# TF - CymR: BPUM_2393
>BPUM_2363(yrrT) Score=5.4 Pos=-51 [Bacillus pumilus SAFR-032]
TAAAACATACTATACGCATAGGAATAA
>BPUM_0345(yxeK) Score=5.5 Pos=-84 [Bacillus pumilus SAFR-032]
TAAAACCGATTAATTCAATCAGAAAAA
>BPUM_2341(ydbM) Score=5.5 Pos=-89 [Bacillus pumilus SAFR-032]
TAAATCCTATAAGTAAAGTGTGTTTTA
>BPUM_2341(ydbM) Score=4.9 Pos=-61 [Bacillus pumilus SAFR-032]
TTATTCCGATTGGAAAAATCAGATATG
>BPUM_0057(cysK) Score=4.6 Pos=-40 [Bacillus pumilus SAFR-032]
TtAaTaCaATaAAATTAcTcGGAgaTA
# TF - Zur: BPUM_2241
>BPUM_2243(znuC) Score=5.4 Pos=-46 [Bacillus pumilus SAFR-032]
TAAATCGTAATCATTCTTTTTAT
>BPUM_3311(yciC) Score=6.6 Pos=-69 [Bacillus pumilus SAFR-032]
CAAATCGTAATCATTACTTTTTA
>BPUM_3310(rpmGA1) Score=6.5 Pos=-42 [Bacillus pumilus SAFR-032]
CAAATCGTAACCATTACGAATTA
>BPUM_2709(rpmE2) Score=6.5 Pos=-44 [Bacillus pumilus SAFR-032]
TAAAGCGTAATGATTACGTTTTG
>BPUM_2707(ytiB) Score=6.5 Pos=-151 [Bacillus pumilus SAFR-032]
TGTATCGTAATAATTACGATTTG
>BPUM_2707(ytiB) Score=6.1 Pos=-188 [Bacillus pumilus SAFR-032]
TAGATAGAAATGATTACGATTTA
# TF - YtrA: BPUM_2677
>BPUM_2677(ytrA) Score=6.4 Pos=-234 [Bacillus pumilus SAFR-032]
TGTACTACATCAACTAATACA
# TF - XylR: BPUM_1830
>BPUM_1832(xynP) Score=6.1 Pos=-231 [Bacillus pumilus SAFR-032]
AGTTTGTTTGGTCAATAAACTAAGA
>BPUM_1830(xylR) Score=5.9 Pos=-191 [Bacillus pumilus SAFR-032]
ACTTTGTAAGTTGATTCAACAAACT
>BPUM_1829(xylA) Score=5.9 Pos=-47 [Bacillus pumilus SAFR-032]
AGTTTGTTGAATCAACTTACAAAGT
# TF - TreR: BPUM_0730
>BPUM_0728(treP) Score=6.8 Pos=-63 [Bacillus pumilus SAFR-032]
AAACATGTATATACAAGTTT
>BPUM_0728(treP) Score=5 Pos=-95 [Bacillus pumilus SAFR-032]
CTACATGTATATACAAATAT
# TF - Rex: BPUM_0528
>BPUM_1837(yndG) Score=5.5 Pos=-35 [Bacillus pumilus SAFR-032]
TATGTGAAACAATTCACATA
>BPUM_0277(ldh) Score=5.7 Pos=-56 [Bacillus pumilus SAFR-032]
AATGTGAAATACTTCACATA
>BPUM_0277(ldh) Score=6.3 Pos=-79 [Bacillus pumilus SAFR-032]
TTTGTGAAGTATTGCACAAT
>BPUM_3519(cydA) Score=4.8 Pos=-68 [Bacillus pumilus SAFR-032]
TTTGTGAAGTGGTGAGCATA
>BPUM_3519(cydA) Score=5.6 Pos=-98 [Bacillus pumilus SAFR-032]
TTTGTGAACCATTGAACAAA
# TF - PerR: BPUM_0827
>BPUM_1275(zosA) Score=4.5 Pos=-36 [Bacillus pumilus SAFR-032]
TGAAAATCATTATCA
>BPUM_1275(zosA) Score=5.6 Pos=-156 [Bacillus pumilus SAFR-032]
TTATAATAATTATTA
>BPUM_1275(zosA) Score=4.8 Pos=-179 [Bacillus pumilus SAFR-032]
TGATAATTATTATCA
>BPUM_1077(spxA) Score=4.9 Pos=-65 [Bacillus pumilus SAFR-032]
TTAGAACAATTTTAA
>BPUM_1077(spxA) Score=4.8 Pos=-91 [Bacillus pumilus SAFR-032]
GTATAATCACTATAA
>BPUM_2058(ypzK) Score=4.8 Pos=-85 [Bacillus pumilus SAFR-032]
TAAAAATGTTTATAA
>BPUM_0827(perR) Score=5.4 Pos=-50 [Bacillus pumilus SAFR-032]
TTATAAAGATTATAA
>BPUM_2458(hemA) Score=5.5 Pos=-49 [Bacillus pumilus SAFR-032]
TTGTAATTATTATAA
>BPUM_2458(hemA) Score=5.9 Pos=-79 [Bacillus pumilus SAFR-032]
TTATAATCATTATAA
>BPUM_2084(fur) Score=5.3 Pos=-76 [Bacillus pumilus SAFR-032]
TTAAAATGATTATAG
>BPUM_2084(fur) Score=5 Pos=-116 [Bacillus pumilus SAFR-032]
TTATAATCGTTATTA
# TF - NtdR: BPUM_0279
>BPUM_0280(ntdA) Score=5.6 Pos=-78 [Bacillus pumilus SAFR-032]
CTGAAATCGATAACAT
>BPUM_0279(ntdR) Score=5.6 Pos=-47 [Bacillus pumilus SAFR-032]
ATGTTATCGATTTCAG
>BPUM_0279(ntdR) Score=4.8 Pos=-366 [Bacillus pumilus SAFR-032]
ATGTCATCGATCTCAT
# TF - NiaR: BPUM_2429
>BPUM_2427(nadB) Score=5.9 Pos=-38 [Bacillus pumilus SAFR-032]
GATATGTGTCAAGACAGGTGTA
# TF - MtlR: BPUM_0388
>BPUM_0369(mtlA) Score=8.1 Pos=-156 [Bacillus pumilus SAFR-032]
TTGTCACA-----AGTGACAA
>BPUM_0388(mtlR) Score=7.6 Pos=-111 [Bacillus pumilus SAFR-032]
TTGTCACA-----TGTGCCAA
# TF - MntR: BPUM_2184
>BPUM_0413(mntH) Score=5.8 Pos=-63 [Bacillus pumilus SAFR-032]
AAAATTGCATCAAGGAAACATT
>BPUM_3011(mntB) Score=5.8 Pos=-119 [Bacillus pumilus SAFR-032]
AAAGTTTCCCTAAGGAAACAAA
# TF - LicR: BPUM_3541, BPUM_3507
>BPUM_3506(licB) Score=5.7 Pos=-105 [Bacillus pumilus SAFR-032]
TTTCCGCTTCCTAAAGGAAAA
# TF - LexA: BPUM_1686
>BPUM_2102(yqjW) Score=4.9 Pos=-29 [Bacillus pumilus SAFR-032]
CAGAACATACGTTCTA
>BPUM_2062(ypuD) Score=4 Pos=-169 [Bacillus pumilus SAFR-032]
AAGAACGCATATTCGT
>BPUM_1688(yneB) Score=4 Pos=-362 [Bacillus pumilus SAFR-032]
ACGAACACACATTCTA
>BPUM_1688(yneB) Score=4.4 Pos=-401 [Bacillus pumilus SAFR-032]
AGAAACGTTTGTTCGT
>BPUM_1688(yneB) Score=5.1 Pos=-431 [Bacillus pumilus SAFR-032]
ACAAACATAGGTTCGA
>BPUM_0989(yhjD) Score=4.5 Pos=-34 [Bacillus pumilus SAFR-032]
AAGAACGTGTGTTCTA
>BPUM_1157(xkdA) Score=5.2 Pos=-30 [Bacillus pumilus SAFR-032]
TAGAACATACGTTTGT
>BPUM_2506(uvrC) Score=5.2 Pos=-62 [Bacillus pumilus SAFR-032]
TAAAACAAATGTTCGT
>BPUM_3148(uvrB) Score=4.9 Pos=-82 [Bacillus pumilus SAFR-032]
CCGAACTTTAGTTCGT
>BPUM_2304(sda) Score=4.4 Pos=-145 [Bacillus pumilus SAFR-032]
CAGAACGATTGTTCTT
>BPUM_1598(recA) Score=5.2 Pos=-88 [Bacillus pumilus SAFR-032]
TCGAATATGTGTTCGT
>BPUM_1709(parE) Score=4.8 Pos=-246 [Bacillus pumilus SAFR-032]
TAGAACATTTGTTCTG
>BPUM_1686(lexA) Score=5.1 Pos=-73 [Bacillus pumilus SAFR-032]
TCGAACCTATGTTTGT
>BPUM_1686(lexA) Score=4.4 Pos=-103 [Bacillus pumilus SAFR-032]
ACGAACAAACGTTTCT
>BPUM_1686(lexA) Score=4.6 Pos=-142 [Bacillus pumilus SAFR-032]
TAGAATGTGTGTTCGT
>BPUM_2010(hupA) Score=3.9 Pos=-241 [Bacillus pumilus SAFR-032]
ACGAATAAGGATTCTT
>BPUM_2010(hupA) Score=4.4 Pos=-277 [Bacillus pumilus SAFR-032]
AGGAATATTCGTTCGC
>BPUM_2566(dnaE) Score=4.5 Pos=-73 [Bacillus pumilus SAFR-032]
AAGAACATTTGTTTCT
>BPUM_2882(BH1502) Score=4.8 Pos=-46 [Bacillus pumilus SAFR-032]
AAGAACGTTTGTTCGA
>BPUM_2882(BH1502) Score=4.4 Pos=-75 [Bacillus pumilus SAFR-032]
CAGAACAAACGTTCCT
>BPUM_2567(ytrH) Score=4.7 Pos=-80 [Bacillus pumilus SAFR-032]
AGAAACAAATGTTCTT
>BPUM_0625(pcrA) Score=5.2 Pos=-32 [Bacillus pumilus SAFR-032]
TAGAACATAAGTTCGA
>BPUM_0934(yhaO) Score=3.8 Pos=-71 [Bacillus pumilus SAFR-032]
TAGAACGTGCATTCGC
>BPUM_0990(yhjE) Score=4.6 Pos=-128 [Bacillus pumilus SAFR-032]
TAGAACACACGTTCTT
>BPUM_0996(sbcC) Score=4.2 Pos=-115 [Bacillus pumilus SAFR-032]
TCGAAGAGAGGTTCGT
# TF - GanR: BPUM_3612
>BPUM_3612(ganR) Score=5.6 Pos=-74 [Bacillus pumilus SAFR-032]
TTTAATAAAAATATTTACTAAT
>BPUM_3613(ganO) Score=6.8 Pos=-126 [Bacillus pumilus SAFR-032]
TTGAGTAAAAAATTTTACTTAA
# TF - HrcA: BPUM_2282
>BPUM_2282(hrcA) Score=7.5 Pos=-41 [Bacillus pumilus SAFR-032]
TTAGCACTCGTTGAAAGAGAGTGCTAA
>BPUM_0534(groES) Score=7.5 Pos=-65 [Bacillus pumilus SAFR-032]
TTAGCACTCACTGGTGATGAGTGCTAA
# TF - GlvR2: BPUM_0659
>BPUM_0660(glvC) Score=7.1 Pos=-130 [Bacillus pumilus SAFR-032]
TGAAAATATTTTCTTTCTGTGAAAA
