# TF - TyrR: NT05HA_0604 >NT05HA_0604(tyrR) Score=5.8 Pos=-83 [Aggregatibacter aphrophilus NJ8700] CTGTAAATAAAAGTTGCCAA >NT05HA_0124(tpl) Score=4.5 Pos=-170 [Aggregatibacter aphrophilus NJ8700] ATTTAAATTAAATTTAACAA # TF - FabR: NT05HA_2007 >NT05HA_1266(fabB) Score=4.3 Pos=-51 [Aggregatibacter aphrophilus NJ8700] AGCTAACAAATGTAAGTC >NT05HA_0871(fabA) Score=6.2 Pos=-101 [Aggregatibacter aphrophilus NJ8700] GGCGTACAAGTGTTAGCT >NT05HA_0066(lcfH) Score=5.7 Pos=-36 [Aggregatibacter aphrophilus NJ8700] AGCGCACAACTGTTAGCT # TF - ArgR: NT05HA_1110 >NT05HA_0201(artP) Score=5.2 Pos=-73 [Aggregatibacter aphrophilus NJ8700] GTTGCATAATTATTCATA >NT05HA_1110(argR) Score=4 Pos=-80 [Aggregatibacter aphrophilus NJ8700] AAAGCCTAAATAATAATT # TF - NrdR: NT05HA_1103 >NT05HA_0064(nrdD) Score=4.9 Pos=-54 [Aggregatibacter aphrophilus NJ8700] TATCTATATATAGTAT >NT05HA_0064(nrdD) Score=5.3 Pos=-86 [Aggregatibacter aphrophilus NJ8700] ACACTATATGTTGTGT >NT05HA_0693(nrdA) Score=5 Pos=-50 [Aggregatibacter aphrophilus NJ8700] CAACTATATGTTGTGT >NT05HA_0693(nrdA) Score=4.8 Pos=-81 [Aggregatibacter aphrophilus NJ8700] ACACATTATCTTGTGC # TF - FadR: NT05HA_2364 >NT05HA_0160(fadL) Score=5.6 Pos=-64 [Aggregatibacter aphrophilus NJ8700] TACTGGTCCGAACACTT >NT05HA_0871(fabA) Score=5 Pos=-119 [Aggregatibacter aphrophilus NJ8700] AACTGATCGGACAAGTT # TF - IscR: NT05HA_1200 >NT05HA_0581(erpA) Score=4.9 Pos=-67 [Aggregatibacter aphrophilus NJ8700] ATTCTTGAATGCCTTAGAGGGTTAT >NT05HA_1766(nfuA) Score=5.3 Pos=-43 [Aggregatibacter aphrophilus NJ8700] ATGCCCGACAAAATCAATCAAGTTT >NT05HA_1200(iscR) Score=5.2 Pos=-68 [Aggregatibacter aphrophilus NJ8700] ATAGTTGACTAAACAAGTCAACAAT # TF - NagC: NT05HA_0409 >NT05HA_0617(ptsH) Score=5.6 Pos=-84 [Aggregatibacter aphrophilus NJ8700] TTATTTTAGTGTTTTAAATAA >NT05HA_1390(rpmE1) Score=5.8 Pos=-96 [Aggregatibacter aphrophilus NJ8700] TTATTTTTCTATTGAAAATAA >NT05HA_1390(rpmE1) Score=6.6 Pos=-33 [Aggregatibacter aphrophilus NJ8700] TTATTTTTCACTAAAAAATAA >NT05HA_0540(nagE) Score=5.6 Pos=-36 [Aggregatibacter aphrophilus NJ8700] TTATTTTATGGAATCAAAAAA >NT05HA_1414(znuA) Score=6.4 Pos=-103 [Aggregatibacter aphrophilus NJ8700] TTATTTTTCAAAATAAAAAAA >NT05HA_2308(omp) Score=6.5 Pos=-214 [Aggregatibacter aphrophilus NJ8700] TTATTTTTTATCATAAAATAA # TF - SiaR: NT05HA_0547 >NT05HA_0544(siaP) Score=5.3 Pos=-117 [Aggregatibacter aphrophilus NJ8700] TTTGAAATAAAACTTCATT >NT05HA_0544(siaP) Score=4.8 