# TF - LiuR: H16_A0165
>H16_A0602(paaH) Score=5.1 Pos=-47 [Ralstonia eutropha H16]
GTTTACGTAAACGGCAAC
>H16_A0602(paaH) Score=6.6 Pos=-53 [Ralstonia eutropha H16]
ATTGACGTTTACGTAAAC
>H16_A0280(mcm) Score=4.2 Pos=-133 [Ralstonia eutropha H16]
GTTAACGTCAACGTCATA
>H16_A0280(mcm) Score=6 Pos=-139 [Ralstonia eutropha H16]
CTTTACGTTAACGTCAAC
>H16_A0166(paaI) Score=5.3 Pos=-87 [Ralstonia eutropha H16]
GTTTACGTAAACGTCAAT
>H16_A0166(paaI) Score=6.6 Pos=-93 [Ralstonia eutropha H16]
ATTGACGTTTACGTAAAC
>H16_A0164(h16_A0164) Score=6.3 Pos=-130 [Ralstonia eutropha H16]
ATTGACGTTTACGTTAGC
>H16_A0164(h16_A0164) Score=5.5 Pos=-124 [Ralstonia eutropha H16]
GTTTACGTTAGCGTCAAC
>H16_A0165(liuR) Score=4.8 Pos=-93 [Ralstonia eutropha H16]
GCTAACGTAAACGTCAAT
>H16_A0165(liuR) Score=6.4 Pos=-99 [Ralstonia eutropha H16]
GTTGACGCTAACGTAAAC
# TF - IscR: H16_A1157
>H16_A1157(iscR) Score=6.8 Pos=-51 [Ralstonia eutropha H16]
ATACTTGACGGAAACGATCAAGTAT
>H16_A1157(iscR) Score=6.9 Pos=-80 [Ralstonia eutropha H16]
GTAGTTGACTGAATTAGTCGGGTAC
# TF - NrdR: H16_A2835
>H16_A3235(nrdA) Score=5 Pos=-240 [Ralstonia eutropha H16]
ACACTATATCTAGTAG
>PHG240(nrdD) Score=5.3 Pos=-67 [Ralstonia eutropha H16]
AAACTACATATAGTGT
>PHG240(nrdD) Score=3.8 Pos=-36 [Ralstonia eutropha H16]
TCCCCGCATCTAGTGT
# TF - PsrA: H16_A3736
>H16_A2569(fabH) Score=2.5 Pos=-200 [Ralstonia eutropha H16]
CATCAAACGCGGGTATGATG
>H16_A3736(psrA) Score=4 Pos=-104 [Ralstonia eutropha H16]
CTTCGTACAGCTGTTTCAAG
# TF - FadP: H16_A0459
>H16_A0459(fadP) Score=4.9 Pos=-143 [Ralstonia eutropha H16]
CTGAACGACCGTTCTT
>H16_A0814(etfB) Score=5.5 Pos=-98 [Ralstonia eutropha H16]
TAGTACGATCGTTCGA
>H16_A1324(etfD) Score=5.1 Pos=-248 [Ralstonia eutropha H16]
AAGAACGACCGTTCCA
>H16_A2794(fadD2) Score=5.4 Pos=-74 [Ralstonia eutropha H16]
TAGAACGATCGTTCGG
>H16_A1554(RSc1772) Score=5.3 Pos=-97 [Ralstonia eutropha H16]
TCGAACGATCGTTCAC
>H16_A1526(fadB) Score=5.5 Pos=-214 [Ralstonia eutropha H16]
TTGAACGACCGTGCTA
>H16_A1197(acsA) Score=5.5 Pos=-91 [Ralstonia eutropha H16]
TAGAACGATCGTTCGC
>H16_A0293(nppD) Score=5.2 Pos=-59 [Ralstonia eutropha H16]
TCGAACGACCGTTCAT
>H16_A0165(liuR) Score=4.9 Pos=-32 [Ralstonia eutropha H16]
ACGAACGACCGTTCAC
>H16_A0217(Rmet_0145) Score=5.6 Pos=-46 [Ralstonia eutropha H16]
TCGAACGATCGTGCTA
>H16_A1102(paaH1) Score=4.9 Pos=-43 [Ralstonia eutropha H16]
ACGTACGATCGTGCTA
>H16_A3288(fadD1) Score=4.7 Pos=-34 [Ralstonia eutropha H16]
TCGAACGACCATTCAG
>H16_A1066(RSc2046) Score=5.3 Pos=-87 [Ralstonia eutropha H16]
CCGAACGGTCGTTCTA
