# TF - NagR: LGG_01861
>LGG_01862(nagA) Score=4.5 Pos=-66 [Lactobacillus rhamnosus GG]
AGTCTGGTCTATACCGGTTA
>LGG_02913(nagB) Score=5.1 Pos=-78 [Lactobacillus rhamnosus GG]
AATTAGGTATAGACCATTGT
>LGG_02913(nagB) Score=5.3 Pos=-35 [Lactobacillus rhamnosus GG]
ATATTGGACTAGACCAGATA
>LGG_00983(glmS) Score=4.8 Pos=-47 [Lactobacillus rhamnosus GG]
AAACCTGTCTAAACCAATTT
# TF - Lp_3221: LGG_02106
>LGG_02105(agl4) Score=6.5 Pos=-39 [Lactobacillus rhamnosus GG]
ATATGGAATCGATACCACAT
>LGG_02106(lp_3221) Score=6.3 Pos=-38 [Lactobacillus rhamnosus GG]
GTATGAAATCGATTCCATAA
# TF - PurR: LGG_02564
>LGG_00249(guaB) Score=5.3 Pos=-194 [Lactobacillus rhamnosus GG]
AAAGACGAACATT
>LGG_02564(purR) Score=4.8 Pos=-126 [Lactobacillus rhamnosus GG]
AAATGCGAACGTT
>LGG_00168(pbuO) Score=5.6 Pos=-105 [Lactobacillus rhamnosus GG]
AAACACGAACATT
>LGG_00874(guaC) Score=5.6 Pos=-134 [Lactobacillus rhamnosus GG]
AAACACGAACATT
>LGG_01814(purE) Score=5.5 Pos=-108 [Lactobacillus rhamnosus GG]
AAATACGAACATT
>LGG_01814(purE) Score=4.3 Pos=-96 [Lactobacillus rhamnosus GG]
TAAAACGAATAAT
# TF - CcpA: LGG_00793
>LGG_02733(ulaG) Score=4.7 Pos=-68 [Lactobacillus rhamnosus GG]
TTGTAAGCGCAATCAA
>LGG_02685(fucI) Score=4.7 Pos=-87 [Lactobacillus rhamnosus GG]
ATGAAAGCGCTTATTA
>LGG_02722(sorD) Score=4.4 Pos=-47 [Lactobacillus rhamnosus GG]
AAGAAAACGCTACCAT
>LGG_00372(rbsR) Score=4.5 Pos=-89 [Lactobacillus rhamnosus GG]
TTGACAGCGCTTCCAT
>LGG_00606(ldh) Score=4.5 Pos=-94 [Lactobacillus rhamnosus GG]
ATGAAATCGGATACAT
>LGG_00793(ccpA) Score=4 Pos=-95 [Lactobacillus rhamnosus GG]
AGTAAAACGCTTGCAT
>LGG_00644(glpK) Score=5.1 Pos=-51 [Lactobacillus rhamnosus GG]
TAGAAAACGTTTTCAT
>LGG_02823(pts20B) Score=4.2 Pos=-91 [Lactobacillus rhamnosus GG]
CTGAAAGCGCTTGTAA
>LGG_02577(lacX) Score=4.7 Pos=-36 [Lactobacillus rhamnosus GG]
ATGAATGCGTTTTCTT
>LGG_00653(galK) Score=4.7 Pos=-64 [Lactobacillus rhamnosus GG]
ATAAAAACGGTTACAA
>LGG_02032(fbp) Score=4.8 Pos=-82 [Lactobacillus rhamnosus GG]
TTGAAACCGTATACAA
>LGG_01221(pnuC) Score=4.1 Pos=-158 [Lactobacillus rhamnosus GG]
ATGAAAAGGGTTTCCA
>LGG_02912(mtlA) Score=4.5 Pos=-65 [Lactobacillus rhamnosus GG]
TTGTCAGCGATTACAT
>LGG_02691(rhaY) Score=4.8 Pos=-64 [Lactobacillus rhamnosus GG]
ATGTAAGCGGTTAAAT
>LGG_02762(LBA0143) Score=4.8 Pos=-77 [Lactobacillus rhamnosus GG]
ATGAATGCGGTTACAA
>LGG_01876(pck) Score=4.4 Pos=-85 [Lactobacillus rhamnosus GG]
GTGAAAGCCTTTTCAA
>LGG_02307(cad) Score=4.5 Pos=-115 [Lactobacillus rhamnosus GG]
GAGAAAGCGCTTATAA
>LGG_02679(lhv_0924) Score=4.7 Pos=-170 [Lactobacillus rhamnosus GG]
TTAAATGCGCTTTCAT
>LGG_02071(lulA) Score=4.4 Pos=-79 [Lactobacillus rhamnosus GG]
TTGAAACCGTTTTCGG