>BPUM_0659(glvR2) Score=5.4 Pos=-51 [Bacillus pumilus SAFR-032]
AGATTATATTTTCACAGAAAGAAAA
# TF - Fur: BPUM_2084
>BPUM_0777(ycgT) Score=5.8 Pos=-58 [Bacillus pumilus SAFR-032]
AATGAGAATCAATATCACT
>BPUM_3379(ywjA) Score=6.5 Pos=-46 [Bacillus pumilus SAFR-032]
ATTGAAAATGATTATCAAT
>BPUM_2949(yusV) Score=5.9 Pos=-126 [Bacillus pumilus SAFR-032]
ATTGAAAATGATTTTCAAA
>BPUM_2873(yumC) Score=5.6 Pos=-35 [Bacillus pumilus SAFR-032]
AGTGATAACAATTTTCATT
>BPUM_1312(ykuN) Score=6.5 Pos=-38 [Bacillus pumilus SAFR-032]
ATTGAAAATGATTATCATT
>BPUM_1312(ykuN) Score=6.5 Pos=-75 [Bacillus pumilus SAFR-032]
AATGAAAATCATTATCATT
>BPUM_0791(yfhC) Score=5.9 Pos=-45 [Bacillus pumilus SAFR-032]
AATGAGAATCAATTTCAAT
>BPUM_0984(yclN) Score=6.4 Pos=-57 [Bacillus pumilus SAFR-032]
ATTGATAATGATAATCATT
>BPUM_0777(ycgT) Score=5.8 Pos=-58 [Bacillus pumilus SAFR-032]
AATGAGAATCAATATCACT
>BPUM_3700(btr) Score=6.3 Pos=-190 [Bacillus pumilus SAFR-032]
ATTGATAATCATTTTCACT
>BPUM_3700(btr) Score=5.6 Pos=-196 [Bacillus pumilus SAFR-032]
TTTGATATTGATAATCATT
>BPUM_3070(nikA) Score=5.1 Pos=-34 [Bacillus pumilus SAFR-032]
AATGATTATCAGCATCAAT
>BPUM_3070(nikA) Score=5.7 Pos=-40 [Bacillus pumilus SAFR-032]
AATGAAAATGATTATCAGC
>BPUM_2994(fhuD) Score=6 Pos=-44 [Bacillus pumilus SAFR-032]
ATTGAGAATCATTATCATA
>BPUM_2994(fhuD) Score=6.7 Pos=-220 [Bacillus pumilus SAFR-032]
AATGATAATGATTATCAAT
>BPUM_2992(fhuB) Score=6.7 Pos=-58 [Bacillus pumilus SAFR-032]
ATTGATAATCATTATCATT
>BPUM_2992(fhuB) Score=6 Pos=-234 [Bacillus pumilus SAFR-032]
TATGATAATGATTCTCAAT
>BPUM_3701(feuA) Score=5.5 Pos=-34 [Bacillus pumilus SAFR-032]
ATTGAGAACAATTATCAGT
>BPUM_2037(fer) Score=5.2 Pos=-146 [Bacillus pumilus SAFR-032]
TGTGATAAGCATTCTCATT
>BPUM_1939(ypbR) Score=5.8 Pos=-267 [Bacillus pumilus SAFR-032]
AATGATAAGCATTCTCAAT
>BPUM_1939(ypbR) Score=6.5 Pos=-303 [Bacillus pumilus SAFR-032]
ATTGAAAATCATTATCAAT
>BPUM_0425(ydbN) Score=6.5 Pos=-74 [Bacillus pumilus SAFR-032]
ATTGAAAATGATTATCAAT
>BPUM_1019(dat) Score=6.2 Pos=-36 [Bacillus pumilus SAFR-032]
AATGATAATCTTTATCAAT
>BPUM_0777(ycgT) Score=5.4 Pos=-64 [Bacillus pumilus SAFR-032]
TATGATAATGAGAATCAAT
>BPUM_2084(fur) Score=4.7 Pos=-78 [Bacillus pumilus SAFR-032]
ATTTAAAATGATTATAGTT
# TF - Fnr
>BPUM_0277(ldh) Score=6 Pos=-54 [Bacillus pumilus SAFR-032]
TGTGAAATACTTCACA
>BPUM_0277(ldh) Score=5.4 Pos=-77 [Bacillus pumilus SAFR-032]
TGTGAAGTATTGCACA
# TF - ExuR: BPUM_2986
>BPUM_2987(uxaC) Score=6.2 Pos=-52 [Bacillus pumilus SAFR-032]
TTGTTAACGTGAACAA
# TF - CggR: BPUM_3058
>BPUM_3058(cggR) Score=8.2 Pos=-63 [Bacillus pumilus SAFR-032]
CGGGACGTTTTTTGTCACAGTGGGACTTTTTTAGTCC
# TF - BirA: BPUM_1975
>BPUM_2376(bioY2) Score=8.6 Pos=-88 [Bacillus pumilus SAFR-032]
ATGTTAAC---------------GTTGACAT
>BPUM_2863(bioY1) Score=8.7 Pos=-83 [Bacillus pumilus SAFR-032]
TTGTTAAC---------------GTTGACAA
>BPUM_2779(bioB) Score=8.7 Pos=-48 [Bacillus pumilus SAFR-032]
ATGTTAAC---------------GTTAACAT
# TF - ArgR: BPUM_2157
>BPUM_2138(artP) Score=4.5 Pos=-54 [Bacillus pumilus SAFR-032]
GTGAATAAATATTCAA
>BPUM_1046(carA) Score=4.5 Pos=-53 [Bacillus pumilus SAFR-032]
ACGCATAAAAATGCAT
>BPUM_1046(carA) Score=4.5 Pos=-43 [Bacillus pumilus SAFR-032]
ATGCATTTATATTACT
>BPUM_1046(carA) Score=4.4 Pos=-33 [Bacillus pumilus SAFR-032]
ATTACTAATTATTCAA
>BPUM_2577(argG) Score=4.7 Pos=-80 [Bacillus pumilus SAFR-032]
ATGCATGTTTATAAAT
>BPUM_2577(argG) Score=4.2 Pos=-76 [Bacillus pumilus SAFR-032]
ATGTTTATAAATTAAA
>BPUM_2577(argG) Score=4.2 Pos=-60 [Bacillus pumilus SAFR-032]
ACTTATTTTTATGCAA
>BPUM_1042(argC) Score=4.2 Pos=-184 [Bacillus pumilus SAFR-032]
TATTATATTTATGCAG
>BPUM_1042(argC) Score=4.3 Pos=-96 [Bacillus pumilus SAFR-032]
ATGAAAAAAAATGAAA
>BPUM_1042(argC) Score=5 Pos=-57 [Bacillus pumilus SAFR-032]
ATTAATTTTTATACAT
>BPUM_3060(rocD) Score=4.1 Pos=-268 [Bacillus pumilus SAFR-032]
ATTTGTTTATATAAAT
# TF - MhqR: BPUM_1258
>BPUM_3715(mhqO) Score=5.7 Pos=-81 [Bacillus pumilus SAFR-032]
TATCCTTAATTCGAGATA
>BPUM_3715(mhqO) Score=6.8 Pos=-43 [Bacillus pumilus SAFR-032]
TATCTCGAATTCGAGATA
>BPUM_0385(azoR2) Score=5.7 Pos=-190 [Bacillus pumilus SAFR-032]
TATCTTGATTTCGAGACT
>BPUM_1180(mhqA) Score=6.6 Pos=-40 [Bacillus pumilus SAFR-032]
TATCTTGAATTCGAGATA
# TF - MurR: BPUM_0157
>BPUM_0158(murQ) Score=6.2 Pos=-90 [Bacillus pumilus SAFR-032]
CTGAAATATAATTTCAG
# TF - SinR: BPUM_2193
>BPUM_2196(yqxM) Score=6.3 Pos=-41 [Bacillus pumilus SAFR-032]
GTTCTTTTTAAAGAAC
>BPUM_3083(epsA) Score=6.3 Pos=-125 [Bacillus pumilus SAFR-032]
GTTCTTTAAAAAGAAC
>BPUM_3084(slr) Score=6.3 Pos=-148 [Bacillus pumilus SAFR-032]
GTTCTTTTTAAAGAAC
# TF - PurR: BPUM_0031
>BPUM_2164(nusB) Score=8.2 Pos=-145 [Bacillus pumilus SAFR-032]
ATTTCCGAATCATA----------------AATGATTCGTTTTT
>BPUM_1944(xpt) Score=8.9 Pos=-301 [Bacillus pumilus SAFR-032]
AAAAACGAACGTTT----------------TTAAGTTCGGTATT
>BPUM_3335(glyA) Score=8.1 Pos=-157 [Bacillus pumilus SAFR-032]
AATATTGAATGATG----------------GAATATTCGGTTTT
>BPUM_0596(purE) Score=8.6 Pos=-352 [Bacillus pumilus SAFR-032]
AAATCCGAACATTA----------------GATTGTTCGATAAA
>BPUM_3693(purA) Score=9.3 Pos=-128 [Bacillus pumilus SAFR-032]
TAAAACGAACAAAA----------------TAATGTTCGGCTTT
>BPUM_0592(pbuG) Score=8.5 Pos=-329 [Bacillus pumilus SAFR-032]
TAAGACGAATGAAG----------------AAATGTTCGCTTTT
>BPUM_0031(purR) Score=8.8 Pos=-57 [Bacillus pumilus SAFR-032]
AAATCCGTATATTA----------------AATTATTCGGGTTC
>BPUM_2646(pbuO) Score=9.1 Pos=-55 [Bacillus pumilus SAFR-032]
TAAAACGAATATTA----------------TAATGTTCGTAAAT
>BPUM_2189(gcvT) Score=7.8 Pos=-464 [Bacillus pumilus SAFR-032]
AAAAGCGAACGATA----------------AAATGTTAATGATT
>BPUM_1179(steT) Score=6.5 Pos=-103 [Bacillus pumilus SAFR-032]
AAATCAGAAAATTT----------------CTAAAATCGTATTA
>BPUM_1179(steT) Score=8.4 Pos=-205 [Bacillus pumilus SAFR-032]
TAAAATTAACATTA----------------TATTGTTCGTTTTT
# TF - CcpA: BPUM_2620
>BPUM_2208(yqgY) Score=4.6 Pos=-76 [Bacillus pumilus SAFR-032]
ATGTAAATGTTTACAT
>BPUM_2210(yqgW) Score=4.8 Pos=-40 [Bacillus pumilus SAFR-032]
ATGAAAACGGTTAAAA
>BPUM_0455(acoR) Score=5.1 Pos=-59 [Bacillus pumilus SAFR-032]
TTGAAAGCGCTTTTAT
>BPUM_2534(lrgA) Score=4.5 Pos=-68 [Bacillus pumilus SAFR-032]
TTGTAAACGCTTCATT
>BPUM_3586(nupC) Score=4.5 Pos=-31 [Bacillus pumilus SAFR-032]
ATGTAAACGAATTCAT
>BPUM_2330(araR) Score=4.9 Pos=-254 [Bacillus pumilus SAFR-032]
TTGATAGCGGTTTCAA
>BPUM_3613(cycB) Score=4.8 Pos=-51 [Bacillus pumilus SAFR-032]
AAGAAAGCGTTTTCTT
>BPUM_2617(acuA) Score=4.4 Pos=-74 [Bacillus pumilus SAFR-032]
GTGAAACCGTTTTAAT