>H16_A1066(RSc2046) Score=5.2 Pos=-64 [Ralstonia eutropha H16]
TAGCACGACCGTTCAC
>H16_A1445(bktB) Score=4.5 Pos=-73 [Ralstonia eutropha H16]
AAGTACGCTCGTTCGA
>H16_A1519(alkK) Score=4.4 Pos=-55 [Ralstonia eutropha H16]
TAGTACGGTTGTTCGT
# TF - LexA: H16_A2281
>H16_B1060(imuA) Score=6.3 Pos=-72 [Ralstonia eutropha H16]
TACTGTATAAATATACAGTT
>H16_A0544(recA) Score=6.1 Pos=-159 [Ralstonia eutropha H16]
TACTGTTTTTTTATACAGTA
>H16_A2281(lexA) Score=6 Pos=-101 [Ralstonia eutropha H16]
TACTGTTTAAACATACAGTG
>H16_A2281(lexA) Score=5.4 Pos=-121 [Ralstonia eutropha H16]
TACTGTATAAAATCACAGCA
>H16_A0305(uvrD) Score=5.7 Pos=-68 [Ralstonia eutropha H16]
CCCTGTATGGATATACAGTT
>H16_A1352(H16_A1352) Score=5.9 Pos=41 [Ralstonia eutropha H16]
TACTGTACATCCATACAGTA
>H16_B1265(PF06733) Score=6.3 Pos=-103 [Ralstonia eutropha H16]
TACTGTATATTCATACAGTT
>H16_B0943(BPSS1334) Score=5.3 Pos=-32 [Ralstonia eutropha H16]
ACCTGTATGGATGAACAGTA
>H16_B0943(BPSS1334) Score=6.4 Pos=-51 [Ralstonia eutropha H16]
TACTGTATATATTTACAGTA
>H16_B1571(uvrA) Score=5.7 Pos=-72 [Ralstonia eutropha H16]
GACTGTATGGATGTACAGTG
>H16_B2553(H16_B2553) Score=6 Pos=-51 [Ralstonia eutropha H16]
GACTGTATATTCGTACAGTA
>H16_A0887(PF04055) Score=6.5 Pos=-44 [Ralstonia eutropha H16]
TACTGTATATATATACAGTG
# TF - Fur: h16_B0116, h16_A3143
>H16_B1683(h16_B1683) Score=4.7 Pos=-195 [Ralstonia eutropha H16]
AATGAGAATGATTATCAGG
>H16_B1684(fhuF) Score=4.7 Pos=-74 [Ralstonia eutropha H16]
CCTGATAATCATTCTCATT
>H16_B0117(h16_B0117) Score=4.5 Pos=-253 [Ralstonia eutropha H16]
AATGGGAATCGATCTCATT
>H16_B0117(h16_B0117) Score=5.2 Pos=-159 [Ralstonia eutropha H16]
AATGCGAATTGTTATCATT
>H16_B2476(h16_B2476) Score=5 Pos=-73 [Ralstonia eutropha H16]
AATGCGAATTATTCGCATT
>H16_B1976(h16_B1976) Score=4.9 Pos=-223 [Ralstonia eutropha H16]
AATACAAACCATTCTCATT
>H16_A0327(bfd) Score=5.2 Pos=-89 [Ralstonia eutropha H16]
AATGGGAATTGTTATCATT
>H16_B0085(h16_B0085) Score=5.2 Pos=-80 [Ralstonia eutropha H16]
AATGAAAACGATTTTCATT
>H16_A2532(h16_A2532) Score=5.3 Pos=-208 [Ralstonia eutropha H16]
AATAAGAATCATTATCGTT
>H16_B2095(fepA) Score=5 Pos=-129 [Ralstonia eutropha H16]
TATGAGAATGATTGTTATT
>H16_A3182(h16_A3182) Score=4.7 Pos=-153 [Ralstonia eutropha H16]
AATAGGAATAATTCGCAAT
>H16_A0796(h16_A0796) Score=5.5 Pos=-87 [Ralstonia eutropha H16]
ATTGAGAATCATTATTATT
>H16_A2535(hemP) Score=5.6 Pos=-81 [Ralstonia eutropha H16]
AATGATAACAATTCTCATT
>H16_B1489(h16_B1489) Score=4.8 Pos=-80 [Ralstonia eutropha H16]
AATAGGAATCATTCTGATT