>LGG_00277(gntP) Score=4.7 Pos=-194 [Lactobacillus rhamnosus GG]
TTGTAAGCGGTTTCTG
>LGG_02523(ldh) Score=4.4 Pos=-193 [Lactobacillus rhamnosus GG]
TTGCAAGCGTTTACGT
>LGG_00704(yxjF) Score=4.7 Pos=-106 [Lactobacillus rhamnosus GG]
TTGAAAGCGCTATCGT
>LGG_01479(lplA1) Score=4.1 Pos=-150 [Lactobacillus rhamnosus GG]
TCGAAATCGCTTTCTT
>LGG_01320(pdhA) Score=4.2 Pos=-111 [Lactobacillus rhamnosus GG]
AATAAAACGCTTGCAA
>LGG_00601(treR) Score=4.3 Pos=-27 [Lactobacillus rhamnosus GG]
GTGAAAACGGTTACTG
>LGG_02027(glgB) Score=4 Pos=-197 [Lactobacillus rhamnosus GG]
CCGAAAGCGGTTACAA
>LGG_00921(pgm) Score=3.9 Pos=-100 [Lactobacillus rhamnosus GG]
TTGAGCGCGTTTTCAA
>LGG_01836(spxB) Score=4.6 Pos=-136 [Lactobacillus rhamnosus GG]
ATTAAAGCGCTTTCCT
>LGG_01836(spxB) Score=4.1 Pos=-89 [Lactobacillus rhamnosus GG]
GTGAAAGGGTTTGCAT
>LGG_02680(fucR) Score=4.5 Pos=-58 [Lactobacillus rhamnosus GG]
TTGCAAGCGCTTACGA
# TF - YhcF: LGG_01937
>LGG_01937(yhcF) Score=6.6 Pos=-40 [Lactobacillus rhamnosus GG]
AGTGTAATAGATAGCTAATACACT
# RNA - L10_leader
>LGG_02277(rplJ) Score=73.7 Pos=-154 [Lactobacillus rhamnosus GG]
GTTGTGATTAGTCACTCTGCCTAAGACTCAGGGGGCGCAAGCCTTAATCATCCTGCCGAGGTGGTATCGGAAACAGTAGATACCTCTATGTCTTGGTAGACATGGAGTTTTTTTATTGCTAAA
# RNA - TPP
>LGG_01815(thiT) Score=57.5 Pos=-140 [Lactobacillus rhamnosus GG]
AACCTTCACAAAGGGGAGCCATTGGCTGAGAGCGGGGAGACCCGGACCCTTCGAACCTGTTCGTTAGTGCGAGCGTAGGGATTTGTGAATGTCGGAAAC
>LGG_00363(ykoE) Score=71 Pos=-289 [Lactobacillus rhamnosus GG]
AGAAACATTTGGGGTGCTGAAAAGCTGAGATAATACCCATGGAACCTGATGCAGTTAGTACTGCCGCAGGGAAATGTCGCTAAGATCAATC
# RNA - FMN
>LGG_01383(ribU) Score=110.9 Pos=-219 [Lactobacillus rhamnosus GG]
TTCGTCTTCAGGGCAGGGTGTAATTCCCGACCGGCGGTATAAAGTCCGCGACCCGCTTTTTGCGGTGGAACCGGTGTGATTCCGGTACCGATAGTGATAGTCTAGATGGAAGAAGATGGGGCT
# RNA - PyrR
>LGG_02546(pyrG) Score=23.3 Pos=-118 [Lactobacillus rhamnosus GG]
TAATATACATTTTGGGCGCTTTACAGAAGTGTAAAGCCAATACGGTTCAAGCTCCCTGTTCGTATGAACAGGGAGCTTGTTTTT
>LGG_01461(pyrR) Score=60.2 Pos=-466 [Lactobacillus rhamnosus GG]
AAGCACCTTTAACTAAGTCCAGTGAGGCTTAGAAGGTTTCCTTTCCGTTGCGGCGGATTATTCAGGCTACGGTCGCCTTCTATCCAAATTGGGTAGGAGGCGTTTTTTG
# RNA - L13_leader
>LGG_02448(rplM) Score=59.6 Pos=-77 [Lactobacillus rhamnosus GG]
TGGTATTGTTTGCCCCACGATAAGCCCCGGAAACTTAACGTGTTCAAACAAGCACAGA
# RNA - L19_leader
>LGG_01639(rplS) Score=29.1 Pos=-54 [Lactobacillus rhamnosus GG]
AACGGCATTCCGCTGGTCGGGATGATTATGAATGTCGG
# RNA - L20_leader
>LGG_01747(infC) Score=52.2 Pos=-192 [Lactobacillus rhamnosus GG]
TGAGAAAAAGCAGAAGTTCCCGCTTCTCGCCCAAGTCTTTAGACCTCTAGGCTCATTAGTTCGGTATTTAATGAACAGCGGGGCCTTTGTGGCTACGCTGTTTTTGTTTTTT
# RNA - L21_leader
>LGG_01690(rplU) Score=42.6 Pos=-100 [Lactobacillus rhamnosus GG]