>BPUM_3416(ywfI) Score=4.5 Pos=-156 [Bacillus pumilus SAFR-032]
ATTATAGCGCTTACAA
>BPUM_2978(dapA) Score=5.1 Pos=-59 [Bacillus pumilus SAFR-032]
ATGAAAGCGTTTAAAT
>BPUM_1403(ylbP) Score=4.8 Pos=-58 [Bacillus pumilus SAFR-032]
ATGAAAACGCCTTCAA
>BPUM_1233(ykoM) Score=4.9 Pos=-104 [Bacillus pumilus SAFR-032]
TTGAAAGGGTTTTCAA
>BPUM_1507(sucC) Score=4.8 Pos=-57 [Bacillus pumilus SAFR-032]
ATGAAAGCGCAGTCTA
>BPUM_2216(yqgQ) Score=4.2 Pos=-49 [Bacillus pumilus SAFR-032]
CTGAAAGCGCATTTAT
>BPUM_0922(msmX) Score=4.1 Pos=-41 [Bacillus pumilus SAFR-032]
AGTGAAGCGCTTTCAA
>BPUM_2209(yqgX) Score=4.4 Pos=-103 [Bacillus pumilus SAFR-032]
TTTTAACCGTTTTCAT
>BPUM_0244(glsA1) Score=5.2 Pos=-216 [Bacillus pumilus SAFR-032]
ATGTAAGCGTTTTCTT
>BPUM_2326(araE) Score=4.7 Pos=-35 [Bacillus pumilus SAFR-032]
ATGAAAGCGGTTAATT
>BPUM_3618(citMII) Score=4.5 Pos=-32 [Bacillus pumilus SAFR-032]
ATGTAAACGGTTTATT
>BPUM_0145(mrp) Score=4.6 Pos=-35 [Bacillus pumilus SAFR-032]
TTGTAAACGAATTCAA
>BPUM_3618(citMII) Score=4.6 Pos=-120 [Bacillus pumilus SAFR-032]
ATGAAAGCGGTTGCCT
>BPUM_3063(sigL) Score=4.7 Pos=951 [Bacillus pumilus SAFR-032]
ATGAAACCGCTTACGA
>BPUM_2004(ndk) Score=4.3 Pos=-43 [Bacillus pumilus SAFR-032]
ATGTAAGCCTATACAT
>BPUM_0451(acoA) Score=4.9 Pos=415 [Bacillus pumilus SAFR-032]
ATGTAAGCGTTTGCTT
>BPUM_2503(sdhC) Score=4.2 Pos=-139 [Bacillus pumilus SAFR-032]
ATGTACGCGGTTTCTT
>BPUM_2616(acsA) Score=4.7 Pos=-30 [Bacillus pumilus SAFR-032]
TTGTAAACGTATGCAA
>BPUM_2556(citZ) Score=4.6 Pos=-111 [Bacillus pumilus SAFR-032]
ATGTAAGCATTTTCTT
>BPUM_2556(citZ) Score=4.5 Pos=-69 [Bacillus pumilus SAFR-032]
TGGATAGCGCTTTCAA
>BPUM_2666(ytcP) Score=5 Pos=-28 [Bacillus pumilus SAFR-032]
ATGATAACGCTTTCAA
>BPUM_0463(bglS) Score=5 Pos=-38 [Bacillus pumilus SAFR-032]
AAGAAAACGCTTTCAA
>BPUM_2473(dat) Score=4.6 Pos=-200 [Bacillus pumilus SAFR-032]
GTGTAAGCGTATACAT
>BPUM_2987(uxaC) Score=4.8 Pos=-73 [Bacillus pumilus SAFR-032]
TTGTAAACGATTACAA
>BPUM_2986(exuR) Score=4.9 Pos=-52 [Bacillus pumilus SAFR-032]
ATGAAAGCGGTTTTAT
>BPUM_0644(gatC) Score=5 Pos=-215 [Bacillus pumilus SAFR-032]
ATGTAAGCGCTACCAA
>BPUM_1334(fruR) Score=4.7 Pos=-30 [Bacillus pumilus SAFR-032]
ATGAATACGTTTTCAA
>BPUM_3263(rbsR) Score=4.2 Pos=-38 [Bacillus pumilus SAFR-032]
GTGTAAACGGTTACAC
>BPUM_3506(licB) Score=5.3 Pos=-71 [Bacillus pumilus SAFR-032]
ATGAAAGCGGTTTCAT
>BPUM_0388(mtlR) Score=5 Pos=-60 [Bacillus pumilus SAFR-032]
TTGAAAGCGTTTTATA
>BPUM_0369(mtlA) Score=4.1 Pos=-106 [Bacillus pumilus SAFR-032]
GTGAAAGCGTTTTACG
>BPUM_1785(yngI) Score=4.8 Pos=-35 [Bacillus pumilus SAFR-032]
ATGTAAACGCTTACCA
>BPUM_1387(ylbB) Score=4.5 Pos=-116 [Bacillus pumilus SAFR-032]
ATGAAAGCGTTAAACT
>BPUM_1754(msmR) Score=4.4 Pos=-78 [Bacillus pumilus SAFR-032]
TTGAAAGCGCTTTACC
>BPUM_2081(drm) Score=4.5 Pos=-82 [Bacillus pumilus SAFR-032]
TTGTAAACGGTTTATA
>BPUM_3566(bglP) Score=4.6 Pos=-320 [Bacillus pumilus SAFR-032]
AAGAAAGCGTTGACAT
>BPUM_3246(kduI) Score=4.7 Pos=-122 [Bacillus pumilus SAFR-032]
AAGAAAGCGATTTCAA
>BPUM_3246(kduI) Score=4.3 Pos=-64 [Bacillus pumilus SAFR-032]
TTGAAACCGATACCAA
>BPUM_2556(mmgD) Score=4.6 Pos=-111 [Bacillus pumilus SAFR-032]
ATGTAAGCATTTTCTT
>BPUM_2556(mmgD) Score=4.5 Pos=-69 [Bacillus pumilus SAFR-032]
TGGATAGCGCTTTCAA
>BPUM_3373(mmgA) Score=4.9 Pos=-32 [Bacillus pumilus SAFR-032]
ATGTAAGCGGTAACAA
>BPUM_0710(citM) Score=5.2 Pos=-33 [Bacillus pumilus SAFR-032]
ATGAAAGCGTATACAA
>BPUM_2579(ackA) Score=4.7 Pos=-180 [Bacillus pumilus SAFR-032]
ATGTAAGCGGTAACAG
>BPUM_0882(glpF) Score=4.9 Pos=-191 [Bacillus pumilus SAFR-032]
TTGACAACGTTTTCAT
>BPUM_1832(xynP) Score=5.1 Pos=-90 [Bacillus pumilus SAFR-032]
TTGAAAGCGCTTTATA
>BPUM_2121(gmuB) Score=4.2 Pos=-37 [Bacillus pumilus SAFR-032]
CTGGAAGCGCTTTTAT
>BPUM_2513(lcfA) Score=5.2 Pos=411 [Bacillus pumilus SAFR-032]
ATGAAAGCGCTGACAA
>BPUM_0419(dctA) Score=4.8 Pos=-72 [Bacillus pumilus SAFR-032]
TTGAAATCGCTATCAT
>BPUM_3415(pta) Score=4.9 Pos=-100 [Bacillus pumilus SAFR-032]
TTGTAAGCGCTATAAT
>BPUM_0728(treP) Score=4 Pos=318 [Bacillus pumilus SAFR-032]
GTGAAAACGCTTGCGG
>BPUM_3452(sacP) Score=5.1 Pos=-145 [Bacillus pumilus SAFR-032]
ATGAAAGCGTAATCAA
>BPUM_3244(kdgK) Score=4.5 Pos=-32 [Bacillus pumilus SAFR-032]
TTGAAACCGGTACCAA
>BPUM_3245(kdgR) Score=4.2 Pos=-53 [Bacillus pumilus SAFR-032]
TTGAAATCGGTTTCGA
>BPUM_1404(apbA) Score=4.8 Pos=-166 [Bacillus pumilus SAFR-032]
TTGAAGGCGTTTTCAT
>BPUM_0182(glpT) Score=4.9 Pos=-104 [Bacillus pumilus SAFR-032]
AAGAAAGCGTTATCAA
>BPUM_2525(cstA) Score=4.6 Pos=0 [Bacillus pumilus SAFR-032]
ATGAATGCGGTTACAA
>BPUM_1862(odhA) Score=4.7 Pos=-101 [Bacillus pumilus SAFR-032]
TTGGAAGCGTTTTATT
>BPUM_3468(galK) Score=4.4 Pos=247 [Bacillus pumilus SAFR-032]
TTGAAATCGCTTACGT
>BPUM_2329 Score=5 Pos=-35 [Bacillus pumilus SAFR-032]
TTGAAACCGCTATCAA
>BPUM_2252(cccA) Score=4.8 Pos=-330 [Bacillus pumilus SAFR-032]
ATGAAAACGCTTTTTT
>BPUM_3238(BPUM_3238) Score=4.9 Pos=-37 [Bacillus pumilus SAFR-032]
TTGATAACGCTTACAA
>BPUM_0209(bglP1) Score=4.6 Pos=-221 [Bacillus pumilus SAFR-032]
AAGAAAGCGTTGACAT
# TF - GlnR: BPUM_1636
>BPUM_1636(glnR) Score=5.3 Pos=-83 [Bacillus pumilus SAFR-032]
ATGTTAATATTCCTAACAT
>BPUM_1636(glnR) Score=5.1 Pos=-60 [Bacillus pumilus SAFR-032]
TTGACATATAATATAACAT
>BPUM_1636(glnR) Score=4.6 Pos=-55 [Bacillus pumilus SAFR-032]
ATATAATATAACATGACAT
>BPUM_1230(tnrA) Score=4.3 Pos=-122 [Bacillus pumilus SAFR-032]
TTGTCAACTTTCCTTCCAT
>BPUM_1230(tnrA) Score=4.9 Pos=-81 [Bacillus pumilus SAFR-032]
GTGTTATATTTTCTAACAA
# TF - MsmR: BPUM_1754
>BPUM_1754(msmR) Score=4.4 Pos=-80 [Bacillus pumilus SAFR-032]
ACTTGAAAGCGCTTTACCAA
# TF - NrdR: BPUM_2544
>BPUM_1628(nrdI) Score=4.6 Pos=-86 [Bacillus pumilus SAFR-032]
CATCTATATGTTGTGT
>BPUM_1628(nrdI) Score=5.6 Pos=-54 [Bacillus pumilus SAFR-032]
ATACTATATATAGTGA
# TF - RbsR: BPUM_3263
>BPUM_3263(rbsR) Score=6.6 Pos=-40 [Bacillus pumilus SAFR-032]
TTGTGTAAACGGTTACACAT
# TF - TnrA: BPUM_1230
>BPUM_3499(ywoF) Score=5 Pos=-121 [Bacillus pumilus SAFR-032]
TGTAAGATATTCTTTCA
>BPUM_1042(argC) Score=4.7 Pos=-34 [Bacillus pumilus SAFR-032]
TGTTAAATAATTTCACA
>BPUM_2473(ilvE) Score=4.9 Pos=-312 [Bacillus pumilus SAFR-032]
TGTGAAAAAATATGACA
>BPUM_2382(glnQ) Score=3.8 Pos=-93 [Bacillus pumilus SAFR-032]
TGTTAAAAATGAATACA
>BPUM_1636(glnR) Score=4.4 Pos=-82 [Bacillus pumilus SAFR-032]
TGTTAATATTCCTAACA
>BPUM_1636(glnR) Score=5.1 Pos=-59 [Bacillus pumilus SAFR-032]
TGACATATAATATAACA
>BPUM_1636(glnR) Score=4.2 Pos=-54 [Bacillus pumilus SAFR-032]
TATAATATAACATGACA
