# TF - TyrR: HAPS_1204
>HAPS_1204(tyrR) Score=6.1 Pos=-84 [Haemophilus parasuis SH0165]
TTGTAAACAAAAATTTCCAA
>HAPS_1274(aroF) Score=4.8 Pos=-35 [Haemophilus parasuis SH0165]
CTGTATTGATTTTTTTACAA
>HAPS_0526(tyrP) Score=5.2 Pos=-174 [Haemophilus parasuis SH0165]
TTGTAAAAGAAAGTTTACTA
>HAPS_0525(tyrP) Score=5.6 Pos=-89 [Haemophilus parasuis SH0165]
GTGTAATTATTTTTTTACAT
# TF - ArgR: HAPS_0980
>HAPS_1066(artP) Score=4.4 Pos=-65 [Haemophilus parasuis SH0165]
CTTGCATAGTTATGCAAT
>HAPS_1066(artP) Score=4.1 Pos=-117 [Haemophilus parasuis SH0165]
TATGTATTTTAATTTTTT
>HAPS_1066(artP) Score=4.2 Pos=-44 [Haemophilus parasuis SH0165]
ATTTAATATCTATTCAGT
>HAPS_0797(argH) Score=5.4 Pos=-86 [Haemophilus parasuis SH0165]
ATTGCATAATTATGCATA
>HAPS_0797(argH) Score=4.5 Pos=-107 [Haemophilus parasuis SH0165]
TATAAATAATTATTGAGT
>HAPS_1892(carA) Score=4.3 Pos=-282 [Haemophilus parasuis SH0165]
AATTCAAATTTATTCATT
>HAPS_1892(carA) Score=4.8 Pos=-183 [Haemophilus parasuis SH0165]
GTTGAATAAAAATGCATT
>HAPS_1892(carA) Score=4.7 Pos=-162 [Haemophilus parasuis SH0165]
TTAACATAATTATTTATT
# TF - FabR: HAPS_1805
>HAPS_1695(lcfH) Score=4.7 Pos=-90 [Haemophilus parasuis SH0165]
AGCTTACATTTGTTCGCA
>HAPS_2242(fabA) Score=6 Pos=-109 [Haemophilus parasuis SH0165]
AGCTTACAACTGTTAGCT
>HAPS_1695(lcfH) Score=5.4 Pos=-37 [Haemophilus parasuis SH0165]
AGCGAACATTTGTAAGCT
# TF - NrdR: HAPS_0172
>HAPS_1168(nrdG) Score=5 Pos=-55 [Haemophilus parasuis SH0165]
CTACTACATATTGTGT
>HAPS_1168(nrdG) Score=5 Pos=-23 [Haemophilus parasuis SH0165]
CCACAAGATATAGTGG
>HAPS_1341(nrdB) Score=5.4 Pos=-203 [Haemophilus parasuis SH0165]
CCACTATATCTTGTGT
>HAPS_1341(nrdB) Score=5.1 Pos=-172 [Haemophilus parasuis SH0165]
ACACAAGATATAGTTT
# TF - FadR: HAPS_0101
>HAPS_0037(fadL) Score=5.3 Pos=-142 [Haemophilus parasuis SH0165]
GACTGGTCGGAACTGTG
# TF - IscR: HAPS_0052
>HAPS_0052(iscR) Score=6 Pos=-70 [Haemophilus parasuis SH0165]
AATATTGACTAAATTAGTAGGGTAT
# TF - SiaR: HAPS_0407
>HAPS_2072(nagB) Score=5.3 Pos=-42 [Haemophilus parasuis SH0165]
AATGAAGTTTTATTTCAAA
>HAPS_0408(yhcH) Score=4.8 Pos=-80 [Haemophilus parasuis SH0165]
TATGGAGTATATTTTCTTT
>HAPS_0408(yhcH) Score=4.4 Pos=-153 [Haemophilus parasuis SH0165]
AATCAAGTAAATTGTGATT
>HAPS_1216(nanE) Score=4.6 Pos=-43 [Haemophilus parasuis SH0165]
TTTGGAGTAAATTTTCTTT
>HAPS_1216(nanE) Score=4.1 Pos=-191 [Haemophilus parasuis SH0165]