>H16_A1450(h16_A1450) Score=5 Pos=-330 [Ralstonia eutropha H16]
AATGCGAATCATTACCATT
>H16_A1451(h16_A1451) Score=5 Pos=-46 [Ralstonia eutropha H16]
AATGCGAATCATTACCATT
>H16_B1100(h16_B1100) Score=4.7 Pos=-84 [Ralstonia eutropha H16]
ATTACGAATTATTCGCATT
>H16_B1688(h16_B1688) Score=5.2 Pos=-170 [Ralstonia eutropha H16]
AATGATAATGATTTGTATT
>H16_B1689(mbtH) Score=5.2 Pos=-118 [Ralstonia eutropha H16]
AATACAAATCATTATCATT
>H16_B0785(h16_B0785) Score=4.6 Pos=-86 [Ralstonia eutropha H16]
ATGAGAAATTATTATCATT
# TF - LiuQ: H16_A1970
>H16_A1970(h16_A1970) Score=5.3 Pos=-72 [Ralstonia eutropha H16]
TTGAGTAAAGCTCAA
>H16_A1970(h16_A1970) Score=5 Pos=-247 [Ralstonia eutropha H16]
GTGAGTGTTACTCAA
>H16_A1971(h16_A1971) Score=5 Pos=-59 [Ralstonia eutropha H16]
TTGAGTAACACTCAC
>H16_A1971(h16_A1971) Score=5.3 Pos=-234 [Ralstonia eutropha H16]
TTGAGCTTTACTCAA
# TF - Zur: h16_A0196
>H16_B2121(h16_B2121) Score=5.5 Pos=-58 [Ralstonia eutropha H16]
CAATTGCAATTGAGTTGCGTTAA
>H16_A0193(yciC) Score=6 Pos=-75 [Ralstonia eutropha H16]
AATTCGCAACCTTGTTGCAACAA
>H16_A2738(zip) Score=6.4 Pos=-35 [Ralstonia eutropha H16]
TTATTGCAACATTGTTGCGTTAG
# TF - ModE: H16_A0672
>H16_A0677(modA) Score=5 Pos=-89 [Ralstonia eutropha H16]
AGCGCTATATACAGACGTATATTGCGCG
# TF - NorR: PHG246, H16_B2325
>H16_B2325(norR) Score=4.3 Pos=-34 [Ralstonia eutropha H16]
CGCGGTACTTATCACCCTT
>H16_B2325(norR) Score=5 Pos=-60 [Ralstonia eutropha H16]
GACGGTAATTAATACCCTA
>PHG246(norR) Score=5.1 Pos=-35 [Ralstonia eutropha H16]
CATGGTATATTTGACCCGG
>PHG246(norR) Score=5.3 Pos=-61 [Ralstonia eutropha H16]
TACGGTCATATTTACCTTA
>PHG245(norA) Score=5.3 Pos=-108 [Ralstonia eutropha H16]
TAAGGTAAATATGACCGTA
>H16_B2324(norA) Score=4.9 Pos=-154 [Ralstonia eutropha H16]
CATGGTTAAAAATACCGTA
>H16_B2324(norA) Score=4.3 Pos=-136 [Ralstonia eutropha H16]
AAGGGTGATAAGTACCGCG
>H16_B2324(norA) Score=5 Pos=-110 [Ralstonia eutropha H16]
TAGGGTATTAATTACCGTC
>PHG245(norA) Score=4.8 Pos=-153 [Ralstonia eutropha H16]
CATGGTGATAAATACCGGT
>PHG245(norA) Score=5.1 Pos=-134 [Ralstonia eutropha H16]
CCGGGTCAAATATACCATG
# TF - Dnr: PHG262
>H16_B2277(nirS) Score=4.6 Pos=-123 [Ralstonia eutropha H16]
GTTTGATGCCAGTCAATT
>PHG252(nosZ) Score=5 Pos=-110 [Ralstonia eutropha H16]
TTTTGATTCGAGTCAAGT
# TF - HexR: H16_A1177
>H16_A1178(edd) Score=5.2 Pos=-222 [Ralstonia eutropha H16]
ATGTAGAGATTCTACAT
>H16_A1178(edd) Score=5.3 Pos=-71 [Ralstonia eutropha H16]
CTGTAGAAAATCTACAT
>H16_A1177(hexR) Score=5.3 Pos=-200 [Ralstonia eutropha H16]
ATGTAGATTTTCTACAG