>BPUM_1814(gltA) Score=4.6 Pos=-54 [Bacillus pumilus SAFR-032]
TGTGAGATTTTATTACT
>BPUM_1815(gltC) Score=4.6 Pos=-116 [Bacillus pumilus SAFR-032]
AGTAATAAAATCTCACA
>BPUM_1922(ilvD) Score=5 Pos=-162 [Bacillus pumilus SAFR-032]
GGTCAGATTTTATGACA
>BPUM_3259(capB) Score=4.9 Pos=-106 [Bacillus pumilus SAFR-032]
TGAAAGATTATGTTACA
>BPUM_2903(pucR) Score=4.4 Pos=-142 [Bacillus pumilus SAFR-032]
TGTCATGTTAGTTGACA
>BPUM_2261(yqzL) Score=5.5 Pos=-134 [Bacillus pumilus SAFR-032]
TGTCATAAAATCTGACA
>BPUM_1230(tnrA) Score=4 Pos=-121 [Bacillus pumilus SAFR-032]
TGTCAACTTTCCTTCCA
>BPUM_1230(tnrA) Score=5.5 Pos=-80 [Bacillus pumilus SAFR-032]
TGTTATATTTTCTAACA
>BPUM_0344(yclG) Score=3.8 Pos=-73 [Bacillus pumilus SAFR-032]
TGAAAGAATTTATTTAA
>BPUM_0379(lamB) Score=5.5 Pos=-113 [Bacillus pumilus SAFR-032]
TGTTATATTTTCTAACA
>BPUM_0239(ydaB) Score=4.5 Pos=-70 [Bacillus pumilus SAFR-032]
TGAGATAAAATCTGCCA
>BPUM_1231(ykzB) Score=5.5 Pos=-123 [Bacillus pumilus SAFR-032]
TGTTAGAAAATATAACA
>BPUM_1231(ykzB) Score=4 Pos=-82 [Bacillus pumilus SAFR-032]
TGGAAGGAAAGTTGACA
>BPUM_1877(yhjC) Score=4.9 Pos=-59 [Bacillus pumilus SAFR-032]
TGTGATCTAATCTGACA
>BPUM_1878(yodF) Score=4 Pos=1 [Bacillus pumilus SAFR-032]
TGCAAGGAAATTTGACA
>BPUM_3242(ysnE) Score=4.3 Pos=-64 [Bacillus pumilus SAFR-032]
TGTTCGTTTATGTGACA
>BPUM_2871(yuiA) Score=4.5 Pos=20 [Bacillus pumilus SAFR-032]
TGACAGATTTTCTTACT
>BPUM_1615(rapJ) Score=3.4 Pos=-89 [Bacillus pumilus SAFR-032]
TTATGTAATAACTTACA
>BPUM_0343(yclF) Score=3.8 Pos=-183 [Bacillus pumilus SAFR-032]
TTAAATAAATTCTTTCA
>BPUM_0343(yclF) Score=3.7 Pos=-141 [Bacillus pumilus SAFR-032]
TGAAAGAATTTTTCATA
>BPUM_1193(ykgA) Score=4.1 Pos=-82 [Bacillus pumilus SAFR-032]
TGAGAGATTTTCTATCG
>BPUM_3198(degU) Score=3.4 Pos=-221 [Bacillus pumilus SAFR-032]
TGTGAAAACAAATAAAA
>BPUM_3198(degU) Score=3.8 Pos=-159 [Bacillus pumilus SAFR-032]
TGGAAGGTAAAATGACC
# TF - BglR: BPUM_3663
>BPUM_3662(bglA) Score=6.4 Pos=-92 [Bacillus pumilus SAFR-032]
AATTGTGCCGGTATAATT
>BPUM_3663(bglR) Score=6.4 Pos=-114 [Bacillus pumilus SAFR-032]
AATTATACCGGCACAATT
# TF - NsrR : BPUM_0893
>BPUM_0893(nsrR) Score=7.5 Pos=-167 [Bacillus pumilus SAFR-032]
AAAAGGTGTATTTTAAATACATCTTTA
>BPUM_0893(nsrR) Score=6.4 Pos=-119 [Bacillus pumilus SAFR-032]
AAAAGCAATATTTATAATACATGTTTT
>BPUM_0894(hmp) Score=6.4 Pos=-91 [Bacillus pumilus SAFR-032]
AAAACATGTATTATAAATATTGCTTTT
>BPUM_0894(hmp) Score=7.5 Pos=-43 [Bacillus pumilus SAFR-032]
TAAAGATGTATTTAAAATACACCTTTT
>BPUM_1811(nasD) Score=6.6 Pos=-72 [Bacillus pumilus SAFR-032]
AAAAGGTGTATTTTATATCTATGTTTA
# TF - HisR: BPUM_0619
>BPUM_3128(hisZ) Score=5.3 Pos=-62 [Bacillus pumilus SAFR-032]
CATATTAGCGAACTAAAGGA
>BPUM_2865(yuiF) Score=5.8 Pos=-36 [Bacillus pumilus SAFR-032]
TACATTAGTAAACTAAAGGA
# TF - CzrA: BPUM_1843
>BPUM_3010(cadA) Score=7.3 Pos=-87 [Bacillus pumilus SAFR-032]
TATATGAATATATGCTCATATA
# TF - YwrC: BPUM_3273
>BPUM_3273(ywrC) Score=5.1 Pos=-50 [Bacillus pumilus SAFR-032]
ATTCATTTCGTTA
# TF - RocR: BPUM_3061
>BPUM_3061(rocR) Score=7.2 Pos=-89 [Bacillus pumilus SAFR-032]
AGCAAAAT-TCTTTGCA
>BPUM_3060(rocD) Score=7.2 Pos=-137 [Bacillus pumilus SAFR-032]
TGCAAAGA-ATTTTGCT
# TF - AcoR: BPUM_0455
>BPUM_0451(acoA) Score=7.7 Pos=-140 [Bacillus pumilus SAFR-032]
GACAAATAGAGATTCAAGTCTCATTTTGTCTC
# TF - BkdR: BPUM_2149
>BPUM_2149(bkdR) Score=5.6 Pos=-61 [Bacillus pumilus SAFR-032]
TGCAATTTTTTGCA
>BPUM_2148(ptb) Score=4.8 Pos=-113 [Bacillus pumilus SAFR-032]
TGCAAAAAGTTGCG
>BPUM_2148(ptb) Score=5.4 Pos=-134 [Bacillus pumilus SAFR-032]
TGCAATAAAATGCA
>BPUM_2149(bkdR) Score=4.7 Pos=-31 [Bacillus pumilus SAFR-032]
TGCAAATTTTTTCA
# TF - GmuR: BPUM_2117
>BPUM_2121(gmuB) Score=6.9 Pos=-78 [Bacillus pumilus SAFR-032]
TAAATGTCTAGACATTTA
# TF - CcpN: BPUM_2257
>BPUM_2687(pckA) Score=4.6 Pos=-58 [Bacillus pumilus SAFR-032]
TGAATGTGTTATACTAATCGA
>BPUM_2547(gapB) Score=4.4 Pos=-69 [Bacillus pumilus SAFR-032]
CTAATGTGATATACTAATTTC
>BPUM_2547(gapB) Score=5.1 Pos=-38 [Bacillus pumilus SAFR-032]
TTATTGAGTATAACACATAAT
# TF - BglZ: BPUM_1277
>BPUM_1277(bglZ) Score=5.9 Pos=-40 [Bacillus pumilus SAFR-032]
TATGAAACGCTTACCATA
# TF - FadR: BPUM_2512
>BPUM_1303(ykuF) Score=6.7 Pos=-40 [Bacillus pumilus SAFR-032]
ATGAATGAATAGTCATTCAA
>BPUM_0969(lcfB) Score=6.5 Pos=-44 [Bacillus pumilus SAFR-032]
ATGAATGGTTATTCATTCAT
>BPUM_3374(fadF) Score=6.6 Pos=-88 [Bacillus pumilus SAFR-032]
TTGACTGAATACTCATTCAT
>BPUM_2942(fadN) Score=6.5 Pos=-39 [Bacillus pumilus SAFR-032]
ATGAATGACTGTTCATTCAA
>BPUM_2512(fadR) Score=6.8 Pos=-41 [Bacillus pumilus SAFR-032]
ATGAATGAATACTCATTCAA
# TF - DeoR: BPUM_3588
>BPUM_3587(dra) Score=6.5 Pos=-83 [Bacillus pumilus SAFR-032]
ATGAACAAAATTTCAT
>BPUM_3587(dra) Score=4.1 Pos=-35 [Bacillus pumilus SAFR-032]
ATGAtgAAAgTaTCAt
# TF - YwbI: BPUM_3485
>BPUM_3485(ywbI) Score=6 Pos=-62 [Bacillus pumilus SAFR-032]
ATAGGTAAAATACATAT
>BPUM_3486(cidA) Score=6 Pos=-120 [Bacillus pumilus SAFR-032]
ATATGTATTTTACCTAT
# TF - CysL: BPUM_3611
>BPUM_1777(cysJ) Score=5 Pos=-137 [Bacillus pumilus SAFR-032]
ATTAGAAATCTTAAT
>BPUM_1777(cysJ) Score=3.9 Pos=-109 [Bacillus pumilus SAFR-032]
ATTATATATTTTACT
>BPUM_3611(cysL) Score=4.4 Pos=-28 [Bacillus pumilus SAFR-032]
ATTAAGATTTCTGAT
# TF - OhrR: BPUM_1212
>BPUM_1211(ohrA) Score=6.2 Pos=-58 [Bacillus pumilus SAFR-032]
TAAATTGTGTACAATTCA
# TF - RmgR: BPUM_2661
>BPUM_2660(yteP) Score=6.7 Pos=-223 [Bacillus pumilus SAFR-032]
CCATTT------------TCTTTT
>BPUM_2660(yteP) Score=8.2 Pos=-155 [Bacillus pumilus SAFR-032]
TCATTT------------TCATTT
# TF - CodY: BPUM_1515
>BPUM_0965(gltT) Score=4.4 Pos=-140 [Bacillus pumilus SAFR-032]
TTTTTTCAAACAATT
>BPUM_1119(metI) Score=4.4 Pos=-297 [Bacillus pumilus SAFR-032]
AAAATACAGAAAATT
>BPUM_1603(tdh) Score=4.4 Pos=-136 [Bacillus pumilus SAFR-032]
TTTTTTTAGAAAAAT
>BPUM_0343(yclF) Score=4.5 Pos=-187 [Bacillus pumilus SAFR-032]
AATTTTAAATAAATT
>BPUM_0697(yfmB) Score=4.7 Pos=-80 [Bacillus pumilus SAFR-032]
AATTTTCTGAAATAT
>BPUM_1860(yocS) Score=4.9 Pos=-62 [Bacillus pumilus SAFR-032]
TTTTTTCAGAAAATT
>BPUM_0276(ycgA) Score=5 Pos=-52 [Bacillus pumilus SAFR-032]
ATTATTCTGAAAATT
>BPUM_0275(amhX) Score=5 Pos=-116 [Bacillus pumilus SAFR-032]
AATTTTCAGAATAAT
>BPUM_3562(metE2) Score=4.4 Pos=-227 [Bacillus pumilus SAFR-032]
TTTATTAAGAAAATT
>BPUM_2605(braB) Score=4.5 Pos=-44 [Bacillus pumilus SAFR-032]
AATTAACAGAATATT
>BPUM_0501(gltP) Score=4.5 Pos=-44 [Bacillus pumilus SAFR-032]
AAAATTCTTAAAATT
>BPUM_2504(yslB) Score=4.5 Pos=-134 [Bacillus pumilus SAFR-032]