CCCTCCTATGCAACCGCACATCGTTAGGTTTTAAGCGCAAGCACCTAACTTGGCGAGTCTTCAGGGGAAA
# RNA - Lysine
>LGG_00112(lysA) Score=107.5 Pos=-281 [Lactobacillus rhamnosus GG]
TTAAACAGATAGAGGTTGCAGCCAACATGACTAACCGAATCGAGCGAGATCCTTCGTGGTGACATTCGGTGAAAGGGGCGGTTGCCGAAATGGGTGATCCGGGATCGGTGAGCCTGTTGGGCCAGGATTGAATAAATCCTGTACTGTCGCTTAGGTATCTAAGCGGGGCGCTATCATTCAA
>LGG_02848(lysX) Score=62.8 Pos=-279 [Lactobacillus rhamnosus GG]
CAAGAAATAGAGGTTGCGGTGGGCAACGAAAACTGGGGAGTGCCGAGTCATGTTGAACCAGTCGTAAGTGCCGCCGCCGAAATGTTGGATCGTATTCGGACGATTCGCATTGGGCCATGGGCGCATAACCCATGGACTGTCGAAGCTGGTTGCTTCGGGGCGCTATGATTCTGGT
# TF - Rex: LGG_01260, LGG_02247
>LGG_00757(adhE) Score=5.2 Pos=-105 [Lactobacillus rhamnosus GG]
TCGTGAAAAAGTTCACTA
>LGG_00757(adhE) Score=4.7 Pos=-84 [Lactobacillus rhamnosus GG]
TTGTTTACAAAATCACAA
>LGG_00757(adhE) Score=5.4 Pos=-48 [Lactobacillus rhamnosus GG]
TTGTGAAATGGTTAACAA
>LGG_01260(rex2) Score=4.8 Pos=-39 [Lactobacillus rhamnosus GG]
ATGTGAAAATGGTAACAA
>LGG_00325(noxE) Score=5.3 Pos=-41 [Lactobacillus rhamnosus GG]
TTGTGAAATTTTTATCAA
# RNA - preQ1-II
>LGG_02057(queT) Score=44.6 Pos=-125 [Lactobacillus rhamnosus GG]
GAAAAGTAAACTGGAAACATTGTAAGAACTATTAACTGAATCGGAACCGCCCCGCGCGCTTCCACGACGATACTTATTTCCTTTGATCGTCGTTATTACTGGCAAAGCCACAAAGGAGAAACAATA
# RNA - ykoK
>LGG_01319(COG0474) Score=126.1 Pos=-376 [Lactobacillus rhamnosus GG]
GTGCTTTCCGTTAGGTGAGGCTCCTATACGAACAATGCTGCTGCTCAGAAACATCGAGAGATGCCAATTGAGTCAACTGCGTCTGCCCATTAAGGCTTACGCTAATGCAGCTGAAGCTCGCTTCTAGGCGTATAGTGCTAAAACTAAACGATTGGGATGCTTTTT
# RNA - yybP-ykoY
>LGG_01855(atcL) Score=56.1 Pos=-162 [Lactobacillus rhamnosus GG]
TTTACTCAACATAGGGGAGTAACTAGCAGAGCATATCTGCGACAACGTCACCAACAAGGCTATGTCTGGTGTTGTCTTAAATAGTGAGACTTATGGATCTACT
# RNA - T-box(Ala)
>LGG_00766 Score=36.9 Pos=-138 [Lactobacillus rhamnosus GG]
GAAAAGCTATAATTGGGACTCGTTAGGATATGTGTCGACCCCTGAGTGAGACAGAAACAGCCGCATACGTTGAGAGCGGCTGCACCGGGCTAAGATATGCTCCCTAATATCAGGTGAACGAATATTAATGAAGTGGTAATGACTCGCATCATTGCAACCAAGGTGGTACCGCGTGCAAGCGCCCTTGGCAG
# RNA - T-box(Asp)
>LGG_01562(hisS) Score=47.1 Pos=-438 [Lactobacillus rhamnosus GG]
ACTAAGACCTGTGACGGAGTAGGATAGATCAATTTTAAGCGACCCGGAGATGGTGAAAGCCGGGACCGATCGAAAAGACACTCCTGAGGTGATCAAGTTCCGGAACGCCACCGTTATGGCAAAGTAAAACACAAGGTGGTACCGTGTCCGCACCCTTCGA
# RNA - T-box(Arg)
>LGG_01786(argS) Score=47.5 Pos=-216 [Lactobacillus rhamnosus GG]
TATAGATCCGGTGAGAAAGAGGAATTCAGGTTATTTGACGTTTAAAAGTGAGATCGGCTAGTGCAAACGATCACGTCTAACCTGTTGGCGCGCTTTTGAGGATCAGTGTTTTGAGTGGACTCATGTCAAGCAGAGTGGTACCGCGGGTGCAGGCTCGTCTCTTCG
# TF - MntR: LGG_00759
>LGG_02411(mntH) Score=6.4 Pos=-72 [Lactobacillus rhamnosus GG]
AAGTTAGGGAGACCTAAAAG
>LGG_02421(mntC) Score=5.6 Pos=-31 [Lactobacillus rhamnosus GG]
