# TF - SphR: CYA_1033
>CYA_1552(pstS) Score=10.2 Pos=-203 [Synechococcus sp. JA-3-3Ab]
AATAACCT-(3)-TTTAACCT-(3)-GTTAACCA
>CYA_1732(pstS) Score=9.6 Pos=-75 [Synechococcus sp. JA-3-3Ab]
GTTAACCT-(3)-GATATCCT-(3)-GTTAACTT
>CYA_1541(cysR) Score=10.5 Pos=-172 [Synechococcus sp. JA-3-3Ab]
CTTAACCT-(3)-CATAACCT-(3)-CTTTACTT
>CYA_2506(phoD) Score=7.9 Pos=-129 [Synechococcus sp. JA-3-3Ab]
CTTAAACA-(3)-GCTAACCC-(3)-TTTCACCG
# TF - Fur: CYA_0030
>CYA_2647(psbD) Score=3 Pos=-106 [Synechococcus sp. JA-3-3Ab]
TTTATTAATTTTTCGTAAG
>CYA_2794(afuC) Score=3.8 Pos=-26 [Synechococcus sp. JA-3-3Ab]
AGTGAAAATCTTTTGCAAC
>CYA_0643(fdx) Score=2.8 Pos=-92 [Synechococcus sp. JA-3-3Ab]
ATTAAAAATATGATTTAAA
# TF - LexA
>CYA_0805(SYNPCC7002_A0856) Score=3.7 Pos=-39 [Synechococcus sp. JA-3-3Ab]
GCTACAGGAGTAGT
# TF - NtcA: CYA_1799
>CYA_0030(fur) Score=3.6 Pos=-66 [Synechococcus sp. JA-3-3Ab]
GCTATTATCAATTACA
>CYA_0570(SYNPCC7002_A2395) Score=3.9 Pos=-139 [Synechococcus sp. JA-3-3Ab]
GGTAAGATAAAATACA
>CYA_0570(SYNPCC7002_A2395) Score=4.2 Pos=-81 [Synechococcus sp. JA-3-3Ab]
CGTATCAAAGGCTACT
>CYA_1363(glnA) Score=4.3 Pos=-138 [Synechococcus sp. JA-3-3Ab]
CGTATCAGAAACTACA
>CYA_1508(glnB) Score=4.5 Pos=-74 [Synechococcus sp. JA-3-3Ab]
TGTATCCGTTTTTACA
>CYA_0612(nirA) Score=3.9 Pos=-72 [Synechococcus sp. JA-3-3Ab]
TGTAACTGCCAATACC
>CYA_1799(ntcA) Score=4.7 Pos=-181 [Synechococcus sp. JA-3-3Ab]
TGTAGCTCCTGCTACA
>CYA_0984(ntcB) Score=4.2 Pos=-89 [Synechococcus sp. JA-3-3Ab]
TGTAACGGTGTTTACA
>CYA_1920(urtE) Score=3.9 Pos=-248 [Synechococcus sp. JA-3-3Ab]
AGAAACAGAAGCTACA
>CYA_1924(urtA) Score=3.7 Pos=-272 [Synechococcus sp. JA-3-3Ab]
GGTATCCCGCGATACA
# TF - NtcB: CYA_0984
>CYA_0612(nirA) Score=4.4 Pos=-101 [Synechococcus sp. JA-3-3Ab]
ATGACAAAACTGCAT
>CYA_2428(psbL) Score=4.2 Pos=-26 [Synechococcus sp. JA-3-3Ab]
ATGCAGTTTATTCAA
# TF - Zur: CYA_1383
>CYA_2533(sufE) Score=5.7 Pos=-39 [Synechococcus sp. JA-3-3Ab]
TTATGATTGATTATCATTCTCAT
# TF - SufR: CYA_2189
>CYA_2190(sufB) Score=5.3 Pos=-67 [Synechococcus sp. JA-3-3Ab]
TTAAGCAACAACCGTGTTGTTTTA
>CYA_2189(sufR) Score=6 Pos=-119 [Synechococcus sp. JA-3-3Ab]
TAAAACAACACGGTTGTTGCTTAA
# TF - Crp: CYA_1331
>CYA_0077(murF) Score=3.8 Pos=-32 [Synechococcus sp. JA-3-3Ab]
ATTGACTAGAGTCATG
>CYA_0638(cupA) Score=4.3 Pos=-325 [Synechococcus sp. JA-3-3Ab]
TGTGATTTTGCTCAAC
>CYA_2225(apcC) Score=3.7 Pos=5 [Synechococcus sp. JA-3-3Ab]
CATGTTTAAGATCACG
# TF - CcmR: CYA_1081
>CYA_0894(cmpA) Score=4.2 Pos=-185 [Synechococcus sp. JA-3-3Ab]
ATAAACGGAAGTCTAT
>CYA_0640(ndhF3) Score=5 Pos=-107 [Synechococcus sp. JA-3-3Ab]
CTTGATTTTTGTCTAT