AATTTTCCGAAATTT
>BPUM_2504(yslB) Score=4.5 Pos=-201 [Bacillus pumilus SAFR-032]
AATTTATTGACAATT
>BPUM_2503(sdhC) Score=4.5 Pos=-94 [Bacillus pumilus SAFR-032]
AATTGTCAATAAATT
>BPUM_2503(sdhC) Score=4.5 Pos=-161 [Bacillus pumilus SAFR-032]
AAATTTCGGAAAATT
>BPUM_3500(ybgE) Score=4.4 Pos=-226 [Bacillus pumilus SAFR-032]
AATTGTCAGATTAAT
>BPUM_2823(nupN) Score=4.5 Pos=-233 [Bacillus pumilus SAFR-032]
ATTTTTTTAAAAATA
>BPUM_0906(yhdT) Score=5 Pos=-196 [Bacillus pumilus SAFR-032]
AATTTTCAGATTATT
>BPUM_0905(cueR) Score=5 Pos=-153 [Bacillus pumilus SAFR-032]
AATAATCTGAAAATT
>BPUM_0503(yaaC) Score=5 Pos=-36 [Bacillus pumilus SAFR-032]
AATTTTTAGAAAATA
>BPUM_0543(gabP) Score=4.5 Pos=-231 [Bacillus pumilus SAFR-032]
AAATTTCAGAATAAT
>BPUM_2888(hom) Score=4.8 Pos=-185 [Bacillus pumilus SAFR-032]
AATATTTTGAAAATA
>BPUM_3043(opuCA) Score=5 Pos=-43 [Bacillus pumilus SAFR-032]
AATTTTCTGAATATA
>BPUM_0644(gatC) Score=4.9 Pos=-182 [Bacillus pumilus SAFR-032]
AATTTTCTGATAAAT
>BPUM_0978(comK) Score=5 Pos=-222 [Bacillus pumilus SAFR-032]
AATTTTTAGACAATT
>BPUM_2473(dat) Score=4.6 Pos=-54 [Bacillus pumilus SAFR-032]
AAGTGTCTGAAAATT
>BPUM_2473(dat) Score=4.7 Pos=-166 [Bacillus pumilus SAFR-032]
AATTGTCTAATAATT
>BPUM_1698(sspO) Score=4.7 Pos=-152 [Bacillus pumilus SAFR-032]
AATTTTCTCACAATT
>BPUM_1698(sspO) Score=4.6 Pos=-183 [Bacillus pumilus SAFR-032]
AATTCTCAGAAAAAT
>BPUM_0158(murQ) Score=4.5 Pos=-131 [Bacillus pumilus SAFR-032]
TATTTTCTAACTATT
>BPUM_2154(spo0A) Score=4.4 Pos=-111 [Bacillus pumilus SAFR-032]
ATTATTCGGAAAATT
>BPUM_0543(gabP) Score=4.3 Pos=-33 [Bacillus pumilus SAFR-032]
AATATTCTAAAAACA
>BPUM_1184(dppA) Score=5 Pos=-55 [Bacillus pumilus SAFR-032]
ATTTTTTAGAAAATT
>BPUM_0643(opuE) Score=4.9 Pos=-231 [Bacillus pumilus SAFR-032]
ATTTATCAGAAAATT
>BPUM_1071(oppB) Score=4.4 Pos=-38 [Bacillus pumilus SAFR-032]
AATATACAGAAAAGT
>BPUM_1118(ycjH) Score=4.4 Pos=-140 [Bacillus pumilus SAFR-032]
AATTTTCTGTATTTT
>BPUM_1911(ilvA) Score=4.8 Pos=-64 [Bacillus pumilus SAFR-032]
TATTTTTTGAATATT
>BPUM_1672(lutA) Score=4.6 Pos=-103 [Bacillus pumilus SAFR-032]
AAATTTCAGAAATTT
>BPUM_3062(lutR) Score=4.6 Pos=-109 [Bacillus pumilus SAFR-032]
GATTTTTTGAAAATT
>BPUM_3302(spoIIQ) Score=4.6 Pos=-43 [Bacillus pumilus SAFR-032]
TATTTTTTGAAAAGT
>BPUM_1922(ilvD) Score=4.5 Pos=-83 [Bacillus pumilus SAFR-032]
AATAAACAGAAAATT
>BPUM_2039(serA) Score=4.5 Pos=-45 [Bacillus pumilus SAFR-032]
AATTATCAGATATTT
>BPUM_2617(acuA) Score=4.6 Pos=-93 [Bacillus pumilus SAFR-032]
AATTTTTAAAAAACT
>BPUM_1699(citB) Score=4.6 Pos=-52 [Bacillus pumilus SAFR-032]
ATTTTTCTGAGAATT
>BPUM_1877(yoyD) Score=4.4 Pos=-27 [Bacillus pumilus SAFR-032]
AAATTACAAAAAATT
>BPUM_2579(ackA) Score=4.7 Pos=-206 [Bacillus pumilus SAFR-032]
ATTATTCAGAAAATA
>BPUM_1699(citB) Score=4.7 Pos=-83 [Bacillus pumilus SAFR-032]
AATTGTGAGAAAATT
>BPUM_2616(acsA) Score=4.6 Pos=-77 [Bacillus pumilus SAFR-032]
AGTTTTTTAAAAATT
>BPUM_0421(gltO) Score=5 Pos=-252 [Bacillus pumilus SAFR-032]
AATTTTCTAAAAATA
>BPUM_0421(gltO) Score=4.4 Pos=-230 [Bacillus pumilus SAFR-032]
AATAGTATGAAAATA
>BPUM_0965(gltT) Score=4.6 Pos=-273 [Bacillus pumilus SAFR-032]
TTTTTTCTGAAAAAT
>BPUM_2600(ytcI) Score=4.6 Pos=-158 [Bacillus pumilus SAFR-032]
AATAGTTTGAATATT
>BPUM_2556(citZ) Score=4.3 Pos=-210 [Bacillus pumilus SAFR-032]
AAATGTCTGATTATT
>BPUM_0319(srfAA) Score=4 Pos=-366 [Bacillus pumilus SAFR-032]
TATTTTCGGTAAATA
>BPUM_1119(metI) Score=4.1 Pos=-287 [Bacillus pumilus SAFR-032]
AAATTTCAATTAATT
>BPUM_0954(yhaA) Score=4.2 Pos=-58 [Bacillus pumilus SAFR-032]
AAGATTCTAACAATT
# TF - QdoR: BPUM_0235
>BPUM_0236(qodI) Score=5.2 Pos=-56 [Bacillus pumilus SAFR-032]
TTATATCAATTGGTCTAT
# TF - FatR: BPUM_1679
>BPUM_1679(fatR) Score=7 Pos=-40 [Bacillus pumilus SAFR-032]
GGAATGAATGTTCATTCC
# TF - GltC: BPUM_1815
>BPUM_1815(gltC) Score=5.1 Pos=-36 [Bacillus pumilus SAFR-032]
ATCTCTTTTTGAGAT
>BPUM_1815(gltC) Score=5.3 Pos=-58 [Bacillus pumilus SAFR-032]
ATATATAATTTAGAT
>BPUM_1814(gltA) Score=5.3 Pos=-110 [Bacillus pumilus SAFR-032]
ATCTAAATTATATAT
>BPUM_1814(gltA) Score=5.1 Pos=-132 [Bacillus pumilus SAFR-032]
ATCTCAAAAAGAGAT
# TF - AraR: BPUM_2330
>BPUM_2330(araR) Score=6.1 Pos=-191 [Bacillus pumilus SAFR-032]
ATATTTGTACGTACATATGT
>BPUM_2329(araK) Score=6.1 Pos=-102 [Bacillus pumilus SAFR-032]
ACATATGTACGTACAAATAT
# TF - BltR: BPUM_1818
>BPUM_1819(yrkN) Score=5.7 Pos=-32 [Bacillus pumilus SAFR-032]
GACTATGGAGTTACTCCACCCTT
# TF - NagR: BPUM_3140
>BPUM_3138(nagA) Score=5.8 Pos=-71 [Bacillus pumilus SAFR-032]
TTACTGGTATAGACAACTAT
>BPUM_0720(nagP) Score=6.1 Pos=-87 [Bacillus pumilus SAFR-032]
AAATTGGTATAGATAACTAG
# TF - LutR: BPUM_3062
>BPUM_1672(lutA) Score=5 Pos=-59 [Bacillus pumilus SAFR-032]
TTCGTCATCAGAGGACCAA
# TF - KipR: BPUM_0384
>BPUM_0379(ycsF) Score=6 Pos=-33 [Bacillus pumilus SAFR-032]
GTTCCGTTATTCGGAAC
# TF - CcpC: BPUM_1310
>BPUM_1310(ccpC) Score=5.7 Pos=-34 [Bacillus pumilus SAFR-032]
ATAAGAAAAACTTAT
>BPUM_1699(citB) Score=5.7 Pos=-152 [Bacillus pumilus SAFR-032]
ATAAGATAAACTTAT
# TF - BceR: BPUM_2592
>BPUM_2594(bceA) Score=7.9 Pos=-110 [Bacillus pumilus SAFR-032]
TGTGAC-----TGTCAC
# TF - AlsR: BPUM_3270
>BPUM_3270(alsR) Score=5.8 Pos=-38 [Bacillus pumilus SAFR-032]
TAATATGTTTCACGAATAA
>BPUM_3271(alsS) Score=5.8 Pos=-131 [Bacillus pumilus SAFR-032]
TTATTCGTGAAACATATTA
# TF - DesR: BPUM_2590
>BPUM_2588(des) Score=7.9 Pos=-102 [Bacillus pumilus SAFR-032]
ATGACAAATGTCAT
# TF - CssR: BPUM_2953
>BPUM_1181(htrA) Score=6.4 Pos=-100 [Bacillus pumilus SAFR-032]
TTTTCATTTTATCCCA
>BPUM_2953(cssR) Score=1.1 Pos=-84 [Bacillus pumilus SAFR-032]
TGTGAAATTGTGAAAA
>BPUM_1181(htrA) Score=7.6 Pos=-121 [Bacillus pumilus SAFR-032]
TTTTAACAATTTCCCA
>BPUM_2952(htrB) Score=6.2 Pos=-122 [Bacillus pumilus SAFR-032]
ATTATATAATTTGACA
>BPUM_2953(cssR) Score=0.3 Pos=-230 [Bacillus pumilus SAFR-032]
TGTCAAATTATATAAT
# TF - FapR: BPUM_1487
>BPUM_1487(fapR) Score=4.6 Pos=-41 [Bacillus pumilus SAFR-032]
CTATTAGTACCTAGTC
>BPUM_1101(fabI) Score=4.4 Pos=-49 [Bacillus pumilus SAFR-032]
GATCAGGTACTAATAC
>BPUM_0755(BPUM_0755) Score=4.8 Pos=-37 [Bacillus pumilus SAFR-032]
AAATTAGTACTAAATA
>BPUM_1057(fabHA) Score=4.6 Pos=-70 [Bacillus pumilus SAFR-032]
AAATTAGTACCAGATA
>BPUM_0903(plsC) Score=4.7 Pos=-74 [Bacillus pumilus SAFR-032]
TTTTTAGTACCAGGTA
# TF - ComA: BPUM_2837
>BPUM_0319(srfAC) Score=8.8 Pos=-330 [Bacillus pumilus SAFR-032]
ATTCGGCATAACGCAT----------------TTTCGG
>BPUM_2841(degQ) Score=8.4 Pos=-145 [Bacillus pumilus SAFR-032]
