# TF - GluR: Tpet_0957
>Tpet_0953(amyE) Score=6 Pos=-52 [Thermotoga petrophila RKU-1]
ATTTGATTATAACGTCATTTAAT
# TF - GalR: Tpet_1556
>Tpet_1552(ganE) Score=5.6 Pos=-75 [Thermotoga petrophila RKU-1]
ACGGTAACGTTTACGT
>Tpet_1557(lacA) Score=5.3 Pos=-28 [Thermotoga petrophila RKU-1]
CCGTGAACGTTCACGA
# TF - AraR: Tpet_0649
>Tpet_0648(araA) Score=6.5 Pos=-62 [Thermotoga petrophila RKU-1]
ATAAAGGTACGTACTTTTAT
>Tpet_0648(araA) Score=4.7 Pos=-164 [Thermotoga petrophila RKU-1]
ATAACGGTACGTACCGATGG
>Tpet_0647(araE) Score=6.5 Pos=-150 [Thermotoga petrophila RKU-1]
ATAAAAGTACGTACCTTTAT
>Tpet_0647(araE) Score=4.7 Pos=-48 [Thermotoga petrophila RKU-1]
CCATCGGTACGTACCGTTAT
>Tpet_0637(abf6) Score=5.7 Pos=-221 [Thermotoga petrophila RKU-1]
AGATAGGTACGTACCAATTT
>Tpet_0637(abf6) Score=5.4 Pos=-38 [Thermotoga petrophila RKU-1]
ATATATGTACGTACAAAATG
>Tpet_0643(glsA) Score=5 Pos=-55 [Thermotoga petrophila RKU-1]
GATAATATACGTACCTAAAT
>Tpet_0636(araN-II) Score=5.4 Pos=-233 [Thermotoga petrophila RKU-1]
CATTTTGTACGTACATATAT
>Tpet_0636(araN-II) Score=5.7 Pos=-50 [Thermotoga petrophila RKU-1]
AAATTGGTACGTACCTATCT
# TF - BglR: Tpet_0891
>Tpet_0891(bglR) Score=6.8 Pos=29 [Thermotoga petrophila RKU-1]
AATtTCTTTCTGAGgAAGATAga
# TF - UgpR: Tpet_0941
>Tpet_0941(ugpR) Score=6.5 Pos=-30 [Thermotoga petrophila RKU-1]
ATATGTAAGCGCTTACAGGA
# TF - HcpR: Tpet_1578
>Tpet_1578(hcpR) Score=6.3 Pos=-28 [Thermotoga petrophila RKU-1]
TCTGTAACAATTGTTACGAG
>Tpet_1577(hcp) Score=6.3 Pos=-81 [Thermotoga petrophila RKU-1]
CTCGTAACAATTGTTACAGA
# TF - HrcA: Tpet_0076
>Tpet_0416(groS) Score=6.4 Pos=-48 [Thermotoga petrophila RKU-1]
TTAGCAGTCGAACGATGAGAGTGCTAA
>Tpet_0054(clpA) Score=6.6 Pos=-51 [Thermotoga petrophila RKU-1]
TTATCAAACGTAATATTTGAGTGCTAA
>Tpet_0544(dnaK) Score=5.9 Pos=-179 [Thermotoga petrophila RKU-1]
TTATCATTCAAAAGTTTCATTTGCTAT
>Tpet_0547(TM0370) Score=6.4 Pos=-49 [Thermotoga petrophila RKU-1]
TTATCAAACGAAAAAAATGATTGCTAA
>Tpet_0076(hrcA) Score=6.5 Pos=-30 [Thermotoga petrophila RKU-1]
TTAGCACTCAAAAGAAGGGAGTGCTAA
# TF - IolR: Tpet_0509
>Tpet_0509(iolR) Score=6.3 Pos=-40 [Thermotoga petrophila RKU-1]
GTTGGTTAGTAAATGAAAACAAA
# TF - KdgR: Tpet_0859
>Tpet_0860(uxaC) Score=5.9 Pos=-32 [Thermotoga petrophila RKU-1]
TGAGAAAACCATTTTCAAA
>Tpet_0859(kdgR) Score=5.9 Pos=-88 [Thermotoga petrophila RKU-1]
TTTGAAAATGGTTTTCTCA
>Tpet_0853(xloE) Score=5.2 Pos=-136 [Thermotoga petrophila RKU-1]
TTTGAAATAATCTTTTACA
>Tpet_0854(xynB) Score=5.2 Pos=-103 [Thermotoga petrophila RKU-1]
TGTAAAAGATTATTTCAAA
>Tpet_0863(xynA1) Score=6 Pos=-139 [Thermotoga petrophila RKU-1]