Pos=-156 [Aggregatibacter aphrophilus NJ8700] TTTGAAGTGATATTTCAAA >NT05HA_0545(nanE) Score=4.8 Pos=-117 [Aggregatibacter aphrophilus NJ8700] TTTGAAATATCACTTCAAA >NT05HA_0545(nanE) Score=5.3 Pos=-156 [Aggregatibacter aphrophilus NJ8700] AATGAAGTTTTATTTCAAA # TF - Fur: NT05HA_0360 >NT05HA_1294(fecB) Score=4.1 Pos=-74 [Aggregatibacter aphrophilus NJ8700] AAGAACTATTCTCAATATT >NT05HA_1575(exbB) Score=4.4 Pos=-89 [Aggregatibacter aphrophilus NJ8700] CAAAATGAGATTGATTATC >NT05HA_1575(exbB) Score=4.2 Pos=-83 [Aggregatibacter aphrophilus NJ8700] GAGATTGATTATCAGTTGT >NT05HA_1311(hasR) Score=4.3 Pos=-31 [Aggregatibacter aphrophilus NJ8700] TAAAATTATAATTATATTT >NT05HA_1365(cirA) Score=4.2 Pos=-95 [Aggregatibacter aphrophilus NJ8700] AAGCATAGTAATAATTATC >NT05HA_1365(cirA) Score=5.1 Pos=-89 [Aggregatibacter aphrophilus NJ8700] AGTAATAATTATCATTTGC >NT05HA_1269(hgpA) Score=5 Pos=-74 [Aggregatibacter aphrophilus NJ8700] GAAAATAAATTTCATTATC >NT05HA_1269(hgpA) Score=4.3 Pos=-50 [Aggregatibacter aphrophilus NJ8700] GCGAATTATTTTCATTTAT >NT05HA_0976(tyrS) Score=4.3 Pos=-192 [Aggregatibacter aphrophilus NJ8700] AAATTTGAGAACCATTATC >NT05HA_0976(tyrS) Score=5 Pos=-186 [Aggregatibacter aphrophilus NJ8700] GAGAACCATTATCATTTTC >NT05HA_0976(tyrS) Score=4.5 Pos=-224 [Aggregatibacter aphrophilus NJ8700] GAGAATAATTTTTATTAAA >NT05HA_1447(hpt) Score=4.5 Pos=-272 [Aggregatibacter aphrophilus NJ8700] TCAAATGATAATAATTCTT >NT05HA_1447(hpt) Score=4.6 Pos=-266 [Aggregatibacter aphrophilus NJ8700] GATAATAATTCTTATTGAC >NT05HA_2308(cjrC) Score=4.8 Pos=-56 [Aggregatibacter aphrophilus NJ8700] GATAATAAGAATAATTCTT >NT05HA_2308(cjrC) Score=4.2 Pos=-50 [Aggregatibacter aphrophilus NJ8700] AAGAATAATTCTTATTTAA >NT05HA_0572(ftr1) Score=4.7 Pos=-52 [Aggregatibacter aphrophilus NJ8700] GATAATTGTTATCAATTAC >NT05HA_0397(sitA) Score=4.3 Pos=-97 [Aggregatibacter aphrophilus NJ8700] TTATTTGATAATCATTTGC >NT05HA_0397(sitA) Score=4.3 Pos=-91 [Aggregatibacter aphrophilus NJ8700] GATAATCATTTGCATTTAA >NT05HA_0827(nrdA) Score=4.8 Pos=-48 [Aggregatibacter aphrophilus NJ8700] AGGATTTATTATCATTATC >NT05HA_0827(nrdA) Score=4.3 Pos=-42 [Aggregatibacter aphrophilus NJ8700] TATTATCATTATCGATAAC >NT05HA_1146(ceuA) Score=4.2 Pos=-40 [Aggregatibacter aphrophilus NJ8700] ATACATGAGAATTATTTTC >NT05HA_1146(ceuA) Score=4.3 Pos=-34 [Aggregatibacter aphrophilus NJ8700] GAGAATTATTTTCAATTAT # TF - TrpR: NT05HA_1280 >NT05HA_1280(trpR) Score=6.2 