AATCGATTAAAACTCGTTT
# TF - Fur: HAPS_2260
>HAPS_2276(icdA) Score=4.8 Pos=-193 [Haemophilus parasuis SH0165]
TAAAATTATTTTCATTATT
>HAPS_1572(hmuT) Score=4.1 Pos=-34 [Haemophilus parasuis SH0165]
TAAAATAAGAACCTTTATC
>HAPS_1651(tyrS) Score=4.1 Pos=-157 [Haemophilus parasuis SH0165]
GATAATTATTATCATCTAG
>HAPS_1651(tyrS) Score=4.8 Pos=-163 [Haemophilus parasuis SH0165]
CTTTATGATAATTATTATC
>HAPS_1569(cjrA) Score=5.4 Pos=-69 [Haemophilus parasuis SH0165]
TAAAATGATAATTATTATC
>HAPS_1569(cjrA) Score=4.6 Pos=-63 [Haemophilus parasuis SH0165]
GATAATTATTATCAATTGA
>HAPS_1055(hugX) Score=5.3 Pos=-135 [Haemophilus parasuis SH0165]
ATAAATAATAATCATTATC
>HAPS_1097(sitA) Score=4.8 Pos=-92 [Haemophilus parasuis SH0165]
GTTATTGAGAATCATTTTT
>HAPS_1097(sitA) Score=4.4 Pos=-86 [Haemophilus parasuis SH0165]
GAGAATCATTTTTATTTGT
# TF - TrpR: HAPS_0251
>HAPS_1997(trpE) Score=6.7 Pos=-47 [Haemophilus parasuis SH0165]
TATACTAGTTTAATAGTACA
>HAPS_1139(HAPS_1139) Score=5.7 Pos=-26 [Haemophilus parasuis SH0165]
TGTACTAGTAAAATAGTATT
>HAPS_0395(HAPS_0395) Score=6.6 Pos=-52 [Haemophilus parasuis SH0165]
TGTACTATTTTAATAGTACA
# TF - PurR: HAPS_0522
>HAPS_0494(purE) Score=5.9 Pos=-67 [Haemophilus parasuis SH0165]
AGGCAAACGTTTGCTT
>HAPS_0920(purM) Score=6.3 Pos=-61 [Haemophilus parasuis SH0165]
ACGCAAACGTTTGCTT
>HAPS_1044(rpiA) Score=6.3 Pos=-29 [Haemophilus parasuis SH0165]
ACGCAAACGTTTGCTT
>HAPS_0698(cvpA) Score=6.1 Pos=-65 [Haemophilus parasuis SH0165]
ACGCAAACGTTTTCTT
>HAPS_1463(purC) Score=6 Pos=-64 [Haemophilus parasuis SH0165]
TAGCAAACGTTTGCGT
>HAPS_0034(purH) Score=6.1 Pos=-263 [Haemophilus parasuis SH0165]
ACGCAAACGATTGCGT
>HAPS_1379(purD) Score=6.3 Pos=-61 [Haemophilus parasuis SH0165]
ACGCAAACGTTTGCTT
>HAPS_0379(glyA) Score=5.7 Pos=-29 [Haemophilus parasuis SH0165]
ACGCAAACGATTACTT
>HAPS_1978(purL) Score=6.1 Pos=-68 [Haemophilus parasuis SH0165]
ATGCAAACGTTTGCGT
>HAPS_0140(yjcD) Score=5.7 Pos=-173 [Haemophilus parasuis SH0165]
GCGCAAACGATTGCTT
# TF - RbsR: HAPS_1628
>HAPS_1629(rbsD) Score=6.3 Pos=-40 [Haemophilus parasuis SH0165]
TCATCGAAACGTTTCGATGG
# TF - ModE: HAPS_1455
>HAPS_1455(modE) Score=6.1 Pos=-119 [Haemophilus parasuis SH0165]
AACAATATATAAACTATTATATAACGAA
>HAPS_1456(modA) Score=6.6 Pos=-152 [Haemophilus parasuis SH0165]
TTCGTTATATAATAGTTTATATATTGTT