>H16_A1177(hexR) Score=5.2 Pos=-49 [Ralstonia eutropha H16]
ATGTAGAATCTCTACAT
# TF - SdhR: H16_A2633
>H16_B0568(acnB) Score=6.6 Pos=-104 [Ralstonia eutropha H16]
TCTTCACTCTTATATAAGATATAAGA
>H16_B0568(acnB) Score=5.8 Pos=-97 [Ralstonia eutropha H16]
TCTTATATAAGATATAAGACATTTGA
>H16_A2227(aceA) Score=5.2 Pos=-128 [Ralstonia eutropha H16]
TCTACACTCTTATATAAGACTCATGA
>H16_A2211(aceA2) Score=6.1 Pos=-132 [Ralstonia eutropha H16]
TCTTATGTCTTATATAAGACTTTGCC
>H16_A2634(mdh) Score=7.9 Pos=-379 [Ralstonia eutropha H16]
TCTTATGTCTTATATAAGACATATGA
>H16_A3056(icd) Score=6.3 Pos=-168 [Ralstonia eutropha H16]
TCTTGTGTCTTATATAAGACTGAAGG
>H16_A2633(sdhR) Score=7.9 Pos=-77 [Ralstonia eutropha H16]
TCATATGTCTTATATAAGACATAAGA
# RNA - FMN
>H16_B1223(ribB) Score=96 Pos=-309 [Ralstonia eutropha H16]
TACGTCTTCAGGGCGGGGTGAAAGTCCCCACCGGCGGTATGCCGCGGCGCGCAGTGCGTGTCCGGCGAGCCCGCGAGCGCTCGCATTCCCGTGCGAGGTCAGCAGACCTGGTGAGAGGCCAGGGCCGACGGTCATAGTCCGGATGAAAGAAGATGGGCGG
# RNA - TPP
>H16_A0235(thiC) Score=66.5 Pos=-201 [Ralstonia eutropha H16]
GGATGAAACAGGGGTGCCGTACGGATGGGCCGTGCGGCTGAGAGAGTCCCTTCGAACCCGATCCGGCTAGTACCGGCGTGGGAAGTTTCACAAGACCAAGTCT
# RNA - Cobalamin
>H16_A2972(btuB) Score=24.1 Pos=-219 [Ralstonia eutropha H16]
ACCGGCCACACGCCACTGAACCGCAGGTTCGGGAAGGCGCCGG
# TF - NsrR: H16_A3534
>H16_A3534(nsrR) Score=5.3 Pos=-39 [Ralstonia eutropha H16]
CTTGCATCCTGGATGCATC
>H16_A3533(hmp) Score=5.6 Pos=-41 [Ralstonia eutropha H16]
CATGCATTTAATTTGCATG
# TF - LldR: H16_B0094
>H16_B0094(lldR) Score=5.7 Pos=-113 [Ralstonia eutropha H16]
AATTGGTTGGACCAATC
>H16_B0093(lldE) Score=6.1 Pos=-84 [Ralstonia eutropha H16]
GATTGGTCCAACCAATT
# TF - NagQ: H16_A0310
>H16_A0310(nagQ) Score=-2.5 Pos=-308 [Ralstonia eutropha H16]
AATACCA---AAAACCA
>H16_A0311(ptsI) Score=7.7 Pos=-101 [Ralstonia eutropha H16]
TGGTTTT---TGGTATT
# TF - NtrC: H16_A2332
>H16_A3298(dppA) Score=4.7 Pos=-93 [Ralstonia eutropha H16]
CGCACCAAAACGCAGCG
>H16_B1234(amtB) Score=4.9 Pos=-188 [Ralstonia eutropha H16]
CGCGCCATTTTGGCGCA
>H16_B1234(amtB) Score=5.1 Pos=-221 [Ralstonia eutropha H16]
CGCACCATAACGGTTCA
>H16_A2335(glnA) Score=4.7 Pos=-295 [Ralstonia eutropha H16]
TGCACCATTGTGGTGTT
>H16_A2334(ntrZ) Score=4.7 Pos=-95 [Ralstonia eutropha H16]
TGCACCAGAAAGGGGCG
# RNA - Glycine
>H16_A3619(gcvT) Score=46 Pos=-332 [Ralstonia eutropha H16]
GCATCCGACCGGGAGAGCGCGCATCGCCTGCGCCGCCGAAGGGGTATCACCCGAAAACTCTCAGGCACCACGGACCGATCGGATCGGCA
>H16_A3619(gcvT) Score=37.5 Pos=-223 [Ralstonia eutropha H16]
TGCCGAACTCTGGAGAGCGGCACCCGCCATTCGTGGCGAGCGTGCCCACCGAAGGGGCGCACGAGGACGGGGTCCGGCAGGATCCGCCTTGTAATCTCTCAGGTATCGAGGACAGAGGGGTCATCCG