Pos=-31 [Aggregatibacter aphrophilus NJ8700] CGCACTAGTTTAATAGTATA >NT05HA_0824(COG4221) Score=5.3 Pos=-102 [Aggregatibacter aphrophilus NJ8700] TGTACTAGTGTAGTAGTATG >NT05HA_0807(trpE) Score=6.9 Pos=-51 [Aggregatibacter aphrophilus NJ8700] TGTACTAGTTTAATAGTGCA >NT05HA_1570(mtr) Score=6.2 Pos=-44 [Aggregatibacter aphrophilus NJ8700] TGTACTATTATAATAGTCCA # TF - FruR: NT05HA_0897 >NT05HA_1667(manX) Score=4.8 Pos=-50 [Aggregatibacter aphrophilus NJ8700] GCTGAAACGTTTCAAA # TF - PurR: NT05HA_0901 >NT05HA_0946(cvpA) Score=6.2 Pos=-79 [Aggregatibacter aphrophilus NJ8700] ACGCAAACGTTTTCGT >NT05HA_0780(purE) Score=5.5 Pos=-64 [Aggregatibacter aphrophilus NJ8700] TCGCAAACGATTGCGC >NT05HA_1329(purH) Score=6.2 Pos=-64 [Aggregatibacter aphrophilus NJ8700] AAGCAAACGTTTGCGT >NT05HA_1480(purL) Score=5.8 Pos=-81 [Aggregatibacter aphrophilus NJ8700] GCGCAAACGTTTTCGT >NT05HA_0418(purC) Score=6.1 Pos=-71 [Aggregatibacter aphrophilus NJ8700] ATGCAAACGTTTGCGT >NT05HA_1762 Score=5.9 Pos=-20 [Aggregatibacter aphrophilus NJ8700] TCGCAAACGATTGCGT >NT05HA_0456(yjcD) Score=5.6 Pos=-78 [Aggregatibacter aphrophilus NJ8700] GCGCAAACGTTTACTT >NT05HA_1689(folD) Score=5 Pos=-37 [Aggregatibacter aphrophilus NJ8700] TAGCAAACGTTTGTAT >NT05HA_2354(rpiA) Score=5.2 Pos=-57 [Aggregatibacter aphrophilus NJ8700] GCGCAAACGTTTACAT # TF - ModE: NT05HA_1099 >NT05HA_0380(ybgI) Score=6.4 Pos=-191 [Aggregatibacter aphrophilus NJ8700] ATCGTTATATATTAAATTGTATAATGAA >NT05HA_1098(modA) Score=6 Pos=-58 [Aggregatibacter aphrophilus NJ8700] TTCGTTGTATAATTTGTGCTATATATAA >NT05HA_0272(momA) Score=6.5 Pos=-68 [Aggregatibacter aphrophilus NJ8700] TTCATTATATTTATTTTTATATAACCAA >NT05HA_0848(moaA) Score=6.9 Pos=-252 [Aggregatibacter aphrophilus NJ8700] ATCGCTATATAAATTTATATATAATTGA # TF - LexA: NT05HA_1581 >NT05HA_0999(impA) Score=5.6 Pos=-37 [Aggregatibacter aphrophilus NJ8700] CACTGTACAAAAACACAGTT >NT05HA_0999(impA) Score=5.7 Pos=-63 [Aggregatibacter aphrophilus NJ8700] TACTGTATATAACAACAGTA >NT05HA_1941(recA) Score=6.1 Pos=-67 [Aggregatibacter aphrophilus NJ8700] TACTGTATATTAATACAGTT >NT05HA_1581(lexA) Score=4.9 Pos=-28 [Aggregatibacter aphrophilus NJ8700] TCATGTATATATTAACAGGA >NT05HA_1581(lexA) Score=5.2 Pos=-50 [Aggregatibacter aphrophilus NJ8700] TTCTGTATATAATACCAGTC >NT05HA_2208(uvrA) Score=5.4 Pos=-79 [Aggregatibacter aphrophilus NJ8700] AACTGGATATTTGCACAGTT >NT05HA_2209(ssb) Score=5.4 Pos=-110 [Aggregatibacter aphrophilus NJ8700] AACTGTGCAAATATCCAGTT >NT05HA_0196(mfd) Score=4.8 Pos=-86 [Aggregatibacter aphrophilus NJ8700] CACTGTTTTTTTATACAGAC >NT05HA_1086(uvrD) Score=5.3 Pos=-36 [Aggregatibacter aphrophilus NJ8700] GCCTGTACAAAAAAACAGTA >NT05HA_1353(ruvA) Score=5.6 Pos=-66 [Aggregatibacter aphrophilus NJ8700] AACTGGATATTTATCCAGTT >NT05HA_1273(recN) Score=6.1 Pos=-55 [Aggregatibacter aphrophilus NJ8700] TACTGTATATTAAAACAGTA # RNA - L10_leader >NT05HA_1815(rplJ) Score=20.9 Pos=-173 [Aggregatibacter aphrophilus NJ8700] TGACCTCATTCAAGCCCCGTCCAAGACCGTAGGGGAGCAATCTTAATTATCCTACGTAGATGGTGAACAGAATAAGAATTTTCTTGCTTCTGTGCACCGAGTTCGTCCTAATAGCAGTTTTATTAGGTATCT # RNA - Leu_leader >NT05HA_1565(leuB) Score=18.9 Pos=-98 [Aggregatibacter aphrophilus NJ8700] CTTCGTAGGGACAGGCTTTATGCCTGTCCAATATTAACGAGTAATCGGACAGGCATAAAGCCTGTCCCTACTAAATAACAAATAAAGGATAATTCAATAT >NT05HA_1564(leuA) Score=15.7 Pos=-201 [Aggregatibacter aphrophilus NJ8700] AGGATTTTTTTATGTTTCACTCTGTTTCTTTATCCCTCAACCTGCTGCTCTTACATTCTTTGTGCGACTAAGTTGTGGATGAAAAACAGTCAAATGTAAAACCCTCAAGATTTAAACCCGCACTCTAATTTGCGGGTTTTTTCGT # RNA - His_leader >NT05HA_1777(hisG) Score=61.1 Pos=-173 [Aggregatibacter aphrophilus NJ8700] ACCATCATCACCGTTTACCTGAATAATCTTTCGGGCATTCGGCGTGTTCGGGAGATAACTTCCGAGTACGAGTGAAATGCAGACATAATCAATCACCGTTTAAACAACCCCTCGGAAGGCAACTTTCGAGGGGTTTTGCTT >NT05HA_1368(yuiF) Score=61.1 Pos=-230 [Aggregatibacter aphrophilus NJ8700] CATCACCACCATGTAACTGAATGATCTTTCAGGTATTTGGTGTGCTTGGAAGATAACTTCCGAGCAGGTACGAATAAATCATTGCATATCGCCCCCTCGGAAGTCCGCTTTCGAGGGGGTTTCTTTTT # RNA - Lysine >NT05HA_0885(lysW) Score=136.8 Pos=-272 [Aggregatibacter aphrophilus NJ8700] ACGTATGTAGAGGTGCAAATGTTATAAGTATATTTTCCGAGTGGATAACGGTGAAGAAAATGGAAAGGAACATTTGCCGAAATCGATTAAAAGTCATTTTAATCGGTTGGTGGCGTCTTCGAAAGAACCGTCACTGTCATAGTATATTTACAACTATGGAGCGCTACTGGTTAGGT # RNA - PreQ1 >NT05HA_0382(queD) Score=40.3 Pos=-149 [Aggregatibacter aphrophilus NJ8700] TCAATTTGTAGTTCGCAAACCTCCTACATAAAAAAACTAGGTATCA >NT05HA_0238(queC) Score=48.8 Pos=-47 [Aggregatibacter aphrophilus NJ8700] CATCTGTGGTTCGCAACCCTCCCACATAAAAAAACTAAGGATACAT # RNA - FMN >NT05HA_1865(ribB) Score=112.1 Pos=-266 [Aggregatibacter aphrophilus NJ8700] CGCGCATTCTCAGGGCAGGGTGAAAGTCCCTACCGGTGGTGAGCGTGTTAACGTAAGCCCACGAGCGTTTGAGACAAAAGTGCGGGTGATTTTTCCCGTGTTTTTCTCAAAGTCAGCAGATTTGGTGTGAATCCAAAGCCGACAGTGATAGTCTGGATGAAAGAGAATAAAA # RNA - S15 >NT05HA_2369(rpsO) Score=94.7 Pos=-63 [Aggregatibacter aphrophilus