GAATTAGGTCACCCTAAAAT
# RNA - T-box(Gly)
>LGG_01514(glyQ) Score=53.7 Pos=-255 [Lactobacillus rhamnosus GG]
TGAATCGGTGATGAGAAAAAGGGTCGCATTTGTACCAAACCCAAGCGAGTCAGGGATAGTGTAAGCCTGATGGTGGTGAATGTGATTGGCGTTTTCGAACCAAATGACAAAGCTGCAGGTAGATTCGGTCTATCTGAAGTAGGGTGGAACCGCGCAGAAGCGTCCCTACG
# RNA - T-box(His)
>LGG_01445(hisZ) Score=99.6 Pos=-375 [Lactobacillus rhamnosus GG]
CCATGAAGTTGTGATTAGACCAAGTAGGTTGGCACCAATCCACAGAGAGCGCCGATTGCTGAGAACGCGTGATTGACCGACTGAACACACATCTAAGAACTTGATAGCCGAACCGAGTAAGCTATCACGCACCTGTTGCGTTATCACCGCTGCCAATAACAGTTCGCGCAAGCCGACATGGGATTGGTAGATGAGGTTTGGGTCGTAAGGTCCAGACAAATTGAGGTGGTACCGCGAAGTTGATTCGCCCTCGAA
# RNA - T-box(Ile)
>LGG_01291(ileS) Score=87.8 Pos=-248 [Lactobacillus rhamnosus GG]
CAATAACGTATGAACACGCGTCATTTGCCGGTCCCCTTTGCAGCGAGTCAGGAATAGGTGTGAGCCTGATAAGTACCGCTGAATGATATCAGTTCGCAGTTGTCTCGCCGAATAACTAAGCGAGACCGGTTGATCACCGTTAAGCAATCACTGAGGGGGACTTGTTCCCTGAAGTTAGGTGGTACCACGTTTGCTCGTCCTAATATA
>LGG_00575(brnQ) Score=87.9 Pos=-414 [Lactobacillus rhamnosus GG]
TACAAATGCAACGCGAAAGACAAGTAGTTGTGTTCATGGATTCAGCGAGCTTCGGTTGGTGTGAGGAAGCATTCAGGGCATAGCGAATATCCCTTTCAAGCAGGACACCGAACCTTCAGTAACGTGTCATGGGGGCACCCATTACAGTGCTAGCATATCGTCATTTGACCGTATGCGATGAAGACTAGGCCATTTTTGGCTATGGTGAATTAAGGTGGTACCGCGCAAAGTCGCCCTTAGC
# RNA - T-box(Leu)
>LGG_00848(leuS) Score=92.3 Pos=-239 [Lactobacillus rhamnosus GG]
AACGAACAAAGGAGTAGTAAGTCGGCGCGGGTTTCAGAGAGCAGGCGGTGGTGCGAGCCTGACGATGCTAAGACTGAACTGACCTTTGAAGTTGCTGCGGTGAACGGAGTAATCGCAGCCGGCCGGACCGTTACCCCTTTTGAGCGCTGTGAAAGCAGAACTTAGGTGGTACCGCGGCTGAGCCGTCCTAATGAA
# RNA - T-box(Met)
>LGG_00500(metQ) Score=62.5 Pos=-313 [Lactobacillus rhamnosus GG]
TCAACACTTCGAGAAGAAGATTAGCCTTAGCGCAAGCGTTGCAGAGAACCCGGATGGTGAAAAAGGGGCGTTGGCAAAAAGGTGAAGATGAGCTTCGAATAGTGATTCGTGCGGTTAACGCCTGCGGATCGGTTGCAGCCGTTATCCTGCCAGGTATCAACAGGTACTGGAGGCGATGTTTCGGCATTGCAAACGAGGGTGGTAACACGGCATGGCCGTCCCTTGACG
>LGG_00597(metE) Score=81.1 Pos=-457 [Lactobacillus rhamnosus GG]
TTGAAATGCGGAAAGATGAGTAGCTGTTCATTTTTTGTTTAGAGAGTGTCCATTTTGGTGAAAGGACATCTAAAAATGCCAGCGAATATGGTCTTGGTGATGCAGGTGTGCCGAGCAATGGCAAAGCACACATGGGGACGCCCATTATTGCGTTAGGTCTCACAGTGAATACTGTCGGACTGATTGAGGAAAGTTGTGTGAGCAGCTTTCAAACCAAGGTGGTACCACGGTAAGCCGTCCTTGGC
>LGG_01196(metQ) Score=82 Pos=-313 [Lactobacillus rhamnosus GG]
GAAACGAATGATATGAGTGAGTAGATTTGATGAGACTGTACAGAAAACCTGGTTGGCTGAGAGCAGGGTAGTTGATTGAATTGAAGATGGCTCATTGATCGGCATCGCTGAGCATTGGTTAAGCGATGATGGCTGGCGGTCATTATTCCGCACACAGGTTATTGCCTGTTACTGAGGGCGCTTTGGCGTCGAATTAGAATGGTACCGCGAGTTAACTCGCTTCTAAAAC
>LGG_01195(metQ) Score=73.3 Pos=-342 [Lactobacillus rhamnosus GG]
AACGGACTGAGTGAGTAGTGATCGCAAGACAGTACAGAAAACCTGTAGTGATGAGAGCAGGGTTGTGAGTGATCATGAACATGGCTTAGTGCACACGGCACACCGAGCATTTTTGCAAGGCTGTGATGGTTGGCGCCCATTATCGTGCTCCCGGATGAATACGTCCGGTGAGTGGGTCGCGTTTTTCGTGGCCAATTAGAATGGTACCGTGGGCCAAAGCTCACTTCTAACAG
