# TF - ChiR: CTN_1770
>CTN_1770(chiR) Score=6.8 Pos=-44 [Thermotoga neapolitana DSM 4359]
TAGTTGCTTGCAACACGCAACTA
# TF - HcpR: CTN_1404
>CTN_1403(hcp) Score=6.7 Pos=-50 [Thermotoga neapolitana DSM 4359]
CCCGTAACAATTGTTACGGA
# TF - BglR: CTN_0581
>CTN_0660(bglX) Score=6.5 Pos=-49 [Thermotoga neapolitana DSM 4359]
AATTCCTTTCTGAGGAAGATAAT
# TF - GluR: CTN_0774
>CTN_0777(gluE) Score=6.3 Pos=-121 [Thermotoga neapolitana DSM 4359]
ATTTGATTCCGTTGGAAATTAAT
>CTN_0781(amyE) Score=4.8 Pos=-387 [Thermotoga neapolitana DSM 4359]
ATTTgATTAtAccGTcAgTTAAc
# TF - UxaR: CTN_0233
>CTN_0237(uxaP) Score=6.4 Pos=-33 [Thermotoga neapolitana DSM 4359]
TAAAACATCACATATCT
>CTN_0240(uxaX) Score=6.3 Pos=16 [Thermotoga neapolitana DSM 4359]
TGAAATATCACACATCT
>CTN_0627(kdgA) Score=6.2 Pos=-384 [Thermotoga neapolitana DSM 4359]
TTAAACATCAAATATCA
# TF - HrcA: CTN_1724
>CTN_0166(groS) Score=6.2 Pos=-52 [Thermotoga neapolitana DSM 4359]
TTAGCAGTCATGAGTCGAGAGTGCTAA
>CTN_1702(clpA) Score=6.3 Pos=-42 [Thermotoga neapolitana DSM 4359]
TTATCATTCTTAATAATTAAGTGCTAA
>CTN_0304(dnaK) Score=6.2 Pos=-174 [Thermotoga neapolitana DSM 4359]
TTATCATTCATAAGTTTCGTTTGCTAT
>CTN_0301(TM0370) Score=6.4 Pos=-20 [Thermotoga neapolitana DSM 4359]
TTATCAATCGATATTGATGAGTGCTAA
>CTN_1724(hrcA) Score=6.6 Pos=-28 [Thermotoga neapolitana DSM 4359]
TTAGCACTCAAAAGAAAGGAGTGCTAA
# TF - IolR: CTN_0258
>CTN_0258(iolR) Score=6.3 Pos=-40 [Thermotoga neapolitana DSM 4359]
GTTGGTTAGTAAATGAAAACAAA
# TF - KdgR: CTN_0629
>CTN_0629(kdgR) Score=6.1 Pos=-48 [Thermotoga neapolitana DSM 4359]
TGTGAAAATGATTTTCTCA
>CTN_0630(uxaC) Score=6.1 Pos=-33 [Thermotoga neapolitana DSM 4359]
TGAGAAAATCATTTTCACA
>CTN_0633 Score=5.9 Pos=-191 [Thermotoga neapolitana DSM 4359]
TGTGAAAAAGGCTTTCAAA
>CTN_0632(xynA1) Score=5.9 Pos=-91 [Thermotoga neapolitana DSM 4359]
TTTGAAAGCCTTTTTCACA
# TF - CelR: CTN_1353
>CTN_1106(cel12A) Score=5.9 Pos=60 [Thermotoga neapolitana DSM 4359]
ATGtAAAcATTTTCAT
>CTN_0783(cbpA) Score=6 Pos=-57 [Thermotoga neapolitana DSM 4359]
ATGAAAACATTTTCAC
>CTN_0380(celQ) Score=6.2 Pos=4 [Thermotoga neapolitana DSM 4359]
ATGAAAACATTTTCAT
>CTN_1348(celE) Score=5.7 Pos=-70 [Thermotoga neapolitana DSM 4359]
ATGTAAACATTTTCAC
>CTN_0375(TM0312) Score=5.8 Pos=-49 [Thermotoga neapolitana DSM 4359]
ATGAAAACATTTTCAA
# TF - ManR: CTN_1347
>CTN_1345(manB) Score=6.9 Pos=-38 [Thermotoga neapolitana DSM 4359]
AAATAAGTACAGATTACTAATTA
# TF - NiaR: CTN_0856
>CTN_0856(niaR) Score=6.9 Pos=-27 [Thermotoga neapolitana DSM 4359]
TTTACAGCAGGTGTAAA
>CTN_0745(nadB) Score=6.9 Pos=-19 [Thermotoga neapolitana DSM 4359]
TTTACAGCAGGTGTAAA
# TF - NrdR: CTN_0895
>CTN_0571(nrdJ) Score=5 Pos=-7 [Thermotoga neapolitana DSM 4359]
AcACAATATgTTGTta
>CTN_1290(metE) Score=4.3 Pos=-25 [Thermotoga neapolitana DSM 4359]
ATACAACAAATGGAGG