>H16_B0508(dadA) Score=35.8 Pos=-176 [Ralstonia eutropha H16]
GTCAGTGCACTCTGAAGAATGCCGGACGCTATCGTCCGCCGGCATACCGAAGGAGCAAGCGCGCCCCGCCCTCGCGGCCGGGTGGCGTGAATCTCTCAGGTCCAGAACAGAGGGGGCGTC
>H16_B0508(dadA) Score=53.6 Pos=-275 [Ralstonia eutropha H16]
CAATGTGATGCAGGGAGAGACTGTCGCGGTGCCCGCCGCGGACAGCGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCAAAAGGACCGGCATCACCAG
# RNA - SAH_riboswitch
>H16_A0244(ahcY) Score=52 Pos=-237 [Ralstonia eutropha H16]
ACTCCGAGGAGCGTTGCAACGGATGGAGGCCTGCGAAGCACATCGCGCGGCCGGCGGCACAGCCGCCCCATGCCATCCGCCAGGCTCGGACTGTCTTCAACGGCGCTCGCTGATCCG
# RNA - yybP-ykoY
>H16_A2702(ykoY) Score=73.3 Pos=-233 [Ralstonia eutropha H16]
TGTCCCTCAAAGGGGAGTAGCTCCGGGGCCCATGCCCTTAGCACAATCGTCATTCCGGGACCCTTGTCCCCGGTTGTGCTGACTACCGGCGTGCATACCGCGCCAGTGGTCGAGCAAGACCTTTGCAACCTGGAC
# RNA - sucA
>H16_A2325(sucA) Score=76.7 Pos=-88 [Ralstonia eutropha H16]
TTTGCGATCCGCTAACCGGTCAAGCCGTGTCGCGGAAGGTTGAATAACCCGCTGAACTCCGGCATTCCCGGAGAATAGTGAGCG
# TF - RutR: H16_B1594
>H16_B1597(ribA2) Score=7.3 Pos=-43 [Ralstonia eutropha H16]
ACCTGACCATTTGGTCAGGA
# TF - PhnF: H16_B1289
>H16_B1288(phnG) Score=7 Pos=-26 [Ralstonia eutropha H16]
TCTAAACGTATAGACGTATAGG
>H16_B1289(phnF) Score=7 Pos=-174 [Ralstonia eutropha H16]
CCTATACGTCTATACGTTTAGA
# TF - PaaR: H16_A3526
>H16_A0142(paaG) Score=6.2 Pos=-72 [Ralstonia eutropha H16]
ATTAACCGACCGATCGGTTGGC
>H16_A3311(paaF) Score=5.7 Pos=-90 [Ralstonia eutropha H16]
GCCGACCGACTGGTCGGTTTAT
>H16_A3520(paaA) Score=5.7 Pos=-79 [Ralstonia eutropha H16]
ATTGACCGACCGGTCGGCATAT
# TF - HrcA: H16_A1133
>H16_A0705(groS) Score=7.8 Pos=-121 [Ralstonia eutropha H16]
TTAGCACTCGTCAGGGGTGAGTGCTAA
>H16_A0354(rpoH) Score=7.9 Pos=-104 [Ralstonia eutropha H16]
TTAGCACTCACCCGGCCTGAGTGCTAA
# TF - SoxR: H16_B2319
>H16_B2318(PF01042) Score=6.4 Pos=-73 [Ralstonia eutropha H16]
ACCTCAATTTAGGTTGAGGT
# TF - CueR: H16_A3667
>H16_A2173(copA2) Score=5.4 Pos=-358 [Ralstonia eutropha H16]
ACCTTCCAACGATGGGAACCT
>H16_A3668(copA) Score=6 Pos=-61 [Ralstonia eutropha H16]
ACCTTCCAATGATGGTAAGGT
>H16_A3669(copZ) Score=5.5 Pos=-81 [Ralstonia eutropha H16]
CGCTTCCCACCATGGGAAGGT
# TF - MerR: H16_B0903
>H16_B0904(h16_B0904) Score=6.3 Pos=-142 [Ralstonia eutropha H16]
ACTCCGTACCTTGGTACGGACC
# TF - CadR-PbrR: H16_A3607
>H16_A3607(cadR) Score=6.1 Pos=-42 [Ralstonia eutropha H16]
ACCCTGTAGTAGTTACAGGGT
>H16_B1644(cadA) Score=6.4 Pos=-61 [Ralstonia eutropha H16]
ACTCTGTAGTCGCTACAGGGT