# RNA - T-box(Phe)
>LGG_01718(pheS) Score=60.4 Pos=-293 [Lactobacillus rhamnosus GG]
TGTAAAAACAATGACGAAAGCCCAAACAGGCTGGTAAATCAGGGAATGACGTTCACGAGACTGCAAGACGTCTGTTACCAAAATGTTTGTCTTCACTTTCTGAGTTGACTTTTGAGGTGGCAACACTTAGAAAGCTCCGGCCTGGCCGTTACCTTGTTGAGTGCATGAGGTTTTTTAATCATGAACAAGGGTGGTACCGCGATGCTTCGTCCCTTTT
# RNA - T-box(Pro)
>LGG_02366(proB) Score=38.6 Pos=-219 [Lactobacillus rhamnosus GG]
CACTTCATCAAGTCATAGTAGCGGCTCACAGAGATCAGGACGTTTGCTGAAAGTTCTGAATGGCTCGCGAATCCAAGCTTGAACTGAAGATTGACGAAATTAAATAGTAAAAAAGCGCAAAGCACGGCTTTGAACGAGAATGGTACCGCCTTAACGGGTGTCTCGA
# RNA - T-box(Ser)
>LGG_01893(serS) Score=73.9 Pos=-353 [Lactobacillus rhamnosus GG]
AGTAAACACGTCTGAAGCGCCTAATGGATGTTTTAGAGAGTTAGCGGGTGGTGCAAGCTGACATATCATCCTCATTCCAGCGCCTTAGTGGGCAGTGATGAACTGCACGGTGACAACCGTTATCAGCCTCAAGAGGGTGGCGTTATGCGCCAAACTTGGGTGGTACCGCGGAAAAAGCCTTTCGTCCCATTA
# RNA - T-box(Thr)
>LGG_01754(thrS) Score=55.6 Pos=-320 [Lactobacillus rhamnosus GG]
GTAACTATCGAAGACGGAAGCAATAAAGGATCATCTACTAGAGAGTAAGGCCGTGGCTGAAAGCCTTGCAAGATCTGATCCGAACCACTTCTCGAGATTGCCCTAATGGCCCTGTTGCGCAGGTTACGCGCCAATGAAGTGGCCCGCAGCAAGACTGTCGGCAACCTGGGTGGAACCGCGATCACAAATCGTCCCTGAT
# RNA - T-box(Trp)
>LGG_02609(trpS) Score=73.6 Pos=-226 [Lactobacillus rhamnosus GG]
TATTCATACAAACGATGAGTACCCTATCCAAATGGTCGCCAGAGAGTCGGCAGCGCTGAGAAGTCGATGGCCAGGGTAGGTGAAATTGGGTCGTTTGCGTTACGTTCGGTGGGTGCGCCTTAAGCCAAGAGCGGTCCGAAATTCGGACAAGTTAGGTGGTACCGCGCGCTTGCGTCCTATGT
# RNA - T-box(Tyr)
>LGG_02017(tyrS) Score=74.2 Pos=-294 [Lactobacillus rhamnosus GG]
TATAAAATTTACCAGCTGAGTCGCAGTAGTGTTATCTAGGTAGGCTTTCAGAAAAACGGTGGTTGCTGCAAACCGTTCCACCTGATAGCACGAATTACAGCTCAATGAATTCTGGCCGCGGGTCATGCCGATATCCATGAGAGTGATGCAAAGCATAATTTGGGTGGTACCGCGGTGAAAGTCGTCCCTGAT
# RNA - T-box(Val)
>LGG_01261(valS) Score=113.2 Pos=-332 [Lactobacillus rhamnosus GG]
CTAATGCAATGATCAAGAGGGTTGCGGTCTTTTTTTTCAGCGACGGGATGGTTGGTGTGAATCTCGAAAGAAGGGCGTGATTGTAGCTTGTGAGCTGCCGTCCTGAAGTGAGTAGGGAACGGCCGGTGACAGCCGTTATCCTGAACCAAGTGGGGATTGATTCCCAATTTAGGTGGTACCGCGAGTAGACTCGTCCTAATAAT
>LGG_00292(brnQ) Score=85.9 Pos=-339 [Lactobacillus rhamnosus GG]
TTCAAAAACGATGAGTAGAAGAGTACCTAGATTGTCAGTGTCAGCGAGTCTCGGTTGGTGGGAAGAGACCTCTGATTATCTAGTGGAAAGTAGTCTACGAGTTGCCATTGCGACTTCGGAAGTAATGGCTGGGATTGCGCCCATTACAGCAATCGCGTATCGCCGAATCAGGCCGTACGCGGCGAGACCGCTTTCGGTGACGTTGGCGGTAAAGTAAGGTGGTACAGCGTGATCCGCGCCCTTAAC
# TF - NiaR: LGG_00791
>LGG_02281(niaP) Score=5.6 Pos=-51 [Lactobacillus rhamnosus GG]
TTAGGGTGTCAAGACACCTAAT
# TF - GlnR: LGG_01697
>LGG_00633(nrgA) Score=5.4 Pos=-174 [Lactobacillus rhamnosus GG]
ATGTTATATAAGCTGACGT
>LGG_02862(glnP) Score=6.1 Pos=-256 [Lactobacillus rhamnosus GG]