>CTN_0535(TM0152) Score=4.2 Pos=-141 [Thermotoga neapolitana DSM 4359]
CTACTTCATGTTGTGT
>CTN_1290(metE) Score=4.8 Pos=-55 [Thermotoga neapolitana DSM 4359]
ACACAACATGTGGTAT
>CTN_0313(nrdG) Score=5.1 Pos=-54 [Thermotoga neapolitana DSM 4359]
CCACAACATATTGTGG
>CTN_0313(nrdG) Score=4.5 Pos=-84 [Thermotoga neapolitana DSM 4359]
CAACAATTTATTGAGA
>CTN_0535(TM0152) Score=4.5 Pos=-110 [Thermotoga neapolitana DSM 4359]
ATACCATAAGTAGTGT
>CTN_0571(nrdJ) Score=4.4 Pos=-37 [Thermotoga neapolitana DSM 4359]
CCACCACATGTTGAAT
# TF - RbsR: CTN_1627
>CTN_1616(rbsK) Score=6.5 Pos=32 [Thermotoga neapolitana DSM 4359]
TTGTGAAAACGATTTCGAAA
>CTN_1616(rbsK) Score=5.9 Pos=44 [Thermotoga neapolitana DSM 4359]
TTTCGAAAACGATTTCATCA
# TF - Rex: CTN_0518
>CTN_0700(cas6) Score=4.9 Pos=117 [Thermotoga neapolitana DSM 4359]
aTGatAAAATTaTCACAA
>CTN_0508(TM0179) Score=4.4 Pos=-30 [Thermotoga neapolitana DSM 4359]
TTGTTATAATGATATCAA
>CTN_0317(noxE) Score=4.6 Pos=-34 [Thermotoga neapolitana DSM 4359]
TTGTGAAATCTTTCTCTT
>CTN_0686(hycA) Score=4.3 Pos=-61 [Thermotoga neapolitana DSM 4359]
ATGTGAAAAAAATATCAG
>CTN_0686(hycA) Score=5.2 Pos=-36 [Thermotoga neapolitana DSM 4359]
TTGTGAAAAAATTCTCGA
>CTN_0459(hycE) Score=5.3 Pos=8 [Thermotoga neapolitana DSM 4359]
TTGTGAAATTTTTGACGA
>CTN_0485(hycD) Score=5.1 Pos=0 [Thermotoga neapolitana DSM 4359]
TTGAGAATTTTATCACAA
>CTN_1900(dnaX) Score=5.1 Pos=-103 [Thermotoga neapolitana DSM 4359]
TAGTTATTTTTTTCACGA
>CTN_1595(TM0983) Score=5.1 Pos=-32 [Thermotoga neapolitana DSM 4359]
TTGAGATTTTTTTCACAA
>CTN_1072(TM1420) Score=5 Pos=-51 [Thermotoga neapolitana DSM 4359]
TaGTGAAAAaTaTaACgt
>CTN_1191(sat) Score=5.1 Pos=-47 [Thermotoga neapolitana DSM 4359]
TAGTTAAAAAAATAACAA
>CTN_0247(gldA) Score=4.1 Pos=-30 [Thermotoga neapolitana DSM 4359]
TTGTGAAATACGTAACAT
# TF - RhaR: CTN_1500
>CTN_1499(rhaM2) Score=6.7 Pos=-57 [Thermotoga neapolitana DSM 4359]
TTGTGATTAATTTATGATAA
>CTN_1502(rtpE) Score=5.6 Pos=-54 [Thermotoga neapolitana DSM 4359]
TATTGATACTATATTGATAG
>CTN_1500(rhaR) Score=4.4 Pos=-72 [Thermotoga neapolitana DSM 4359]
TTATCATAAATTAATCACAA
# TF - TM1030: CTN_1536
>CTN_1539(CTN_1539) Score=5.9 Pos=-63 [Thermotoga neapolitana DSM 4359]
GATTGACTCATTAGTCAATT
# TF - TreR: CTN_0276
>CTN_0781(amyE) Score=5.9 Pos=-478 [Thermotoga neapolitana DSM 4359]
tTaTtTTCATTTAACGAAaAAAa
>CTN_0277(treT) Score=6.1 Pos=-37 [Thermotoga neapolitana DSM 4359]
ATTAATTCAAGTTACGAATAAAT
# TF - UgpR: CTN_0791
>CTN_0791(ugpR) Score=6.2 Pos=-30 [Thermotoga neapolitana DSM 4359]
TTATGTAAGCGCTTACAGGA
# TF - XylR: CTN_0581
>CTN_0623(xynB) Score=5.8 Pos=-190 [Thermotoga neapolitana DSM 4359]
ATTTTTTCCTTTCGGGAAATATT
>CTN_0622(xloE) Score=5.8 Pos=-52 [Thermotoga neapolitana DSM 4359]
AATATTTCCCGAAAGGAAAAAAT
>CTN_0632(xynA1) Score=5.3 Pos=-41 [Thermotoga neapolitana DSM 4359]
ATTTTTTCTCCGTAAGAAATAAC