# TF - AgaR: HAPS_0195
>HAPS_0195(agaR) Score=4.8 Pos=-98 [Haemophilus parasuis SH0165]
TTTTCGAATATTTTCG
# TF - LexA: HAPS_0014
>HAPS_1355(recN) Score=5.7 Pos=-61 [Haemophilus parasuis SH0165]
TACTGTGTATAAAAACAGTG
>HAPS_1355(recN) Score=4.6 Pos=-40 [Haemophilus parasuis SH0165]
TACTATATACTCATACAGTG
>HAPS_1186(recA) Score=5.3 Pos=-84 [Haemophilus parasuis SH0165]
AACTGTATGGTTAAACAGTA
>HAPS_0014(lexA) Score=5.5 Pos=-28 [Haemophilus parasuis SH0165]
TTCTGTATATAAAGACAGTG
>HAPS_1067(uvrD) Score=4.9 Pos=-30 [Haemophilus parasuis SH0165]
CACTGTATAAAATCACATAA
>HAPS_0014(lexA) Score=4.7 Pos=-50 [Haemophilus parasuis SH0165]
TACTGTATATAATGTCATAA
>HAPS_2014(radA) Score=4.9 Pos=-67 [Haemophilus parasuis SH0165]
CCCTGTGCATTTACACAGTG
>HAPS_0372(ssb) Score=5.4 Pos=-191 [Haemophilus parasuis SH0165]
AACTGTACAAAATATCAGTT
>HAPS_2271(impA) Score=5.3 Pos=-62 [Haemophilus parasuis SH0165]
CACTGTGTGTTTAAACAGTA
>HAPS_2271(impA) Score=5.5 Pos=-38 [Haemophilus parasuis SH0165]
AACTGTATAAACACACAGAT
>HAPS_2271(impA) Score=4.7 Pos=-102 [Haemophilus parasuis SH0165]
ACCTGTAAAAATTTACACTA
# RNA - His_leader
>HAPS_0311(yuiF) Score=51.4 Pos=-195 [Haemophilus parasuis SH0165]
ACCGTCATCACCATTTACCTGAATAATCTTTCGGGCATTTGGCGTGTTCGGAAGAAACTTCCGAGCGGTGCAAAATGAGAGTAGATCTAAAAACCAATTTCCACCCCTTCGGAAGATGATTTCGAAGGGGTTCTTTT
# RNA - Lysine
>HAPS_1122(lysW) Score=138.4 Pos=-297 [Haemophilus parasuis SH0165]
CAAATTGTAGAGGTGCGAATGCGATAAGTATTCTTTCAGAGTGGAAAACGATGAAGAAAGAGGAAAGGCGTATTCGCCGAAATCAATTAAGCGTCATCTTAATTGGTTGGTATCGTTATCGAAAGGAACGATACTGTCATAGCGGAGGCTATGGAGTGCTACTGTTAGGCT
# RNA - PreQ1
>HAPS_1387(queC) Score=46.4 Pos=-49 [Haemophilus parasuis SH0165]
TTCAACCGTGGTTCGCAAACCTCCCACGCAAAAAAAACTAAGGAACA
# RNA - FMN
>HAPS_1134(ribD) Score=106.1 Pos=-377 [Haemophilus parasuis SH0165]
TTAATCTTCAGGGCAGGGTGAAATTCCCGATCGGCAGTAAAGTCTGCGAGCGGCGGCGAAAGCCAAAGCAGGAACTGGTGAAATTCCAGTACCGACAGTGATAGTCTGGATGGAAGAAGAGCTAGAA
# RNA - S15
>HAPS_1131(rpsO) Score=105.7 Pos=-67 [Haemophilus parasuis SH0165]
GTGTCGTAGCTGAATTAGAGATCGGCTATTGATGAATATAAACTTAACTACTTTTTAGGAGTAAAAAATGTCTCTAAGCGTAGAAGCAAAAGCAAAAATCGTTGCTGAATTTGGTCGTGATGCA
# RNA - MOCO_RNA_motif
>HAPS_0436(moaA) Score=81.2 Pos=-124 [Haemophilus parasuis SH0165]
ACATTATCCGACCCCGAGCCTGTTTTCCTAAGTCTAGCGATATGGAAACTGTGCCTGTAATTGATTGATTACACAGGGAAAGTTGAGAAATCGGCTCTCCTCTCATATTTAGAAAGGTGTCACATTGCAAATCCCAA