ATGTAAGAAAAGCTAACAT
>LGG_02872(ansB) Score=5 Pos=-90 [Lactobacillus rhamnosus GG]
TTGTTAGACTAGCTCACAT
>LGG_01697(glnR) Score=6 Pos=-79 [Lactobacillus rhamnosus GG]
ATGTAAGAAAACCTTACAT
# TF - CopR: LGG_01802
>LGG_01802(copR) Score=6.2 Pos=-29 [Lactobacillus rhamnosus GG]
AAGATTACAAGTGTAAACGG
>LGG_01802(copR) Score=5 Pos=-59 [Lactobacillus rhamnosus GG]
TCGTTTACAGTTGTAAATTA
# TF - FabT: LGG_02121
>LGG_02122(fabA) Score=5.4 Pos=-141 [Lactobacillus rhamnosus GG]
GCTTTGAACATCCAATT
>LGG_02121(fabT) Score=5.9 Pos=-39 [Lactobacillus rhamnosus GG]
ACTTTGAGTATCAAATC
# TF - CggR: LGG_00932
>LGG_00932(cggR) Score=7.6 Pos=1 [Lactobacillus rhamnosus GG]
TGCATACTGAACTTGCGTGGCTCAAAGCGATCGCGCC
# TF - NrtR: LGG_02763
>LGG_02764(pncA) Score=6.5 Pos=-41 [Lactobacillus rhamnosus GG]
TTTAAGTAAATTTTACTTTAA
# TF - PerR: LGG_00831
>LGG_02803(cadA) Score=5 Pos=-80 [Lactobacillus rhamnosus GG]
TTATATTCGTTCTAA
>LGG_02803(cadA) Score=5.2 Pos=-46 [Lactobacillus rhamnosus GG]
TTGTAATGGTTATAA
>LGG_00491(npr) Score=5.5 Pos=-75 [Lactobacillus rhamnosus GG]
TTGTAATTATTCTAA
>LGG_02565(ybbL) Score=5 Pos=-35 [Lactobacillus rhamnosus GG]
TTAGAATGGTTACAA
>LGG_02415(cueO) Score=4.8 Pos=-72 [Lactobacillus rhamnosus GG]
TTAGATTAATTCCAA
# TF - TreR: LGG_00601
>LGG_00601(treR) Score=5.6 Pos=-61 [Lactobacillus rhamnosus GG]
ATACCTGTACGTACAAGTAG
# TF - RbsR: LGG_00372
>LGG_00372(rbsR) Score=6.7 Pos=-46 [Lactobacillus rhamnosus GG]
TAAGTAAAACGTTTTACCTA
# TF - ArgR: LGG_01785, LGG_01678
>LGG_01356(artPQ) Score=4.3 Pos=-56 [Lactobacillus rhamnosus GG]
ATTGCATAAAAATTGAAT
>LGG_02816(artP2) Score=4.4 Pos=-46 [Lactobacillus rhamnosus GG]
AATGAGTATATATTCAAT
# TF - FatR: LGG_00069
>LGG_00069(fatR) Score=6.4 Pos=-33 [Lactobacillus rhamnosus GG]
GAATGAACGTTCATTC
# TF - FucR: LGG_02680
>LGG_02685(fucI) Score=5.8 Pos=-154 [Lactobacillus rhamnosus GG]
CTGTGAAGAAAATTGACGA
# TF - GalR: LGG_00656
>LGG_00653(galK) Score=5.9 Pos=-78 [Lactobacillus rhamnosus GG]
TTAATTTTAGTAAAATAAA
# TF - HrcA: LGG_01606
>LGG_01823(clpL) Score=6.2 Pos=-128 [Lactobacillus rhamnosus GG]
TTAGCACTCTTGCGGTTAGAGTGCTTG
>LGG_01606(hrcA) Score=7.6 Pos=-42 [Lactobacillus rhamnosus GG]
TTAGCACTCGTGTAAAACGAGTGCTAA
>LGG_02804(hsp) Score=7.1 Pos=-97 [Lactobacillus rhamnosus GG]
TTAGCACTCTAACATGACGAGTGCTAA
>LGG_00931(clpP) Score=7 Pos=-54 [Lactobacillus rhamnosus GG]
TTAGCACTGTACTTTAAAGAGTGCTAA
>LGG_02240(groS) Score=6.6 Pos=-56 [Lactobacillus rhamnosus GG]
TTAGCACTTAGACACAACGAGTGCTAA
# TF - Zur: LGG_02012
>LGG_02422(rpsN2) Score=6.8 Pos=-243 [Lactobacillus rhamnosus GG]
TTAAGCGTAATGATTACGATTTA
>LGG_02423(znuA) Score=6.7 Pos=-181 [Lactobacillus rhamnosus GG]