# TF - HutC: H16_A3019
>H16_A3018(hutH) Score=5.6 Pos=-26 [Ralstonia eutropha H16]
TAAGCTGTATAGACAGGAAC
>H16_A3022(hisX) Score=5.6 Pos=-93 [Ralstonia eutropha H16]
TGACTTGTATATACAGGTAC
>H16_A3022(hisX) Score=5.2 Pos=-249 [Ralstonia eutropha H16]
TGTCCTGTCTATACAGCAGC
>H16_A0695(hutU) Score=5.4 Pos=-83 [Ralstonia eutropha H16]
ATGCCTGTATATACAGGACT
# TF - HpxR: H16_B0864
>H16_B0861(uraA) Score=6.7 Pos=-119 [Ralstonia eutropha H16]
TTACCAAAACGTTTTTGTTT
# TF - PtxS: H16_B1806
>H16_B1806(ptxS) Score=4.9 Pos=-33 [Ralstonia eutropha H16]
TCGTGAAACTGGTTTCACCG
>H16_B1807(kguS) Score=6.2 Pos=-79 [Ralstonia eutropha H16]
TCCTGAAACCGGTTTCAAAA
# TF - RSc1790: H16_B1599
>H16_B1599(RSc1790) Score=6.7 Pos=-2 [Ralstonia eutropha H16]
CAATGAAAACGTTTTCATCC
# TF - H16_B1761: H16_B1761
>H16_B1761(H16_B1761) Score=4.6 Pos=-159 [Ralstonia eutropha H16]
TATTGTTGAACAATA
>H16_B1761(H16_B1761) Score=4.2 Pos=-73 [Ralstonia eutropha H16]
TATTGTTCAACAAAG
>H16_B1760(COG2814) Score=4.6 Pos=-191 [Ralstonia eutropha H16]
TATTGTTCAACAATA
# TF - PhnR2: H16_B1949
>H16_B1949(phnR2) Score=5.2 Pos=-83 [Ralstonia eutropha H16]
ATTGTTGACAAT
>H16_B1950(phnS) Score=5.2 Pos=-192 [Ralstonia eutropha H16]
ATTGTCAACAAT
# TF - SdaR: H16_A1320
>H16_A1320(sdaR) Score=5.9 Pos=-31 [Ralstonia eutropha H16]
AAGCTGTCTGACAGCCT
# TF - H16_B2241: H16_B2241
>H16_B2241(H16_B2241) Score=5.4 Pos=-47 [Ralstonia eutropha H16]
ACTTGTCATAACACGC
# TF - UraR: H16_A1008
>H16_A1008(uraR) Score=5.2 Pos=-75 [Ralstonia eutropha H16]
ATTGTCAACAAT
>H16_A1008(uraR) Score=5.2 Pos=-107 [Ralstonia eutropha H16]
TTTGTTGACAAT
>H16_A1363(atzB) Score=3.4 Pos=-106 [Ralstonia eutropha H16]
TTTGTGGACAGG
>H16_B2481(COG1953) Score=4.7 Pos=-70 [Ralstonia eutropha H16]
TTTGTAGACAAT
>H16_A1009(pucM) Score=5.2 Pos=-234 [Ralstonia eutropha H16]
ATTGTTGACAAT
>H16_A1009(pucM) Score=5.2 Pos=-202 [Ralstonia eutropha H16]
ATTGTCAACAAA
>H16_B2460(allC) Score=4 Pos=-27 [Ralstonia eutropha H16]
ATTGCGGACAAT
>H16_B2481(COG1953) Score=4.5 Pos=-125 [Ralstonia eutropha H16]
AATGTTGACAAT
# TF - UreR: H16_B2456
>H16_B2455(ureH) Score=3.9 Pos=-119 [Ralstonia eutropha H16]
ACTGGTCTGATAATT
>H16_B2466(h16_B2466) Score=5.7 Pos=-61 [Ralstonia eutropha H16]
ACTGGTCATACCAGT
>H16_B2466(h16_B2466) Score=4.5 Pos=-52 [Ralstonia eutropha H16]
ACCAGTATGACCAGA
>H16_B2455(ureH) Score=5.9 Pos=-57 [Ralstonia eutropha H16]
ACTGGTCAGACCAGT
>H16_B2459(aimE) Score=5.7 Pos=-71 [Ralstonia eutropha H16]
ACTGGTCATACCAGT
>H16_B2456(ureR) Score=3.9 Pos=-119 [Ralstonia eutropha H16]
AATTATCAGACCAGT