TTGCGGTATCACGCAC----------------TTTCGG
# TF - YisR: BPUM_1014
>BPUM_1013(yisQ) Score=6.7 Pos=-100 [Bacillus pumilus SAFR-032]
TGAAGTCGGATTTCTCCAAT
# TF - FruR: BPUM_1334
>BPUM_1334(fruR) Score=8.3 Pos=-117 [Bacillus pumilus SAFR-032]
TGAAAGATTTTGATAGTTAT
>BPUM_1334(fruR) Score=8.8 Pos=-97 [Bacillus pumilus SAFR-032]
TGAATGTATTTGATTGTTTT
# TF - CtsR: BPUM_0068
>BPUM_3100 Score=8 Pos=-175 [Bacillus pumilus SAFR-032]
GGTCAAT---GGTCAAA
>BPUM_3102(clpP) Score=0.6 Pos=-69 [Bacillus pumilus SAFR-032]
TTTGACC---ATTGACC
>BPUM_0068(ctsR) Score=8.5 Pos=-38 [Bacillus pumilus SAFR-032]
AGTCAAA---AGTCAAA
>BPUM_1261(clpE) Score=8.4 Pos=-89 [Bacillus pumilus SAFR-032]
AGTCAAA---GGTCAAA
# TF - CsoR: BPUM_3023
>BPUM_3021(copA) Score=5.6 Pos=-34 [Bacillus pumilus SAFR-032]
ATACCCCCATGGTGTAT
>BPUM_3022(copZ) Score=5.9 Pos=-55 [Bacillus pumilus SAFR-032]
ATACCCTACTAGGGTAT
# TF - Btr: BPUM_3700
>BPUM_3701(feuA) Score=6.6 Pos=-94 [Bacillus pumilus SAFR-032]
TCCAGCA---------------TCTATGG
# TF - CitT: BPUM_0708
>BPUM_0710(citM) Score=4.7 Pos=-153 [Bacillus pumilus SAFR-032]
TGAACAAAATGAACAAAA
# TF - DctR: BPUM_0418
>BPUM_0419(dctA) Score=4.3 Pos=-123 [Bacillus pumilus SAFR-032]
AGACCAAAAAGACCAAAATGTACGATATGTACATAA
# TF - AnsR: BPUM_3549
>BPUM_3549(ansR) Score=-1.6 Pos=-133 [Bacillus pumilus SAFR-032]
TACGCTTTACGCGT
>BPUM_3548(ansA) Score=7.7 Pos=-88 [Bacillus pumilus SAFR-032]
ACGCGTAAAGCGTA
# TF - YfmP: BPUM_0692
>BPUM_0692(yfmP) Score=6.6 Pos=-71 [Bacillus pumilus SAFR-032]
ACATTTACGTTTACGTTAAGGT
# TF - YtcD: BPUM_2662
>BPUM_2663(ytbD) Score=6.3 Pos=-101 [Bacillus pumilus SAFR-032]
AAAAGTACGTACTTTT
>BPUM_2662(ytcD) Score=6.3 Pos=-37 [Bacillus pumilus SAFR-032]
AAAAGTACGTACTTTT
# TF - HxlR: BPUM_2334
>BPUM_2333(hxlA) Score=5.2 Pos=-111 [Bacillus pumilus SAFR-032]
AAAGTGCGTACTTG
# TF - YodB/CatR: BPUM_3039, BPUM_1875
>BPUM_3530(catE) Score=4.8 Pos=-90 [Bacillus pumilus SAFR-032]
AGTTACTAAAAGTAACA
>BPUM_3530(catE) Score=4.3 Pos=-127 [Bacillus pumilus SAFR-032]
AATTACTTGAAATAAGT
>BPUM_1875(yodB) Score=5.5 Pos=-81 [Bacillus pumilus SAFR-032]
ACTTACTTATTGTAACT
>BPUM_1077(spxA) Score=4.6 Pos=-106 [Bacillus pumilus SAFR-032]
ACTTACTTTTTTATAGT
>BPUM_1876(yodC) Score=5.5 Pos=-75 [Bacillus pumilus SAFR-032]
AGTTACAATAAGTAAGT
# TF - PadR: BPUM_0713
>BPUM_0713(padR) Score=6.9 Pos=-77 [Bacillus pumilus SAFR-032]
AAACATGTCGTGATTTACATGTTT
>BPUM_0712(padC) Score=6.9 Pos=-59 [Bacillus pumilus SAFR-032]
AAACATGTAAATCACGACATGTTT
# TF - GbsR (YuaC): BPUM_2736
>BPUM_2735(gbsA) Score=6.4 Pos=-53 [Bacillus pumilus SAFR-032]
GTTAAATTTTTATTTAAC
# TF - YhgD: BPUM_0961
>BPUM_0961(yhgD) Score=6 Pos=-39 [Bacillus pumilus SAFR-032]
TGACCAAAACGTTCAAATAGTCA
>BPUM_0962(yhgE) Score=6 Pos=-47 [Bacillus pumilus SAFR-032]
TGACCAAATTGTATATTTAGTCA
# TF - KdgR: BPUM_3245
>BPUM_3246(kduI) Score=5.8 Pos=-65 [Bacillus pumilus SAFR-032]
CTTGAAACCGATACCAAA
>BPUM_3246(kduI) Score=5.5 Pos=-226 [Bacillus pumilus SAFR-032]
TTCGAAACCGATTTCAAA
>BPUM_3245(kdgR) Score=5.5 Pos=-54 [Bacillus pumilus SAFR-032]
TTTGAAATCGGTTTCGAA
>BPUM_3244(kdgK) Score=6 Pos=-33 [Bacillus pumilus SAFR-032]
TTTGAAACCGGTACCAAG
>BPUM_3245(kdgR) Score=5.8 Pos=-215 [Bacillus pumilus SAFR-032]
TTTGGTATCGGTTTCAAG
# RNA - FMN
>BPUM_2061(ribE) Score=121 Pos=-255 [Bacillus pumilus SAFR-032]
AAGAAAGCTATGAACGAAAAATATTTGTTAATCATAGTTTTATTTCTGATGCAAAAAAGCCACAGCCCCGGAATTTTTCCGGGGCTTTCTGTATGTACATGTAGTGAATAGACCGGCATGCAGTGTTTATTAGGTGATCCCTCA
>BPUM_2038(ribU) Score=123.8 Pos=-146 [Bacillus pumilus SAFR-032]
AGGTTCGTAAACGTTGAAAACTGAGTTTTTCACACGTTTATTTGTCTAGCCTAAATTCCCCGCTCCTGTTTTCATGAGCGGTTTTTTTGTGGCTGAAATTGAACAATCCTCTTTTCGTTAGATTTGATCGAAA
# RNA - TPP
>BPUM_3574(tenA) Score=80.4 Pos=-192 [Bacillus pumilus SAFR-032]
AAAAGTCCACTAGGGGAGTCATGTATGACTGAGACAAGAGGAAATCTTGGACCCTTTGAACCTGATCTAGTTTGTACTAGCGGAGGGAAGTGGAGCTGGACCTCG
>BPUM_1094(tenA) Score=84.3 Pos=-187 [Bacillus pumilus SAFR-032]
TGATCCACTAGGGGAGTCCTTTAAAAGGGCTGAGATAAAAGTATTGACTTTTAGACCCTCATTACCTGAACAGGTTCATACCTGCGTAGGGAAGTGGTGCGGTTTTTGACT
>BPUM_2421(thiC) Score=80.1 Pos=-238 [Bacillus pumilus SAFR-032]
TAAATGTGACTAGGGGTGCCCGAGGCTGGGCTGAGAGAGAAGTGTATACTTCTTAACCCTTTGGACCTGATCTGGCTCGTACCAGCGTGGGGAAGTTGAAGATGATACAT
>BPUM_2725(thiT) Score=59.3 Pos=-199 [Bacillus pumilus SAFR-032]
ATAACCGCAGGGGGAGCTTTGTGCTGAGAGTGAACACTTGTTGTTCTGACCCTTTGAACCTGTCAGTTAATACTGAAGTAGGAATGTGGATTCATTTGAATAC
# RNA - Cobalamin
>BPUM_1215(metE) Score=113.9 Pos=-345 [Bacillus pumilus SAFR-032]
AATTCATAGTTTGAGAGTCGGTAATTCGATCACACGTCGAATTTTAAATGGGAAGACCGGTGAAAATCCGGCGCGGTCCCGCCACTGTGAGTGAGGAGAGCTTTTCTAATGAATCCACTGTCATCAGGACGGGAAGGATGAAAAGCTTGCAGATTCACCAGCCAGGATACCAGCCGCTCTATCACATCAAACC
# RNA - PreQ1
>BPUM_1263(queC) Score=46.5 Pos=-203 [Bacillus pumilus SAFR-032]
CGGGAGAGGTTCTAGCAAAACCCTCTATAAAAAACTAAGGACTTGC
# RNA - SAM
>BPUM_3562(metE2) Score=79.4 Pos=-199 [Bacillus pumilus SAFR-032]
CCTTATTAAGAGTGGTGGAGGGACTGGCCCTGTGAAACCCGGCAACCGCTGTTCCTCGGAACAGAATGGTGCTAATTCCTTAAGCAAGCAGATGCTTGTTTGAAGATAAGGCAG
>BPUM_1456(cysH) Score=90.1 Pos=-336 [Bacillus pumilus SAFR-032]
ACTTATCCAGAGAGGTGGAGGGACTGGCCCGATGAAGCCCGGCAACCTGCGATATGCAAGGTGCTACTTCCTGCAAAATGATTCTATTTTGAAAGATAAGGAAA
>BPUM_1252(mtnW) Score=86.4 Pos=-173 [Bacillus pumilus SAFR-032]
TCTTATCAAGAGTAGGCAGAGGGACTAGCCCAATGAAGCCCGGCAACCGACTTCTATGAAGCACGGTGCTAATTCTTGCAGCAAGCGCTGAGAGATAAGATTC
>BPUM_1250(mtnK) Score=62 Pos=-239 [Bacillus pumilus SAFR-032]
TCTCTTATCGAGAGTTGGGCGAGGGATTTGGCCTTTTGACCCCAACAGCAACCGACCGTTAATACCACTGTGAAGTGGGGCGCAGCAAGTAAGCGCCAAGACAATTGTCTTATAGGGCACGGTGCTAATTCCATCAGACGTATGTGCTGAGAGATAAGAG
>BPUM_3498(mtrB) Score=94.7 Pos=-280 [Bacillus pumilus SAFR-032]
TCTCTTATCAAGAGAGGCAGAGGGACTGGCCCTATGACGCCCGGCAACCGTTTCTACTATAGAAATTGGTGCTAATTCCTGCAAAGCTGTGACAGCTTTGACAGATAAGAG
>BPUM_2686(metK) Score=72.2 Pos=-330 [Bacillus pumilus SAFR-032]
ACTCTTATCCCGAGTTGGTGGAGGGACAGGCCCGATGAAGCCCAGCAACCGGTTTCTTATGAAAAGGCATGAATATGCTGAGAAACCAAGGTGCTAACCTGATGCAAGGTACAAGAACACCTTGAGCGATAAGAG
>BPUM_2932(metN) Score=86.4 Pos=-264 [Bacillus pumilus SAFR-032]
TCTCTTATTAAGAGAGGTGGAGGGACGTGCCCTATGAAACCCGGCAACCGTCAGCATAGCTGAAATTGGTGCCAATTCACTCAAAGCCGCAATGCTTTGAAAGATGAGAG
>BPUM_1119(metI) Score=92.6 Pos=-200 [Bacillus pumilus SAFR-032]
TCTTATCGTGAGAGGTGGAGGGACTGGCCCTTTGAAACCTCAGCAACCGGTATGCATCACTTCATGTGATGTACCAAGGTGCTAAATCCAGCAAGCAGCTTTTTTGCTTGGAAGATAAGAGGA
>BPUM_1027(metF) Score=96.7 Pos=-198 [Bacillus pumilus SAFR-032]
TTTCTTATCAAGAGAGGCAGAGGGACTGGCCCTGTGAAGCCTCAGCAACCGGTGTAGTAGAAATCTATTTTCTATGACCAAGGTGCTAAATCCAGCAAGCAACTGCTTGGAAGATAAGAA