TAAATCGTAATCATTACGCTTAA
>LGG_02423(znuA) Score=6.9 Pos=-40 [Lactobacillus rhamnosus GG]
TAAATCGTAATGATTACGTTTTG
>LGG_00285(znuC) Score=6.4 Pos=-39 [Lactobacillus rhamnosus GG]
TAAATCGTAATCGTTACCGTTTG
>LGG_02012(zur) Score=5.4 Pos=-70 [Lactobacillus rhamnosus GG]
CTAATCGTAACCAGTACGATTTG
# TF - NrdR: LGG_01758
>LGG_00138(nrdD) Score=5.5 Pos=-131 [Lactobacillus rhamnosus GG]
CCACTATATAGTGTAT
>LGG_01221(pnuN) Score=4.9 Pos=-107 [Lactobacillus rhamnosus GG]
CACCAATATATTGTAT
>LGG_01221(pnuN) Score=3.9 Pos=-139 [Lactobacillus rhamnosus GG]
TTAGTACATGTTGTGG
>LGG_01473(nrdH) Score=4.6 Pos=-85 [Lactobacillus rhamnosus GG]
CCCCAAGATATGGTGT
>LGG_01800(nrdG) Score=5 Pos=-145 [Lactobacillus rhamnosus GG]
ATACTACATCTTGTAG
>LGG_02296(nrdJ) Score=5.3 Pos=-31 [Lactobacillus rhamnosus GG]
ATACCATATCTTGTAT
# TF - CcpB: LGG_02273
>LGG_02272(ywbB) Score=5.8 Pos=-240 [Lactobacillus rhamnosus GG]
CTGTAACGCGTTACAC
# TF - LSEI_0368 : LGG_00419
>LGG_00419(LSEI_0368) Score=6.5 Pos=-82 [Lactobacillus rhamnosus GG]
TTGTGTAAACGTTTTCGCAC
>LGG_00419(LSEI_0368) Score=6.7 Pos=-180 [Lactobacillus rhamnosus GG]
TTGCGGTAACGTTTACGCAA
>LGG_00418(tal) Score=6.5 Pos=-141 [Lactobacillus rhamnosus GG]
GTGCGAAAACGTTTACACAA
>LGG_00418(tal) Score=6.7 Pos=-43 [Lactobacillus rhamnosus GG]
TTGCGTAAACGTTACCGCAA
# RNA - THF
>LGG_02255(folT) Score=73.2 Pos=-133 [Lactobacillus rhamnosus GG]
TCTAGGAGTAGGAACCTGTGCGTTAAGTGCTGCCGGAACGGAATGTGAACGGCAGACGAAGACAGATGTCGCGGTGCAGGTTCCGCATTCGCCTGA
# TF - IolR: LGG_00260
>LGG_00261(iolT) Score=8.5 Pos=-136 [Lactobacillus rhamnosus GG]
TGAACATCTAATGATTAAATTA
>LGG_00260(iolR) Score=-0.4 Pos=-83 [Lactobacillus rhamnosus GG]
AAACATGGTCATAATATGTCCA
# TF - GutR: LGG_02721
>LGG_02722(gutF) Score=7.3 Pos=-88 [Lactobacillus rhamnosus GG]
TTTTCA--------GGAAAA
# TF - CcpN: LGG_02352
>LGG_02351(ppdK) Score=4.7 Pos=-66 [Lactobacillus rhamnosus GG]
CTGCTAAATAATACATTATAT
# TF - MtlR: LGG_02911
>LGG_02912(mtlA) Score=7.2 Pos=-96 [Lactobacillus rhamnosus GG]
TTTGGCACAACTAACTGTGCCAAA
# TF - TagR: LGG_02649
>LGG_02649(tagR) Score=4.8 Pos=-50 [Lactobacillus rhamnosus GG]
GAAAATGCTTTTCA
>LGG_02648(tagK) Score=4.8 Pos=-112 [Lactobacillus rhamnosus GG]
TGAAAAGCATTTTC
# TF - FruR: LGG_01361
>LGG_01361(fruR) Score=5.6 Pos=-72 [Lactobacillus rhamnosus GG]
TGAATGTTTTTAACGGTTTT
# TF - CtsR: LGG_02500
>LGG_00931(clpP) Score=7 Pos=-88 [Lactobacillus rhamnosus GG]
AAATCTTTGACCTTATTTGACTTT
>LGG_01367(clpB) Score=6.2 Pos=-73 [Lactobacillus rhamnosus GG]
AATAGTTTGACCTTAACTGACCAA
>LGG_01823(clpE) Score=0.1 Pos=-69 [Lactobacillus rhamnosus GG]
TAGGTCAAGAAAGGTCAAACCTTT
>LGG_02500(ctsR) Score=-0 Pos=-39 [Lactobacillus rhamnosus GG]
