]
TGCTGTATATCCATACAGTC
# TF - Bpet3002: Bpet3002
>Bpet3003(COG1917) Score=8.5 Pos=-91 [Bordetella petrii DSM 12804]
TTGTAGTACA--------------TTTTGGTGCT
# TF - GabR: Bpet3402, Bpet3078
>Bpet3079(dppA) Score=10.3 Pos=-285 [Bordetella petrii DSM 12804]
GTGGCAC-(17)-TTGGACC-(8)-GTACCAA
>Bpet3403(gabT) Score=11.8 Pos=-143 [Bordetella petrii DSM 12804]
TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT
# TF - OapR: Bpet4036
>Bpet4037(oapT) Score=14.2 Pos=-168 [Bordetella petrii DSM 12804]
ATCAATACAGTA-(11)-ACCTGTACAGTT-(15)-GATTGTATATTT
# TF - BAV2922: Bpet0647
>Bpet0646(PF00892) Score=18.8 Pos=-131 [Bordetella petrii DSM 12804]
TAACTGTCATG-(10)-CAGGCCAGTAA-(15)-AAAGTGTACCG-(0)-GTACTGTACTG
# TF - PdxQ: Bpet0243
>Bpet0244(pdxO2) Score=13.7 Pos=-108 [Bordetella petrii DSM 12804]
ATCTGGCCCAT-(13)-AACTGGTTCTT-(4)-TTGTGCCTGTT
# TF - BAV2320: Bpet2044
>Bpet2044(BAV2320) Score=14.2 Pos=-119 [Bordetella petrii DSM 12804]
ACAGACACACCGTT-(11)-ACCGCAACAGACAA-(8)-TCATCTGTTATGGT-(11)-AGAACTGTGCCTTA
>Bpet2046(BAV2318) Score=18.1 Pos=-666 [Bordetella petrii DSM 12804]
TAAGGCACAGTTCT-(11)-ACCATAACAGATGA-(8)-TTGTCTGTTGCGGT-(11)-AACGGTGTGTCTGT
# TF - Bpet3338: Bpet3338
>Bpet3338(Bpet3338) Score=9.2 Pos=-77 [Bordetella petrii DSM 12804]
AGGTACAGT------------------ACTGTCCCA
>Bpet3339(fcbT1) Score=9.2 Pos=-133 [Bordetella petrii DSM 12804]
TGGGACAGT------------------ACTGTACCT
# TF - UxuR2: Bpet2346, Bpet3949
>Bpet3949(uxuR2-2) Score=5.1 Pos=-40 [Bordetella petrii DSM 12804]
AAAGTGGTAAGGCCACTTT
>Bpet3950(dgkA) Score=5.1 Pos=-151 [Bordetella petrii DSM 12804]
AAAGTGGCCTTACCACTTT
>Bpet2346(uxuR2) Score=4.7 Pos=-40 [Bordetella petrii DSM 12804]
TCAGTGGCCTGACCACTAG
>Bpet2347 Score=4.7 Pos=-138 [Bordetella petrii DSM 12804]
CTAGTGGTCAGGCCACTGA
# TF - MlnR: Bpet3277
>Bpet3277(mlnR) Score=5.4 Pos=-43 [Bordetella petrii DSM 12804]
TTTCCTATAATTATGAATTA
# TF - MetR: Bpet2058
>Bpet2059(metE) Score=4.7 Pos=-106 [Bordetella petrii DSM 12804]
ATGAATAAATCTCAA
>Bpet2059(metE) Score=5.2 Pos=0 [Bordetella petrii DSM 12804]
ATGACTATTACTCAT
>Bpet2058(metR) Score=5.2 Pos=-173 [Bordetella petrii DSM 12804]
ATGAGTAATAGTCAT
>Bpet2058(metR) Score=4.7 Pos=-67 [Bordetella petrii DSM 12804]
TTGAGATTTATTCAT
>Bpet0614(glyA) Score=5.1 Pos=-190 [Bordetella petrii DSM 12804]
TTGAATATTCCTCAA