>H16_B2458(h16_B2458) Score=5.7 Pos=-41 [Ralstonia eutropha H16]
ACTGGTATGACCAGT
>H16_B2456(ureR) Score=5.9 Pos=-181 [Ralstonia eutropha H16]
ACTGGTCTGACCAGT
# TF - MetR: H16_B1580
>H16_B1580(metR) Score=5.7 Pos=-51 [Ralstonia eutropha H16]
TATGAATGAGTTTCATA
>H16_B1581(metE) Score=5.7 Pos=-96 [Ralstonia eutropha H16]
TATGAAACTCATTCATA
# TF - TauR: H16_B1891
>H16_B0888(tauA) Score=8.8 Pos=-103 [Ralstonia eutropha H16]
CTGGTCCCAG-------------CTGGTCCTAT
>H16_B2225(tauC2) Score=7.4 Pos=-57 [Ralstonia eutropha H16]
CTGGCCGAAG-------------CTGGCGCAAG
>H16_B1892(tauX) Score=9.5 Pos=-113 [Ralstonia eutropha H16]
CTGGCCCAAG-------------CTGGCGCTAC
# TF - GabR: H16_B0980
>H16_B0981(gabT) Score=9.7 Pos=-134 [Ralstonia eutropha H16]
ATTGGCAC-(15)-AGCGGTAC-(9)-GGGCCAAG
# TF - FdsR: H16_A0639
>H16_A0640(fdsG) Score=5.7 Pos=-65 [Ralstonia eutropha H16]
ATAGGAAAAAAATAGCATAT
>H16_A0639(fdsR) Score=5.7 Pos=-105 [Ralstonia eutropha H16]
ATATGCTATTTTTTTCCTAT
>H16_A0640(fdsG) Score=5.6 Pos=-152 [Ralstonia eutropha H16]
ATATGTAGAAAATAGCTTAT
>H16_A0639(fdsR) Score=5.6 Pos=-18 [Ralstonia eutropha H16]
ATAAGCTATTTTCTACATAT
# TF - ModE3: H16_A1020
>H16_A1020(modE3) Score=5.9 Pos=-127 [Ralstonia eutropha H16]
TTATGTTTTTCCAGACATAA
>H16_A1019(tupB) Score=5.9 Pos=-37 [Ralstonia eutropha H16]
TTATGTCTGGAAAAACATAA
# TF - PdxQ3: H16_B1957
>H16_B1958(PF01810) Score=11 Pos=-82 [Ralstonia eutropha H16]
TTTGTATC-(1)-AGAACAAT-(6)-CGTGTATC
# TF - H16_B0275: H16_B0275
>H16_B0276(COG1917) Score=8.3 Pos=-84 [Ralstonia eutropha H16]
CTCTGGTACA--------------TTTTGGTTCT
# TF - H16_B1411: H16_B1411
>H16_B1407(PF00583) Score=9.5 Pos=-93 [Ralstonia eutropha H16]
CGATGGCCTAGT-(12)-ACATGTGCCTGT-(2)-ACTGTGTCATCG
>H16_B1410(h16_B1410) Score=9.2 Pos=-163 [Ralstonia eutropha H16]
CGATGGCCCAGT-(12)-ACATGTGCCTGT-(2)-ACTGAGTCATCG
# TF - H16_A0963: H16_A0963
>H16_A0964(PF02627) Score=12.6 Pos=-84 [Ralstonia eutropha H16]
ATTGGTCTA-(15)-ATTGGCAGT-(4)-GGGGCCAAT
# TF - OapR: H16_A0271
>H16_A0272(oapT) Score=14.3 Pos=-161 [Ralstonia eutropha H16]
GCCTGTACGGTT-(11)-AACTGCACGGTA-(15)-GACTGTATATTT
# TF - H16_A2655: H16_A2655
>H16_A2656(h16_A2656) Score=15.5 Pos=-72 [Ralstonia eutropha H16]
CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG
>H16_A3243(PF01810) Score=13.3 Pos=-91 [Ralstonia eutropha H16]
GCGCCGTATCG-(13)-AAATTGTACCG-(0)-GTACTGTACCG
# TF - YdcR: H16_A1589
>H16_A1590(h16_A1590) Score=8.9 Pos=-100 [Ralstonia eutropha H16]
AACTGATACGTAAAA---------ATCTGATGCTGTTAT
>H16_B1177(PF01654) Score=8.6 Pos=-307 [Ralstonia eutropha H16]