ATAGTCAAGATTGGTCAAAGTCAA
# TF - AgaR2: LGG_00332
>LGG_00332(agaR2) Score=4.5 Pos=-30 [Lactobacillus rhamnosus GG]
ATGTGGTTGGTACCACGT
# TF - LexA: LGG_00717
>LGG_01358(uvrC) Score=4.9 Pos=-29 [Lactobacillus rhamnosus GG]
GCGAACATTTGTTTTA
>LGG_01676(LJ1544) Score=4.5 Pos=-53 [Lactobacillus rhamnosus GG]
TTGAACACATGTTCGT
>LGG_01676(LJ1544) Score=4.9 Pos=-26 [Lactobacillus rhamnosus GG]
ACAAACAAACGTTCGG
>LGG_01419(parE) Score=4.5 Pos=-179 [Lactobacillus rhamnosus GG]
ACGAACACACATTCGA
>LGG_01425(xerC) Score=5.1 Pos=-27 [Lactobacillus rhamnosus GG]
GAAAACATATGTTCGA
>LGG_01010(umuC) Score=5.2 Pos=-40 [Lactobacillus rhamnosus GG]
GCAAACATACGTTCGT
>LGG_00328(srmB) Score=4.3 Pos=-55 [Lactobacillus rhamnosus GG]
CAGAATGTATGTTCTA
>LGG_02643(recA) Score=4.4 Pos=-69 [Lactobacillus rhamnosus GG]
ACAAACGCGTGTTCGA
>LGG_00717(lexA) Score=4.7 Pos=-60 [Lactobacillus rhamnosus GG]
GCAAACGTCCGTTCGT
>LGG_00923(uvrB) Score=5 Pos=-271 [Lactobacillus rhamnosus GG]
GCGAAAGTATGTTCGC
# TF - LacR: LGG_00668
>LGG_00668(lacR) Score=9 Pos=-48 [Lactobacillus rhamnosus GG]
AAGAAACAA-ATCAAACAA
# TF - YtrA: LGG_02246
>LGG_02246(ytrA) Score=6.7 Pos=-46 [Lactobacillus rhamnosus GG]
GTGTACTGCGTATAATAGTACAC
# TF - GntR1: LGG_00273
>LGG_00273(gntR1) Score=5.8 Pos=-96 [Lactobacillus rhamnosus GG]
TATGTAAAATAATTACAAA
>LGG_00273(gntR1) Score=5.4 Pos=-63 [Lactobacillus rhamnosus GG]
TTCGTAAATAATTTTCAAT
>LGG_00274(gntZ) Score=5.4 Pos=-238 [Lactobacillus rhamnosus GG]
ATTGAAAATTATTTACGAA
>LGG_00274(gntZ) Score=5.8 Pos=-205 [Lactobacillus rhamnosus GG]
TTTGTAATTATTTTACATA
# TF - MleR: LGG_00725
>LGG_00726(mleS) Score=5.7 Pos=-118 [Lactobacillus rhamnosus GG]
TATAAAAATATTTTATC
>LGG_00725(mleR) Score=5.7 Pos=-322 [Lactobacillus rhamnosus GG]
GATAAAATATTTTTATA
# TF - CzcR2: LGG_02418
>LGG_02417(czcX) Score=6 Pos=-68 [Lactobacillus rhamnosus GG]
TTATGTTGACATTAACATAT
# TF - FlpA: LGG_00085
>LGG_00083(copZ) Score=6 Pos=-76 [Lactobacillus rhamnosus GG]
AACTTGACGGCCATCAAGGT
>LGG_00082(cadA) Score=5.3 Pos=-68 [Lactobacillus rhamnosus GG]
AAATTGATCCCGGTCAAGGT
# TF - YxeR: LGG_00488
>LGG_00488(yxeR) Score=4.2 Pos=-122 [Lactobacillus rhamnosus GG]
AAGTTGACACCGTGTCACTAT
>LGG_00488(yxeR) Score=3.4 Pos=-78 [Lactobacillus rhamnosus GG]
ACGGTGACACGGTGTCACCAT
# TF - LSEI_0081: LGG_00105
>LGG_00105(LSEI_0081) Score=5.4 Pos=-118 [Lactobacillus rhamnosus GG]
GACACATGTGTGAC
>LGG_00104(LSEI_0080) Score=5.4 Pos=-53 [Lactobacillus rhamnosus GG]
GTCACACATGTGTC
# RNA - SMK_box_riboswitch
>LGG_00842(metK) Score=63.1 Pos=-84 [Lactobacillus rhamnosus GG]
AGAGTTGCAATACATTCCCGATGGGGTTCGTTAGCGATTAACGAACATGCCTTGTAACCGAAAATCATGAGGGGGAAACAAACGATGCA