# RNA - Thr_leader
>HAPS_1271(thrA) Score=37.9 Pos=-154 [Haemophilus parasuis SH0165]
TATGATTATTACCACGACGATGACCATTATGTGCAAACATAGTGCGGGTGTTCGTGGCTAGAAAACGGAACAATATTCAACGAAACCCGCTTTAACAAGCGGGTTTTTTTGTAAC
# RNA - Glycine
>HAPS_1007(glyP) Score=56.9 Pos=-242 [Haemophilus parasuis SH0165]
CCTTGGAGAGATCCACTCTGCATAGCAGAAAATGGACGCCGAAGGCGAAAGCAATGAATGCGAAACGCTCAGGCAAAAGGACAGGGGAG
>HAPS_1007(glyP) Score=46.3 Pos=-329 [Haemophilus parasuis SH0165]
TGAAGATAGCTGGAGAGTGGGGAATAACCCTACACCGACGAGGTAAAATCTTTCAGGTGCGACAGCGAGGACAGCTATTGGACGAA
# RNA - TPP
>HAPS_1841(thiM) Score=69.6 Pos=-262 [Haemophilus parasuis SH0165]
GACATTTAAGTCGGGGTGCTGCCAAAAGCGGCTGAGAAATACCCGTGAACCTGATACAGTTAATACTGGCGTAGGAAACTTATGAATATCATCT
>HAPS_1254(thiB) Score=63.4 Pos=-146 [Haemophilus parasuis SH0165]
TGTTCTCATCGGGGTGCTTTGTATAGCAAGGCTGAGAAATACCCATAGAACCTGATCTGACTAATATCAGCGTAGGGATTTGAGACAGACAATCTATA
# TF - GntR: HAPS_1789
>HAPS_1788(gntK) Score=6.3 Pos=-179 [Haemophilus parasuis SH0165]
AATTGTTACTGGTAACATAT
>HAPS_1788(gntK) Score=5.6 Pos=-40 [Haemophilus parasuis SH0165]
TTCAGTTATCGGTAACATTT
>HAPS_1787(gntU) Score=6.3 Pos=-38 [Haemophilus parasuis SH0165]
ATATGTTACCAGTAACAATT
>HAPS_1787(gntU) Score=5.6 Pos=-177 [Haemophilus parasuis SH0165]
AAATGTTACCGATAACTGAA
# TF - CueR: HAPS_1832
>HAPS_1832(cueR) Score=4.4 Pos=-78 [Haemophilus parasuis SH0165]
AGCCTAACCTTATGTTAGGGT
# TF - CadR-PbrR: HAPS_1830
>HAPS_1831(czcD) Score=5.7 Pos=-61 [Haemophilus parasuis SH0165]
ACCCTGTAATGACTACGGAGT
# TF - MetJ: HAPS_2077
>HAPS_0500(metK) Score=5.8 Pos=-161 [Haemophilus parasuis SH0165]
AGCCATCTAGACGGAA
>HAPS_2275(metF) Score=7.7 Pos=-86 [Haemophilus parasuis SH0165]
AGCCATCTAAACGTCT
>HAPS_0134(metX) Score=7.8 Pos=-107 [Haemophilus parasuis SH0165]
AGACGTTTAGATGTCT
>HAPS_0134(metX) Score=6.5 Pos=-123 [Haemophilus parasuis SH0165]
AGCCATTTAAAAATCT
>HAPS_1354(metE) Score=7.6 Pos=-64 [Haemophilus parasuis SH0165]
AGCCATTTAGACGGCT
>HAPS_1354(metE) Score=7.3 Pos=-56 [Haemophilus parasuis SH0165]
AGACGGCTAAACGTCT
>HAPS_0448(metN) Score=7.8 Pos=-61 [Haemophilus parasuis SH0165]
AGCAATCTAGACGTCT
# TF - MetR: HAPS_2191
>HAPS_2275(metF) Score=5.2 Pos=-154 [Haemophilus parasuis SH0165]
ATAAATTAAATTCAT
>HAPS_2275(metF) Score=4.4 Pos=-186 [Haemophilus parasuis SH0165]
TTTAAAAATTTTCAT
>HAPS_1354(metE) Score=5.4 Pos=-136 [Haemophilus parasuis SH0165]
ATGAAAAATTTTCAT