NJ8700] GTCGTCGCTGAATTAGAGATCGGCTAACGATGTATCATTAACCACTTCATATTAGGAGTTATTATGTCTCTAAGTACTGAACAAAAAGCAAAAATTGTTGCTGAATATGGTCGTGATGGTAA # RNA - MOCO_RNA_motif >NT05HA_0848(moaA) Score=73.1 Pos=-136 [Aggregatibacter aphrophilus NJ8700] TTAATCGCATAAACTCCGAGCTTACTTAACCTACGTTTTGTAAAAATATGGTGGTAATGCCAATAGTACGCAGTTTGTATTATTCAGGGATACGTTGGAAACGGCTTATCCTCTCCGTTGTTTAGAAAGGTGTCAAATGCAACCCATT # RNA - Glycine >NT05HA_1471(glyP) Score=59.5 Pos=-218 [Aggregatibacter aphrophilus NJ8700] GACGAACCCTTGGAGAGATCCGTGTGCAACATTTAGCACTCACGGACGCCGAAGGCGCAAAGAAGCCATAAAAAAGGCTTTTCAAACGCTCAGGCAAAAGGACAGGGGCAGGAGATT >NT05HA_1471(glyP) Score=36 Pos=-299 [Aggregatibacter aphrophilus NJ8700] TGAAGGTAGCTGGAGAGCGGGGAATTGACCCCACGCCGACGAGGTAAAATCTTTCAGGCGCGATGGCAGGGACTGTTACTG # RNA - TPP >NT05HA_1780(thiE) Score=57.2 Pos=-167 [Aggregatibacter aphrophilus NJ8700] TTCGCTTGTCGGAGTGCCGGAAGGCTGAGATCGCAACATTGCGGGATCCGTGAACCTGTTGGGGTAATCCCTGCGTAGGAAACAAGTTTTCCTTTTCTTA >NT05HA_0532(thiD) Score=58.5 Pos=-210 [Aggregatibacter aphrophilus NJ8700] GTTATTAGTCGGGGTGCTTCGTGCTGAGATAATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAATCGGAGAATCAAAT >NT05HA_1226(afuA) Score=56.5 Pos=-188 [Aggregatibacter aphrophilus NJ8700] CCCGTTAGTCGGGGTGCTCCGTTATTCAAATAGCGGAGCTGAGAAATACCCGTGAACCTGATACAGTTAGCACTGACGTAGGAAACTAATGCACTTCACTCTG # TF - NarP: NT05HA_1602 >NT05HA_0812(hybO) Score=4.6 Pos=-190 [Aggregatibacter aphrophilus NJ8700] TACCTATTTCTAATTA >NT05HA_1299(frdA) Score=5 Pos=-153 [Aggregatibacter aphrophilus NJ8700] TAACTTTTTTGAGGTA >NT05HA_1781(eno) Score=4.1 Pos=-35 [Aggregatibacter aphrophilus NJ8700] TAACCCGTTTTGATTA >NT05HA_1606(pckA) Score=4.1 Pos=-70 [Aggregatibacter aphrophilus NJ8700] TAACAGTTTTTAGGTA >NT05HA_1606(pckA) Score=4 Pos=-20 [Aggregatibacter aphrophilus NJ8700] TAACACTAAAGAGGTG >NT05HA_1350(cydA) Score=4.6 Pos=-258 [Aggregatibacter aphrophilus NJ8700] TACTTATTTGGGGTTA >NT05HA_0112(focA) Score=4.1 Pos=-202 [Aggregatibacter aphrophilus NJ8700] TACTCCTATCTAATTA >NT05HA_0026(ccmA) Score=4.1 Pos=-101 [Aggregatibacter aphrophilus NJ8700] TACTGCTAAAGAGTTA >NT05HA_0856(torY) Score=4.4 Pos=-68 [Aggregatibacter aphrophilus NJ8700] TAACCAATTATGGTTA >NT05HA_1312(adhE) Score=3.7 Pos=-49 [Aggregatibacter aphrophilus NJ8700] TAATTCTAACCAGTTA >NT05HA_2016(napD) Score=4.2 Pos=-155 [Aggregatibacter aphrophilus NJ8700] TACCCTGTTATAGTGA >NT05HA_1109(mdh) Score=4.6 Pos=-31 [Aggregatibacter aphrophilus NJ8700] TACCCATTTTTAATTA >NT05HA_1388(arcA) Score=3.7 Pos=-117 [Aggregatibacter aphrophilus NJ8700] TACCTATAATGTTGTA >NT05HA_0037(nrfA) Score=4.1 Pos=-250 [Aggregatibacter aphrophilus NJ8700] TACCTAAAAATTGTTA >NT05HA_0037(nrfA) Score=4.3 Pos=-190 [Aggregatibacter aphrophilus NJ8700] TACTTATAAATGGGTA >NT05HA_1617(nqrA) Score=4.6 Pos=-371 [Aggregatibacter aphrophilus NJ8700] TACCTCTTTGTGATTA # TF - NimR: NT05HA_2207 >NT05HA_1176(nikK) Score=6 Pos=-61 [Aggregatibacter aphrophilus NJ8700] ACTCTAAAGTCGCTTCAGATT # TF - GntR: NT05HA_1090 >NT05HA_1087(gntU) Score=5.9 Pos=-171 [Aggregatibacter aphrophilus NJ8700] AAATGTTATCGGTAACAATC >NT05HA_1087(gntU) Score=6.2 Pos=-40 [Aggregatibacter aphrophilus NJ8700] GTATGTTACCAGTAACATTT >NT05HA_1088(gntK) Score=6.2 Pos=-195 [Aggregatibacter aphrophilus NJ8700] AAATGTTACTGGTAACATAC >NT05HA_1088(gntK) Score=5.9 Pos=-64 [Aggregatibacter aphrophilus NJ8700] GATTGTTACCGATAACATTT # TF - CueR: NT05HA_0167 >NT05HA_0168(copA0) Score=5.2 Pos=-82 [Aggregatibacter aphrophilus NJ8700] ACCTTAACCTAACGTTAAGGT >NT05HA_0167(cueR) Score=5.2 Pos=-33 [Aggregatibacter aphrophilus NJ8700] ACCTTAACGTTAGGTTAAGGT # TF - GalR: NT05HA_1260 >NT05HA_1259(galT) Score=6.3 Pos=-49 [Aggregatibacter aphrophilus NJ8700] TTTTGTAATCGTTTTCATAA >NT05HA_1260(galR) Score=5.7 Pos=-224 [Aggregatibacter aphrophilus NJ8700] TTATGAAAACGATTACAAAA >NT05HA_1260(galR) Score=5.2 Pos=-76 [Aggregatibacter aphrophilus NJ8700] AAAAGTAAGCGTTTTCAAAT >NT05HA_1261(mglB) Score=6.2 Pos=-187 [Aggregatibacter aphrophilus NJ8700] AGATGTAATCGTTTTCATAA # TF - MetJ: NT05HA_1785 >NT05HA_1785(metJ) Score=5.7 Pos=-85 [Aggregatibacter aphrophilus NJ8700] AGCAGTCTTCACGGCT >NT05HA_1785(metJ) Score=6.8 Pos=-93 [Aggregatibacter aphrophilus NJ8700] AGAAATCTAGCAGTCT >NT05HA_0341(metE) Score=7.9 Pos=-46 [Aggregatibacter aphrophilus NJ8700] AGACGTTTAGCCGTCT >NT05HA_0899(metX) Score=7.9 Pos=-163 [Aggregatibacter aphrophilus NJ8700] AGATGTTTAGACGTCT >NT05HA_2130(metN) Score=6.8 Pos=-65 [Aggregatibacter aphrophilus NJ8700] GGCATTCTAGACGTCT # TF - MetR: NT05HA_0342 >NT05HA_0341(metE) Score=5.2 Pos=-122 [Aggregatibacter aphrophilus NJ8700] ATTAAAATTATTCAT >NT05HA_0342(metR) Score=5.2 Pos=-157 [Aggregatibacter aphrophilus NJ8700] ATGAATAATTTTAAT >NT05HA_1325(glyA) Score=4.9 Pos=-114 [Aggregatibacter aphrophilus NJ8700] GTGAAAATTTTTCAT >NT05HA_0300(metF) Score=5 Pos=-106 [Aggregatibacter aphrophilus NJ8700] ATTAATCTTATTCAT