# RNA - Lysine
>BPUM_2505(lysC) Score=137.1 Pos=-319 [Bacillus pumilus SAFR-032]
TGTTGAAGATAGAGGTGCGAACTTCAAGAGTAAGCCTTCAGAGATCGATGGGATCTAGGAAGAGGGCTGAAAGGGGAGCGTCGCCGAAGCGAATAAAATCCACTCATTTTATTCGCTGGCTGTACATTGAAGAAATGTAGGGCTGTCAAGAATTTATTTCTTGGAGGGCTATCTCATTG
>BPUM_2995(yvsH) Score=115.7 Pos=-369 [Bacillus pumilus SAFR-032]
TCAGTGAGGTAGAGGTTGCGCGGATGATGAGTCACTCATGGGAGAGATGGAATCGAAGATCATGAGAAAAAAGGCATCAGCGCCGAAGTGTATAGAGAGCTCCAACTTTCTTTATGCTGGGTCTGCATTGAATAAATGCAGGACTGCCACGTCTTTGAAGCGTGGAGGGCTATCCGGAGA
# RNA - Glycine
>BPUM_2189(gcvT) Score=35.2 Pos=-201 [Bacillus pumilus SAFR-032]
ACTCTGGAGAGTGTTTGCTCATCGTTTTTTAGCAAACCACCAAAGGGGAAAACGCACAATGATGTTGTGCTGTAAACTTTCAGGTGCAAGGACAGAG
>BPUM_2189(gcvT) Score=62.4 Pos=-312 [Bacillus pumilus SAFR-032]
GATGATGGTATGGGGAGAGACTTGGCGGTTATTTAGCACTGGCAGGCGCCGAAGGAGCAAGCTGAATCGTTTCAGTGAATCTCTCAGGCAAAAGTACTCTTACCGGACG
>BPUM_3652(ydgF) Score=51.9 Pos=-243 [Bacillus pumilus SAFR-032]
AGGAGCAGCTTCTGGAGAGACCGCATATGTGTGCGGCGCCGAAGGGTTCACAATCTCAGGCAAAAGGACAGAAGAGTACGA
# RNA - Purine
>BPUM_0596(purE) Score=80.4 Pos=-270 [Bacillus pumilus SAFR-032]
TGAAATCAAAACACGAACCTCATATAATCTTGGGAATATGGCCCATAAGTTTCTACCCAGTTACCGTAAATGACTGGACTATGCAGGATAGTGAACAAAACTG
>BPUM_1944(xpt) Score=72.5 Pos=-218 [Bacillus pumilus SAFR-032]
ATAATTTGAACACTATAACACTCATATAATCGCGTGATGATGGCACGCAAGTTTCTACCGGACACCGATACTGTCCGACTATGAGTGAGCAAATGAAACAG
>BPUM_0198(pbuE) Score=69.5 Pos=-176 [Bacillus pumilus SAFR-032]
TTTGAAGAAAAAAATAGACTTGTATAACCTCAATAATATGGTTTGAGGGTTTCTACCAGGATCCGATAAATCCTGATTACAAAAGCGTGCTTTCCTTTTTT
>BPUM_0592(pbuG) Score=82.8 Pos=-245 [Bacillus pumilus SAFR-032]
GAAATCAAATAGATAGAAGTCGTATAATAGCGGGGATATGGCCCGCAAGTTTCTACCAAGCTACCGTAAATAGCTTGACTACGTCAATTCACACTCGTTTGAT
# RNA - glmS
>BPUM_0165(glmS) Score=129.4 Pos=-269 [Bacillus pumilus SAFR-032]
TTATAATTATAGCGCCCGAACTAAGCGATCGGACGAAAGATGCTTAGTTGACGAGGATGGAGGTTATCGAAATTTCGGCGGATGCCTCCCGGCTGATCAAAAAGAGATCACAGCCGTAAGTGTTTCTTTAAAGCAAAGAGGTGACTCTTTGTACAAAGGGAATACACATGATCTCCC
# RNA - GEMM_RNA_motif
>BPUM_0319(srfAA) Score=66.4 Pos=-232 [Bacillus pumilus SAFR-032]
GAAGAAAAAGGCAAATCTATGGAAACGTAGAGACGCAAAGCCATGTCCTAAGGTAAATGTTGCTTTTTTACTATGGTCGCCAGGTTACCGAATC
# RNA - PyrR
>BPUM_1447(pyrP) Score=57.6 Pos=-155 [Bacillus pumilus SAFR-032]
ACCTTTTTAAATGCATTCCAGAGAGTTTGCAAAGAGGGCAATAACAGAGACACTGAGCACGGTTAACAAGACGTGTACGGTTTTTCTAGGCCTCTTTGCGCATACTTGCAAAGAGGCTTTTTTAATGA
>BPUM_1446(pyrR) Score=65.3 Pos=-130 [Bacillus pumilus SAFR-032]
GATTCTTTAAAACAGTCCAGAGAGGCTGAGAAGGATAACGGATCAATTTGTGCACGTGTATGCACAAATGAACGCCCCTCTCTGCCCTTTGCAGAAGGGGCTTTTTATTTG
>BPUM_1448(pyrB) Score=63.9 Pos=-154 [Bacillus pumilus SAFR-032]
AAACCTTTTAAAAGAAGTCCAGTGAGGCTGACAAGGGTTCTAAAATGAGCAGAATGCACGAACGTGCCGCTGCTTCTTTTGGAGAACCCTAAGCTGCCGAGGCTTAGGGTTTTTTTGAACC
# RNA - ykoK
>BPUM_1225(mgtE) Score=149.2 Pos=-370 [Bacillus pumilus SAFR-032]
TGAGACTTCGTTAGGTGAGGCTCCTGTATGGAGATACGCTGCTGCCCAAAAATGTCCAAAGACGCCAATGGGTCAACAGAAATCATCGACATAAGGTGATTTTTAATGCAGCTGGATTTTTCCTATGCCATACAGTGCTAAAGCTCTACGATTGAAGGAGCAAGT
# RNA - ylbH
>BPUM_1394(ylbH) Score=108 Pos=-305 [Bacillus pumilus SAFR-032]
CAAAAAAACCCCCGCGGCATCACCCGCGGGGTCCTTCTATTCTTAATGATTCATTAAGGAGAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACTTATGGGGAAACGTAAGTCTTCTCCGCGGTT
# RNA - yybP-ykoY
>BPUM_1236(ykoY) Score=81.1 Pos=-203 [Bacillus pumilus SAFR-032]
ATCCCACCAAAGGGGAGTAGCGTCCGGTTTTTACCGGAAACAAAGTCGTCATTACATGGACTTAAGTTCCATCGGCTTTGTTGGCATGATTCTACATATCACATGTCTAGCAAGACCTTTGCCATTACAGG
>BPUM_3024(yybP) Score=52.7 Pos=-216 [Bacillus pumilus SAFR-032]
ACGGTTTCCTAAAGGGGAGTAGCTTTTACGGTCTGGTCGTCATTACAGAAACATTCGTTGTTTCTCGGCCATTCCGGCATGAACAATGTTAGCCAGACCTTTGCCTATCAC
# RNA - ydaO-yuaA
>BPUM_0421(COG1301) Score=100.1 Pos=-210 [Bacillus pumilus SAFR-032]
ATAACCACACGCTTAATCCTTCTAAAGGAATGGGGGACCCATGTTTTTGGGGTGAATTTTTCTCTGTTGAGAAAAAAGGACATCTCTTCGTCCTAACCCGTCAGCTAACCTCATCGGCGTGAAGAGAGTAAACGG
>BPUM_0406(ydaO) Score=103.8 Pos=-257 [Bacillus pumilus SAFR-032]
AAGACCAATCGCTGAATCATTTCAATGAGCGGGGGAACCAATTGTGGTGGTAAAGCACCACGTGGGGTGAATCCTTTTTAGGTAGGGCAAAGTCTCATGCGCCCGAATCCGTCAGCTAACCTCGTAAGCGTTAAAGAGAGCAAAGAC
# RNA - ykkC-yxkD
>BPUM_1202(ykkC) Score=84.2 Pos=-174 [Bacillus pumilus SAFR-032]
AATTGGTTTTCTAGGGTTCCGTGCGCAGGTGCAGTCTGGTCCGAGAGAAAACACATAGGGTCTTTAAAAGAGACCATATGGACACGGAGGGATAAAAGCCCGGGAGATTT
# RNA - L10_leader
>BPUM_0089(rplJ) Score=76.1 Pos=-209 [Bacillus pumilus SAFR-032]
GAATATGTCCATTTATACCGTAGACAGCAGGGGCCTTATGGCTTAATTAACCCGCCGAGGTGTATATGTCACAGTCTTACGTTAACGTATGCTTGTATATACAGCCTCCATGTCTTATTGGAGGCTTTTTATATGGAGAACC
# RNA - L13_leader
>BPUM_0136(rplM) Score=48.1 Pos=-111 [Bacillus pumilus SAFR-032]
GTATGTATTTCAACCCCACAAATAAGCCCCGGAAGACTTATCTTGTGTTTTGAAATAGAACGT
# RNA - L19_leader
>BPUM_1502(rplS) Score=33.2 Pos=-60 [Bacillus pumilus SAFR-032]
CGATGTTCCGCTGCAATGAAGAAAGAGGACATGAGCATCTGTT
# RNA - L21_leader
>BPUM_2436(rplU) Score=55.8 Pos=-86 [Bacillus pumilus SAFR-032]
ACCCGTGCTACAACCGCGCGAAGCAGGTGTAAAGAGCCTAAGGCCCCCTGTATTCGGCGAGTCTGAGTTTATTA
# RNA - T-box(Ala)
>BPUM_2380(alaS) Score=92.1 Pos=-291 [Bacillus pumilus SAFR-032]
ACTGAATTCAATGACGGACCCGAGTACGTTAAAAAGCTGTTTCAGAGAGAGGCTTTATTTTGCTGAGAAAAGCCTCATCAGACCTTTAACGGAAGCTAGTCCCGAGTGCAGATAAACACTGCCGCTCTCTTCCGGCGTTATCGGATGTGAAGGTGATAGACGAATTTGTCTATAATCAGGGTGGTACCGCGAGAACATCTCGTCCCTGTG
# RNA - T-box(Cys)
>BPUM_0078(cysE) Score=101.5 Pos=-311 [Bacillus pumilus SAFR-032]
GGAAATCGTTGCGAGGGAGAAGTACAATGTTTTCGTCCATCACAGAAAGAGTCTTCACCGGCTGAAAGAGACTTATGGGCAGACGTTGGAAATGCACCCTCAAGACCCTTGAGGAACACGAGTACGTAAGTATGCAAGGGCGGTACCCTCCGTTATGGGATGAAGTTGAGAAGGCTGCGAAATGAGGGCTTTCTAAACAGAGTGGAACCGCGTTTTCAAAACGTCTCTGTCAT
# RNA - T-box(Gly)
>BPUM_2259(glyQ) Score=93.3 Pos=-291 [Bacillus pumilus SAFR-032]
ATATGTTGCATTGACAGAAAGAAGTATTTGCGCAGAATCCATAAAAGCGACCTTAGGGCGGTGTGAGCTAAGGATGGAGGCGTAACGAAAGGCATTCTTGAGCAACGTAAAACAAAGCGGCTGGTTGCTACGATACCAGCAAATAGGGTGGAACCGCGGGAAAAACTCTCGTCCCTATG
# RNA - T-box(Ile)
>BPUM_1442(ileS) Score=107 Pos=-290 [Bacillus pumilus SAFR-032]
GATAAACGTTTGAAAGGGACACTCGCAGTTGTCATATACGTAATAAAGCGAATCAGGGGTGGTGGAAGCCTGACATTACGAGATGCTGCAATGAGATCACCCCTTTAGTTCCTTTTCTGAAATGATCAGTAAGAAAAGGCGTCTGATCACGTTACGATTTTAGAGTGGATAAGCGGCAATAGCGCTTGTCTAAAAGGGTGGTACCGCGAGACAAGCCTTCTCGTCCCTTATGG
# RNA - T-box(Leu)
>BPUM_2669(leuS) Score=123.2 Pos=-185 [Bacillus pumilus SAFR-032]
GATAAGAACAGTGAAGAGGAGTAGTAGGAAAGCAGTATTTGTCTTTAGAGAATTGACGGCTGGTGAAAGTCAATCAAATCTGCTTCTGAACTCGCCTCAGAGTTGCAGTTGCGTTAAAGCTTCTGTCGCATGTCTGCGTTAAAGATATTAAGTGAGCGTACAAACAGAAAGTTACGCTAACAAGGGTGGTACCGCGGGAACCAAAAAATCTCTCGTCCCTTTC
>BPUM_2472(ilvB) Score=127.9 Pos=-370 [Bacillus pumilus SAFR-032]