TTTGAAAGTTCCTTTCACA
>Tpet_0864(xtpF) Score=6 Pos=-199 [Thermotoga petrophila RKU-1]
TGTGAAAGGAACTTTCAAA
# TF - CelR: Tpet_1550
>Tpet_1268(cel12A) Score=5.9 Pos=170 [Thermotoga petrophila RKU-1]
ATGtAAAcATTTTCAT
>Tpet_0951(cbpA) Score=5.9 Pos=-59 [Thermotoga petrophila RKU-1]
ATGAAAACATTTTCAG
>Tpet_0609(celQ) Score=5.6 Pos=-48 [Thermotoga petrophila RKU-1]
GTGAAAACAGTTTCAT
>Tpet_1545(celE) Score=5.7 Pos=-70 [Thermotoga petrophila RKU-1]
ATGTAAACATTTTCAC
>Tpet_0605(TM0312) Score=5.8 Pos=-58 [Thermotoga petrophila RKU-1]
ATGAAAACATTTTCAA
# TF - ManR: Tpet_1544
>Tpet_1542(manB) Score=7.5 Pos=-38 [Thermotoga petrophila RKU-1]
AAATAAGTAAAGTTTACTAATTA
# TF - NiaR: Tpet_1190
>Tpet_1190(niaR) Score=6.9 Pos=-36 [Thermotoga petrophila RKU-1]
TTTACAGCAGGTGTAAA
>Tpet_1148(nadB) Score=6.9 Pos=-39 [Thermotoga petrophila RKU-1]
TTTACAGCAGGTGTAAA
# TF - NrdR: Tpet_1003
>Tpet_1489(metE) Score=4.8 Pos=-55 [Thermotoga petrophila RKU-1]
ACACAACATGTGGTAT
>Tpet_0806(nrdJ) Score=5 Pos=-34 [Thermotoga petrophila RKU-1]
ACACAATATGTTGTTA
>Tpet_0535(nrdG) Score=5.3 Pos=-61 [Thermotoga petrophila RKU-1]
CCACAATATATTGTGG
>Tpet_0535(nrdG) Score=4.1 Pos=-91 [Thermotoga petrophila RKU-1]
CAACAATTTTTTGAGA
>Tpet_0806(nrdJ) Score=4.3 Pos=-64 [Thermotoga petrophila RKU-1]
CTACCAAATGTTGAAT
>Tpet_1489(metE) Score=4.3 Pos=-25 [Thermotoga petrophila RKU-1]
ATACAACAAATGGAGG
>Tpet_0773(TM0152) Score=3.8 Pos=-109 [Thermotoga petrophila RKU-1]
ATACTACAAAATGTAC
>Tpet_0773(TM0152) Score=4.6 Pos=-140 [Thermotoga petrophila RKU-1]
ATACAATATACGGTAT
# TF - RbsR: Tpet_1790
>Tpet_1789(rbsK) Score=6.5 Pos=-56 [Thermotoga petrophila RKU-1]
TTGTGAAAACGATTTCGAAA
>Tpet_1789(rbsK) Score=6.6 Pos=-44 [Thermotoga petrophila RKU-1]
TTTCGAAAACGTTTTCAAAG
# TF - Rex: Tpet_0756
>Tpet_1758(TM0983) Score=5.1 Pos=-41 [Thermotoga petrophila RKU-1]
TTGAGATTTTTTTCACAA
>Tpet_1758(TM0983) Score=4.7 Pos=-62 [Thermotoga petrophila RKU-1]
ATGTTATCATTTTCACAA
>Tpet_1099(cas6) Score=4.9 Pos=-40 [Thermotoga petrophila RKU-1]
ATGATAAAATTATCACAA
>Tpet_0745(TM0179) Score=4.6 Pos=-30 [Thermotoga petrophila RKU-1]
TTGTTATAATAGTAACAA
>Tpet_0530(noxE) Score=4.8 Pos=-32 [Thermotoga petrophila RKU-1]
TCGTGAAAAAATTCTCTT
>Tpet_0697(hycE) Score=5.3 Pos=-30 [Thermotoga petrophila RKU-1]
TTGTGAAATTTTTGACGA
>Tpet_0911(hycA) Score=4.3 Pos=-69 [Thermotoga petrophila RKU-1]
ATGTGAAAAAAATATCAG
>Tpet_0245(dnaX) Score=5.1 Pos=-104 [Thermotoga petrophila RKU-1]
TAGTTATTTTTTTCACGA
>Tpet_1372(TM1420) Score=5 Pos=-69 [Thermotoga petrophila RKU-1]
TaGTGAAAAaTaTaACgt
>Tpet_0723(hycD) Score=5.3 Pos=-54 [Thermotoga petrophila RKU-1]