AACTGATACGGTATT---------AGGTGATGCTGTTCG
# TF - Rmet_5631: H16_B1169, H16_B1853
>H16_B1169(Rmet_5631) Score=5.4 Pos=-7 [Ralstonia eutropha H16]
ATTTTGAATGCAAATT
>H16_B1169(Rmet_5631) Score=5.4 Pos=-163 [Ralstonia eutropha H16]
GTTTTGAATGCAAAAT
>H16_B1170(sgaA) Score=5.4 Pos=-189 [Ralstonia eutropha H16]
AATTTGCATTCAAAAT
>H16_B1170(sgaA) Score=5.4 Pos=-33 [Ralstonia eutropha H16]
ATTTTGCATTCAAAAC
>H16_B1853(Rmet_5631) Score=4.9 Pos=-7 [Ralstonia eutropha H16]
ACATTGCATGCAAACT
# TF - PdxQ: H16_B1977
>H16_B1978(pdxO2) Score=14.3 Pos=-94 [Ralstonia eutropha H16]
GACTGGCCCAT-(13)-AACCGGACCTT-(4)-TTGTGCCAGTT
# TF - H16_B1468: H16_B1468
>H16_B1461(cydA) Score=6.4 Pos=-283 [Ralstonia eutropha H16]
AACTGAGCTTGAACG----------AACTGTATCCCTAGC
>H16_B1466(moaA) Score=7.1 Pos=-70 [Ralstonia eutropha H16]
AACTGTTCTGCTTCC----------ATTTGTACGCCTGCC
>H16_B1471(fdhA2) Score=6.6 Pos=-146 [Ralstonia eutropha H16]
AACTGTGCTCCCCGG----------CTTTGTATGTACCCG
# TF - YrdX: H16_A1958
>H16_A1957(h16_A1957) Score=4.6 Pos=-105 [Ralstonia eutropha H16]
GTGGCACAT--GTTGCGGAT
>H16_A1957(h16_A1957) Score=6.5 Pos=-142 [Ralstonia eutropha H16]
CTTGATTGG--ATTGATCGC
# TF - H16_A0970: H16_A0970
>H16_A0972(h16_A0972) Score=20 Pos=-582 [Ralstonia eutropha H16]
ACAGATACAGAAGC-(11)-ATCGTAACAGGGCT-(8)-ATGGCTGTTCCGGT-(11)-CGCGGTGTGCCTGC
>H16_A0970(H16_A0970) Score=14.3 Pos=-119 [Ralstonia eutropha H16]
GCAGGCACACCGCG-(11)-ACCGGAACAGCCAT-(8)-AGCCCTGTTACGAT-(11)-GCTTCTGTATCTGT
>H16_A0971(h16_A0971) Score=20 Pos=-143 [Ralstonia eutropha H16]
ACAGATACAGAAGC-(11)-ATCGTAACAGGGCT-(8)-ATGGCTGTTCCGGT-(11)-CGCGGTGTGCCTGC
# TF - RALTA_A0216: H16_A0278
>H16_A0279(PF11142) Score=20.5 Pos=-80 [Ralstonia eutropha H16]
AACTGTCAGG-(8)-CTGAACAGTT-(7)-AACTGTTCAC-(0)-AACTGTACAT
# TF - MlnR: H16_A2982
>H16_A2982(mlnR) Score=6.6 Pos=-102 [Ralstonia eutropha H16]
TAATCCATAATTATGAATTA
# TF - YrdX3: H16_A1644
>H16_A1643(cyoA2) Score=14.7 Pos=-174 [Ralstonia eutropha H16]
CTTGCATGGAT-(20)-GATGTATGGGT-(37)-ATCCATACAAA
# TF - GguR: H16_B0126
>H16_B0127(gudD) Score=4.9 Pos=-90 [Ralstonia eutropha H16]
CAGTCATACGATGACAG
>H16_B0965(garD) Score=5 Pos=-57 [Ralstonia eutropha H16]
AAGTTGTCAGACAACGT
>H16_B0965(garD) Score=4.6 Pos=-157 [Ralstonia eutropha H16]
GTGTTATCGTACAACTA
>H16_B0131(kdgD) Score=4.8 Pos=-94 [Ralstonia eutropha H16]
TTGTCATACGATGACTG
>H16_B0131(kdgD) Score=5 Pos=-289 [Ralstonia eutropha H16]
ACGTTGTCCTACAACAT
>H16_B0126(gguR) Score=4.9 Pos=-81 [Ralstonia eutropha H16]
CTGTCATCGTATGACTG