TCGATAAACGTTGAAGAGGACTAGTAGCTTTAGAGTCAGTATCTACAGAGAGCCGGTGGTAGCTGGAAACCGGTGTTACTTTCTAAAGTGAACTCACCTCTGAGTGTCTGCTTGAAATGATAGTAGGGCAGACCGAGTGACATTGCTCACTCGTTACCAAAATGGATGAAAGATGTCCATAAGACGGCAGCTGAATTTGCCGTGAACAAGGGTGGTACCGCGAAAAACAAAGCTTTTTCGCCCCTTTG
>BPUM_0582(leuA) Score=120.6 Pos=-322 [Bacillus pumilus SAFR-032]
TGAGAATGCGATGATAAGGAATAGTACTTGCCTAAATGTTTTCAGAAAGTTGCTGGTTGATGAGAAGCAATAACAAAAAGGCAGGGAACTCACCTTAGAGTAGCCTTAGTGAAATGAAAAGGATTGATGTAGTTAAGGTCGGCGCCCCACCGTTATATGGGAAGGATATAAGATATAACAATCTGTATCCGAATAAGGGCATGATAATGTAAAGTTATCATGAAACAGGGGTGGTACCGCGTAAGAAGAAGTCTTTCGTCTCCAAG
>BPUM_3159(yvbW) Score=120.8 Pos=-302 [Bacillus pumilus SAFR-032]
ATAAAACGCTTTGACTTGAGAATAGTAAATGAATATCCGTTTTCTAAGAGAGCTGCGGGGTGGTGCAACGCAGTAAAACGAATCATTGAACTCGCTCAAGGAGCGGCAAGACTGAATAAATAAGTAAGTCTTTACGTGTGACCTCCGTTATCGGGTTTCAAGTTGGATTCAGCTATGTCTGAGTCAATAAGAGTGGTAACGCGGTTGCAAGGTCAGTCGTCTCTTCA
# RNA - T-box(Lys)
>BPUM_2348(lysX) Score=72.8 Pos=-295 [Bacillus pumilus SAFR-032]
AGACATAGCGCTAATAGAGAAGAGTACATCATGAACCGTCCCGCACAGAGAACTCCGTGAAGCTGAGAAGGAGCCGGGCAGCATGTTGGAACCAAGCCTCTTAGCTCTGCACCGGATTCTTTCAGATGGTGGTGCAGCGACATTCTCCCGTTACAGAGATGGGTTCATGATAACCTGCTAAGGTTCATTTGGCAACAGATGAATAAACTGAGGTGGCAACGCGGAGTAAATCCCGTCCTCAAG
# RNA - T-box(Met)
>BPUM_3680 Score=110.2 Pos=-382 [Bacillus pumilus SAFR-032]
TAAACAGGCAATGACGAGAGAAAGTACAATCATCAATTTTTCCACAGAGAGCTTCGGTAGCTGAAAAGAAGCAAAAATAATGATTCGAAAAATGGTCTCTGAGCCTCGTACTGAACATATCTATGATATTAGTAGGATACGACGAGAGTTGGTACTCGTTATCAAAACCACAGTATATGAGCCAGATTGGAGCTTTGTACTTGTAGAGGCTGTTTAGCGCGAGCAAACAGTAAATAAAGGTGGTACCACGAGACAAATACCTCGTCCTTATG
# RNA - T-box(Phe)
>BPUM_2522(pheS) Score=73.1 Pos=-334 [Bacillus pumilus SAFR-032]
TTTAAAAACCATGATAGAGGAAGATTGTTTCAAGGAGCGGCCTTATAGGGAGAATGCATCGTAGACTGAAAGTGCATTTAAGGAATGCGGAAACAGGAATTCACCTCTGGAGTTGTCACCGGGACCGCAAGCTTTGCGTAAAGGTGAACCGGATTCGTTTGATTCCGTTATGTCAATGAAGCTTATTCGCACATGTATTTGTGCTTAACAAGGGTGGTACCGCGACCACAACTCGTCCCTTCT
# RNA - T-box(Pro)
>BPUM_1207(proB) Score=123.5 Pos=-274 [Bacillus pumilus SAFR-032]
AACGAGCGTTGAAAAGGAATAGTAAGCAAGAACTGATGCGTAAAGAGAGCAAATGACATGCTGAAACATTTGCCGCAGACAGCTGCTGAACCTGCCCTTTGAGCCTTAGAGGAAAAATCTAAGCGCATGCCTGGCGTTACAGGAATTGAGTGGAATAAGCTGGATGTATGCTTATTCAATGAAGGTGGTACCACGGAAAATCCCTTTTTCGTCCTTTACAT
>BPUM_2109(proI) Score=100.1 Pos=-252 [Bacillus pumilus SAFR-032]
GATGTGCGATGACAAGGATTAGTAAGCAAAATAATGATGCAAGAGAGTGAGGTCCACCGGCTGTAAGACCTCACCATCCTCTTTTTTGCTGAACCTACCCTTTGAGCTGTTAGGCAAACCTAAACGTTTCCCGCGTTAAGGGACTAGAGCTGAGTATGCATATTTGCATGCTAATTGAGGGTGGTACCGCGAAAAACCTTTCGTCCTTTTCAG
>BPUM_0197(proS2) Score=95.4 Pos=-239 [Bacillus pumilus SAFR-032]
TTCATCAACGTAGATCTGGAATAGTAGCTTGAATTGACCTTTAACAGAGAGGGAACGGTGCTGAGAAGTTCCTACTGACATCTTCAAGTGAACCTGCCGATTTAGTTCTGTTTCATACAGCGGTTCATACCGTTATCATGATCAAGTGTAAAGCTGTGCTTTAAATTAGGGTGGTACCACCAGGAATGGTCCCTAAC
# RNA - T-box(Ser)
>BPUM_0509(serS) Score=136 Pos=-265 [Bacillus pumilus SAFR-032]
AAAAAGCGTTGACGGGAAATAGTAAGAAGCCCCTCTTTCTCAGAGAGCCGATGGTTGGTGCGAATCGGTGAAAGATGCAGTCTGAATCCATCCTTGAGCGAAATGCTGAAACACGAGAAGTAAGCATTTACGGTGATACCGTTACAGAGGAAAGAGGAAAGCATGCTTCTGCATGTTTTCAATCAGGGTGGCAACGCGAGAGCTCTCGTCCCTTTCAT
# RNA - T-box(Thr)
>BPUM_2539(thrS) Score=94.5 Pos=-294 [Bacillus pumilus SAFR-032]
AGAGACCGTATTGATAAGGACATGAACAAATGAACACCCGCTTAAAGAGAGGGAAGCCGAGGCTGAAAGCTTCCTAGCAGAGGACCATTTGCTTTACCACCTTTGAACATCAGCTGTGAACGTTTTAGTAATGGCTGACGGGGATTCCCGTTATCGAACCACAAGCCGTGTTTGCTTATGAAAAAGTAAGCTGCAAATACGGGAAAAAGGGTGGAACCACGATTCCGTTTTATTCAACCTCGTCCCTTTC
>BPUM_0761(thrZ) Score=99.1 Pos=-266 [Bacillus pumilus SAFR-032]
TCATTGCTTTGAAAAGGACATGAGCAGCTTTTATCGGTTACCAGAGAGGGAAGTCACGCTGAAATCTTCCTAACGCAGAAAAGTTGTCTTACCACCTTCGAGCTGTATTGGGGAAAATTGAAGTATCCAATACCGACTATGCCACGTTACGGCACCAGAGCCATAAAGCGAGTATGCATTATGGGAATTTGGGTGGAACCACGGATTACACATTCGTCCCTTTACA
# RNA - T-box(Trp)
>BPUM_1068(trpS) Score=126.8 Pos=-273 [Bacillus pumilus SAFR-032]
TACTGTTGCGATGAAAAAGAAGAGTACATATATTCACCATTTATAGAGAGTCTGCGGTCGGTGCGAGCAGTCAATGGCATATATGGAATGGGCTTTGGAGCAGCTAACCGAACACTTTTGAAAGTAAGTAGGCTTAGACGGAGCAGTCTCCGATATCAACGTCTTGAGTGATTTCCATGTGAAATAACAAGGGTGGTACCACGGTTCATTCGTCCCTTTT
# RNA - T-box(Tyr)
>BPUM_2615(tyrS) Score=133.1 Pos=-292 [Bacillus pumilus SAFR-032]
TATAAAGGTTTTGACTGAGATTCAGTAGAATCATCTTTCCCTGTCCAAGAGAGCTGACGGTTGGTGCGAGTCAGTACAAAGAGATATTCGAATTACCCTCACGAACCGCTTTTACGAAAAGGAGCATGCATGCTGTTCTGATTAGTGAAAGAACGGATCTGTCCGTTATCAGTGTAAGTGAAAAGACGTGATGTATTGTCTTTTAAGCAGGGTGGTACCGCGATATATATCGTCCCTTCG
# RNA - T-box(Val)
>BPUM_2449(valS) Score=112.2 Pos=-290 [Bacillus pumilus SAFR-032]
ATCATAAGCGTGGATCAGGAAGAGTACGAGCAAGACCCTAAAGAGAGGGAGACCATGTGCTGAAAGGTTTCCTAGGATGTACTTGTTTGGAAGGTCGCCTGTGAGCTTAATTTCTTGAATGAACAAGTAGAGAAATTCGGGAGAACCCCGTTATCCTTTAGAGTGTATGGGACACGTGTATGTGTCTCGTGAAAAAAGGTGGTACCGCGAAAAAGCTTTTTCGTCCTTTTA
# TF - MalR: BPUM_2821
>BPUM_2827(maeN) Score=8.3 Pos=-96 [Bacillus pumilus SAFR-032]
TTATTTTACTT---------TTAATTTAGTT
>BPUM_3348(ywkA) Score=0.5 Pos=-209 [Bacillus pumilus SAFR-032]
AAATTAAATAA---------AAATTATCTAA
# TF - GlnL: BPUM_0246, BPUM_3016
>BPUM_3019(gltT) Score=8.5 Pos=-90 [Bacillus pumilus SAFR-032]
TTTTGT----TTTTGT
>BPUM_3019(gltT) Score=8.5 Pos=-80 [Bacillus pumilus SAFR-032]
TTTTGT----TTTTGT
>BPUM_0244(glsA1) Score=6.6 Pos=-284 [Bacillus pumilus SAFR-032]
TTCTGT----TTTCGT
# TF - YvbF/YvaV: BPUM_3044
>BPUM_3043(opuCA) Score=7.4 Pos=-89 [Bacillus pumilus SAFR-032]
TAAACTTTTTATTTTATAAAGTTTG
>BPUM_3044(yvaV) Score=7.4 Pos=-205 [Bacillus pumilus SAFR-032]
CAAACTTTATAAAATAAAAAGTTTA
# TF - PutR: BPUM_0302
>BPUM_0300(putB) Score=6.7 Pos=-114 [Bacillus pumilus SAFR-032]
TTGTGATAAAACCACAA
# TF - LiaR: BPUM_2963
>BPUM_2968(liaI) Score=4.6 Pos=-100 [Bacillus pumilus SAFR-032]
TTACGACTCTGGTCGCAA
# TF - YrkD: BPUM_0189
>BPUM_0190(yrkE) Score=5.6 Pos=-75 [Bacillus pumilus SAFR-032]
ATACCCTTACCGGTAT
>BPUM_0189(yrkD) Score=5.2 Pos=-46 [Bacillus pumilus SAFR-032]
ATACCGCTTAGGGTAT
>BPUM_0190(yrkE) Score=5 Pos=-35 [Bacillus pumilus SAFR-032]
ATACCCCCATAGGTAA
# TF - LytT: BPUM_2535
>BPUM_2534(lrgA) Score=7.5 Pos=-104 [Bacillus pumilus SAFR-032]
TTTCTGCATTTC---------ATCCGGCGAGTT
>BPUM_2534(lrgA) Score=9 Pos=-125 [Bacillus pumilus SAFR-032]
TATTTGTATTTC---------TTTCTGCATTTC
# TF - YcxD: BPUM_0326
>BPUM_0325(ycxC) Score=12.9 Pos=-120 [Bacillus pumilus SAFR-032]
CCTTGTACC-(0)-GGTACAGAT-(12)-TATTGTACA
# TF - BH0651: BPUM_0174
>BPUM_0174(BH0651) Score=8.4 Pos=-73 [Bacillus pumilus SAFR-032]
TGTATATAATGTATATATAGTATATATACAATATTTTGT
# TF - GabR: BPUM_0361
>BPUM_0362(gabT) Score=12.5 Pos=-86 [Bacillus pumilus SAFR-032]
TACCAT-(13)-TTGGTA-(10)-TACCAA