TTGAGAAATTTATCACAA
>Tpet_0563(adhA) Score=4.7 Pos=-193 [Thermotoga petrophila RKU-1]
TTGTTATGAAATTCACAA
>Tpet_1383(sat) Score=5.1 Pos=-47 [Thermotoga petrophila RKU-1]
TAGTTAAAAAAATAACAA
>Tpet_0563(adhA) Score=5 Pos=-217 [Thermotoga petrophila RKU-1]
GTGAGAAAATTTTCACAA
>Tpet_1206(TM1586) Score=4.9 Pos=-177 [Thermotoga petrophila RKU-1]
GAGTAAAATATTTCACAA
>Tpet_0498(gldA) Score=5.5 Pos=-52 [Thermotoga petrophila RKU-1]
TCGTGAAAAATTTAACAA
>Tpet_0911(hycA) Score=5 Pos=-44 [Thermotoga petrophila RKU-1]
TTGTGAAAAAATTCCCGA
# TF - RhaR: Tpet_1675
>Tpet_1674(rhaM2) Score=6.7 Pos=-56 [Thermotoga petrophila RKU-1]
TTGTGATTAATTTATGATAA
>Tpet_1677(rtpE) Score=5.7 Pos=-78 [Thermotoga petrophila RKU-1]
AGTTGATATCATATTGATAA
>Tpet_1682(ramA) Score=5.3 Pos=-47 [Thermotoga petrophila RKU-1]
TTATGATAAATTTATGATCG
>Tpet_1675(rhaR) Score=4.4 Pos=-29 [Thermotoga petrophila RKU-1]
TTATCATAAATTAATCACAA
# TF - TM1030: Tpet_1720
>Tpet_1722(TM1028) Score=7.1 Pos=-34 [Thermotoga petrophila RKU-1]
ATTTGACTGACCAGTCAATC
# TF - TreR: Tpet_0527
>Tpet_0953(amyE) Score=5.9 Pos=-143 [Thermotoga petrophila RKU-1]
TTATTTTCATTTAACGAAAAAAA
>Tpet_0528(treT) Score=6.1 Pos=-38 [Thermotoga petrophila RKU-1]
ATTAATTCAAGTTACGAATAAAT
# TF - UxaR: Tpet_0481
>Tpet_0484(aldH) Score=6.4 Pos=-28 [Thermotoga petrophila RKU-1]
TGAAACATCAAACATCT
>Tpet_0858(kdgA) Score=6.2 Pos=-29 [Thermotoga petrophila RKU-1]
TTAAACATCACATATCA
>Tpet_0485(Tpet_0485) Score=6.2 Pos=-39 [Thermotoga petrophila RKU-1]
TGAAATATCAAACATCT
# TF - XylR: Tpet_0814
>Tpet_0608(xtpN) Score=4.9 Pos=-51 [Thermotoga petrophila RKU-1]
GAAAGTTCTTTAGAGGAAAAAAT
>Tpet_0854(xynB) Score=5.4 Pos=-189 [Thermotoga petrophila RKU-1]
TTTTTTTCCTTTCGGGAAATATT
>Tpet_0853(xloE) Score=5.4 Pos=-54 [Thermotoga petrophila RKU-1]
AATATTTCCCGAAAGGAAAAAAA
>Tpet_0863(xynA1) Score=5.8 Pos=-87 [Thermotoga petrophila RKU-1]
ATTTTTTCTTTACAAAAAATAAC
>Tpet_0864(xtpF) Score=5.8 Pos=-255 [Thermotoga petrophila RKU-1]
GTTATTTTTTGTAAAGAAAAAAT
>Tpet_0814(xylR) Score=5.2 Pos=-61 [Thermotoga petrophila RKU-1]
ATTATTTCCCGCATATAATTAAT
>Tpet_1124(xylA) Score=5 Pos=-38 [Thermotoga petrophila RKU-1]
ATAATTGATTGATAGAAAAAATT
# TF - Zur: Tpet_0802
>Tpet_0802(zur) Score=7 Pos=-31 [Thermotoga petrophila RKU-1]
TTGCAAATGCTTTGCATTTGCAG
# TF - ChiR: Tpet_0120
>Tpet_0120(chiR) Score=7 Pos=-43 [Thermotoga petrophila RKU-1]
AAGTTGTTTGCAGCATGCAACTA
# TF - Fur: Tpet_1064
>Tpet_0874(feoA) Score=6.4 Pos=-35 [Thermotoga petrophila RKU-1]
TTTGAGAATCATTCTCAAA
>Tpet_0744(TM0180) Score=5.4 Pos=-51 [Thermotoga petrophila RKU-1]
TTTGAGAAACAATTTCAAA