>CYA_0894(cmpA) Score=4.4 Pos=-153 [Synechococcus sp. JA-3-3Ab]
ATTGTATTGTTTCTAT
# TF - HrcA: CYA_2590
>CYA_0332(groEL2) Score=10.2 Pos=-131 [Synechococcus sp. JA-3-3Ab]
TTAGCACTC---------GAGTGCTAA
>CYA_1406(groES) Score=9.7 Pos=-108 [Synechococcus sp. JA-3-3Ab]
CTAGCACTC---------GAGTGCTAA
# TF - PedR: CYA_2351
>CYA_0520(ndhD) Score=4 Pos=-18 [Synechococcus sp. JA-3-3Ab]
GAGTATTTATTCCC
>CYA_0085(CYA_0085) Score=3.5 Pos=-109 [Synechococcus sp. JA-3-3Ab]
AACCATATTTTCTC
# RNA - TPP
>CYA_0011(thiC) Score=66.2 Pos=-107 [Synechococcus sp. JA-3-3Ab]
CACAACACGCTAGGAGTGTCTGGGGGCTGCCCCCAGGCTGAGATTACATCCTCAGAACCTGATCTGGGTCATACCAGCGTAGGAAAGCGAGTACCGGAGTTG
# RNA - Cobalamin
>CYA_1108(btuB) Score=46.7 Pos=-182 [Synechococcus sp. JA-3-3Ab]
GAGGAAAGCCGTGCCGTCAGGTTGTCCTGGGGATCAGCCAGGGCAAGCAATGGGGAAAGTCCGGTGCAAATCCGGCGCTGTGCCGCAACTGTGATGGGCTGAGGCCCTCAGTCAGGATGCCCGCCTGCGGCTTTGGCTCAAAG
>CYA_0167(metE) Score=45.8 Pos=-612 [Synechococcus sp. JA-3-3Ab]
TAGGATAAAGTCTACTGTCGGTTCTGACGGGGATCAGCCGTCAGAGGCAACGGGGAAAGTGCAGTGAGAATCTGCCGCTGTCCCGCAGCTGTGAGCCGGTTTTGGACTTGGGATCCCTAGTTCGTTGTTGCAAGAGGCCTTGAAACGCAAGCCAGCCCCTCCAAAACTGAGCAAGTCAGAATGCCCGCCGGCGGTTTTTCCACAGTT
>CYA_2373(cbiX) Score=38.1 Pos=-172 [Synechococcus sp. JA-3-3Ab]
GGGCTTGGTGAACGGCAGGCGGCAAGCTAACCTAAGAAGCTCGGGCAGACTGGGGAAAGCGCGGTGCAAATCCGCCACTGTGACGCAACTGTGATGGGATCCCTCCCTCAGCCAGAACACCCACCTGCCCTTGTCCTGTACCCCT
# TF - ArsR: CYA_1125
>CYA_1717(arsB) Score=5.1 Pos=-48 [Synechococcus sp. JA-3-3Ab]
AACAAGTTGTTTTGAT
# RNA - SAM
>CYA_1186(metK) Score=74.6 Pos=-429 [Synechococcus sp. JA-3-3Ab]
TTCTTTATCCAGAGCAGACTGAGGGATCAGGCCCAACGAAGCTGCGGCAACCGGCGGAAGCCTCCGCTACGGTGCCAACTCCTGCGGTTAGTCAGTAACCGAAAGATAAAGG
# RNA - yybP-ykoY
>CYA_0706(COG2119) Score=57.9 Pos=-227 [Synechococcus sp. JA-3-3Ab]
ATTCAGGCTAGAAAGGGAGTAGTCAGGCGGCTTACCGCCCTCTGCATCGACATACTGGCTAAAAACAGCCCGGTGCAAGAGACAAAGCAAGCCCGGCAGGCTGCTTTGGTGACGAGACTTTCACTGAGTTC
>CYA_0678(COG2119) Score=58.9 Pos=-227 [Synechococcus sp. JA-3-3Ab]
CATTCAGACGGAAAGGGAGTAGTCAGGCGGCTTACCGCCCTCTGCATCGACATACTGGCTAAAAACAGCCCGGTGCAAGAGACAAAGCAAGCCCGGCAGGCTGCTTTGGTGACGAGACTTTCACTGAGTTC
# RNA - L10_leader
>CYA_1782(rplJ) Score=60.5 Pos=-228 [Synechococcus sp. JA-3-3Ab]
CACAGTCGAATAGCGAGCCGAAGACAGCAGGGGCCAAGGGGCTTAATGTCCTGCCGAGGTTTGAGCGGAGTGCTAAGGGATCCCGTTGTGGACTGCTAGGTTACGCTTGTCTCAATGCGTCTCGGCTATGGCTGAGGCGCATTCTCTTTGGCGGCTC
# RNA - L21_leader
>CYA_2052(rplU) Score=18.9 Pos=-55 [Synechococcus sp. JA-3-3Ab]
ATGCTCGGATCAGGTTGCAAGACCCCTAGGGGCACCTGTACGGCAAG
# RNA - glnA
>CYA_0922(IF17) Score=48.9 Pos=-188 [Synechococcus sp. JA-3-3Ab]
AATCGTTCATCCTCTCGCCTGCTGTTTGGCTTATCGTGGAGCAAGACGGCAGCCGGAGGACGGAAGTAGGGAGCTATCCCGAAGGAACGCGCC