>Tpet_0121(tdxH) Score=5.6 Pos=-57 [Thermotoga petrophila RKU-1]
ATTGAGAATGGATATCAAA
>Tpet_0537(bcp) Score=6 Pos=-37 [Thermotoga petrophila RKU-1]
ATTGAGAATTAGTTTCAAC
# TF - ZnuR: Tpet_0798
>Tpet_0802(zur) Score=6.9 Pos=-143 [Thermotoga petrophila RKU-1]
TATACCATAATACGGTATA
# TF - ArgR: Tpet_0546
>Tpet_0546(argR) Score=6.7 Pos=-60 [Thermotoga petrophila RKU-1]
ATATTTATGCTATATATAT
>Tpet_1067(argG) Score=6.7 Pos=-37 [Thermotoga petrophila RKU-1]
ATAATTATGCTATCAAGAA
# TF - UgtR: Tpet_1541
>Tpet_1534(ugtE) Score=6.2 Pos=-29 [Thermotoga petrophila RKU-1]
GTAGAAAATTTTCTAT
# TF - PhoB: Tpet_1512
>Tpet_1507(pstS) Score=7.7 Pos=-89 [Thermotoga petrophila RKU-1]
CTTAACA---CTTAACA
# TF - UctR: Tpet_0593
>Tpet_0597(uctP) Score=6.5 Pos=-34 [Thermotoga petrophila RKU-1]
GAAAAAAATATTTTTACC
# TF - TM0766: Tpet_0162
>Tpet_0162(TM0766) Score=7.4 Pos=-35 [Thermotoga petrophila RKU-1]
GTGTAATAGTATAATATTACAG
# TF - Rex1: Tpet_1366
>Tpet_1372(TM1420) Score=6.6 Pos=-119 [Thermotoga petrophila RKU-1]
TTGTGAAGTAGGTAACAA
# RNA - FMN
>Tpet_1113(ribD) Score=115.1 Pos=-61 [Thermotoga petrophila RKU-1]
GATGTGGAGATTATATGGGACCCGAGAGGGTCCCTTTTCTTTTACACAGGGAGGGTGTTGTATGTATGAAACTTTCATGAAAAGAGCGATAGAGCTTGCAAAGAAAGGACTTGGAAGGGTGAA
# RNA - TPP
>Tpet_0142(thi4) Score=69.8 Pos=-162 [Thermotoga petrophila RKU-1]
AACCTTCCCCAGGGGGAGCTCCTATTCCGGGGCTGAGAGGAGGACGGAAGTCCTCGACCCCAAGAACCTGATCCGGGTAATGCCGGCGGAGGGATCGGGGAAGGAGGAAAT
# RNA - Cobalamin
>Tpet_0844(btuF) Score=93 Pos=-230 [Thermotoga petrophila RKU-1]
AGCCTCCCTCACCGTGCGGTACCCTTCGGGGTTCAAAGGGGAAGCCGGTGGAAATCCGGCGCGGGGCCGCCACCGTGACCGGGGACGAAACCCGCAGAACGCCACTGGGGCGATCACCCTGGGAAGGTGCGGGGAGTAGGATGATCCGGAAGCCGGGAAACCCGCCCGCGGTGAAGGGAAACCACC
# RNA - Lysine
>Tpet_1269(asd) Score=85.6 Pos=-266 [Thermotoga petrophila RKU-1]
GACCCGACGGAGGCGCGCCCGAGATGAGTAGGCTGTCCCATCAGGGGAGGAATCGGGGACGGCTGAAAGGCGAGGGGCGCCGAAGGGTGCAGAGTTCCTCCCGCTCTGCATGCCTGGGGGTATGGGGAATACCCATACCACTGTCACGGAGGTCTCTCCGTGGAGAGCCGATCGGGT
# RNA - L10_leader
>Tpet_0464(rplJ) Score=40.2 Pos=-136 [Thermotoga petrophila RKU-1]
TCGAAAACTCAATAAGACGCCGTAGATGGCAGGGCCCTTGGGGTTAAAGATCCTGCCGGAGGCGTCCCAGAAAGGTTCTATGACCTTTTTGTGGACCCTCCGGGGTCCACAAAATTTTTTTTGGGAGG
# RNA - L20_leader
>Tpet_1203(infC) Score=44.1 Pos=-197 [Thermotoga petrophila RKU-1]
AAAAAGCAAGTGGAGGCCAGCCCGGCTTCCCACCCTGGAGCAGGAGGCTACCAGGGTAAATATCCCTGAAAGATTCAGCTTCGAGGGGAAGCGGGCTTTTTGCCCGCTATTTTTTATAGTG
# TF - PuuR: Tpet_0275
>Tpet_0275(puuR) Score=4.8 Pos=-22 [Thermotoga petrophila RKU-1]
ATGTCTGTGATACTGAACAA
>Tpet_0275(puuR) Score=6.8 Pos=0 [Thermotoga petrophila RKU-1]
TTGTCAACTATAGTGGACAA