>CTN_1302(xynA3) Score=5.2 Pos=-41 [Thermotoga neapolitana DSM 4359]
GTTTTTTCCTTTCTGAAAATAAC
>CTN_0633 Score=5.3 Pos=-245 [Thermotoga neapolitana DSM 4359]
GTTATTTCTTACGGAGAAAAAAT
>CTN_0379(xtpN) Score=4.3 Pos=-65 [Thermotoga neapolitana DSM 4359]
AaaATTgtTTGgtAgaAAAaAAg
>CTN_0581(xylR) Score=5.1 Pos=-34 [Thermotoga neapolitana DSM 4359]
ATTAATTCCTGCATATAATTAAT
>CTN_0720(xylA) Score=5 Pos=-38 [Thermotoga neapolitana DSM 4359]
ATAATTGATTGATAGAAAAAATT
# TF - Zur: CTN_0567
>CTN_0567(zur) Score=7 Pos=-31 [Thermotoga neapolitana DSM 4359]
TTGCAAATGCTTTGCATTTGCAG
# TF - AraR: CTN_0410
>CTN_0409(araA) Score=6.2 Pos=-62 [Thermotoga neapolitana DSM 4359]
ATAAAGGTACGTACTTTTGT
>CTN_0409(araA) Score=4.7 Pos=-165 [Thermotoga neapolitana DSM 4359]
ATATCGGTACGTACCAGTTG
>CTN_0408(araE) Score=6.2 Pos=-136 [Thermotoga neapolitana DSM 4359]
ACAAAAGTACGTACCTTTAT
>CTN_0408(araE) Score=4.7 Pos=-33 [Thermotoga neapolitana DSM 4359]
CAACTGGTACGTACCGATAT
# TF - Fur: CTN_0966
>CTN_0644(feoA) Score=6.4 Pos=-33 [Thermotoga neapolitana DSM 4359]
GTTGAGAATGATTCTCAAA
>CTN_0311(bcp) Score=6 Pos=-1 [Thermotoga neapolitana DSM 4359]
ATTGAGAATTAGTTTCAAC
# TF - GalR: CTN_1371
>CTN_1367(ganE) Score=5.6 Pos=-62 [Thermotoga neapolitana DSM 4359]
ACGGTAACGTTTACGT
>CTN_1372(galX) Score=5 Pos=-63 [Thermotoga neapolitana DSM 4359]
CTGTGAACGTTCACGG
>CTN_1375(ltpE) Score=4.9 Pos=8 [Thermotoga neapolitana DSM 4359]
ACATAAACGTTCACGG
# TF - ZnuR: CTN_0563
>CTN_0567(zur) Score=6.3 Pos=-152 [Thermotoga neapolitana DSM 4359]
TATACCATAATTCGGCATA
# TF - ArgR: CTN_0302
>CTN_1184(argG) Score=6.7 Pos=-37 [Thermotoga neapolitana DSM 4359]
ATAATTATGCTATCAAGAA
>CTN_0302(argR) Score=5.8 Pos=-41 [Thermotoga neapolitana DSM 4359]
ATATTTATGCTGTATAATT
# TF - UgtR: CTN_1344
>CTN_1337(ugtE) Score=6.1 Pos=-50 [Thermotoga neapolitana DSM 4359]
GTAGAAAATTTTCTtT
# TF - PhoB: CTN_1314
>CTN_1309(pstS) Score=7.7 Pos=-81 [Thermotoga neapolitana DSM 4359]
CTTAACA---CTTAACA
# TF - UctR: CTN_0342
>CTN_0346(uctP) Score=6.2 Pos=-31 [Thermotoga neapolitana DSM 4359]
GAAAAAAATATTTTTACA
# TF - TM0766: CTN_1811
>CTN_1811(TM0766) Score=7.2 Pos=66 [Thermotoga neapolitana DSM 4359]
gTGTAATAgTAcAATATTACAG
# TF - Rex1: CTN_1066
>CTN_1072(TM1420) Score=5.9 Pos=-101 [Thermotoga neapolitana DSM 4359]
TTGTGAATACAGTAACAA
# RNA - FMN
>CTN_0760(ribD) Score=112.3 Pos=-60 [Thermotoga neapolitana DSM 4359]
AGAGTGTAGACCATCAGGGACCCGAGAGGGTCCCTTTTCTCTTTAAAAAGGGGTGAAAATGTGTACGAAAGGTTCATGAAAAGAGCAATAGAACTTGCAAAGAAAGGGCTTGGAAGAGTGAAT
# RNA - TPP
>CTN_1791(thi4) Score=76 Pos=-163 [Thermotoga neapolitana DSM 4359]
ACCCTTCCCCAGGGGGAGCTCCTATTCCGGGGCTGAGAGGAGGACGGAAGTCCTCGACCCCTAGAACCTGATCCGGGTAATACCGGCGGAGGGAATGGGGAAGGGAAAAGAA
# RNA - Cobalamin
>CTN_0612(btuF) Score=105.3 Pos=-219 [Thermotoga neapolitana DSM 4359]
AACCTCCCTCACCGTGAGGTACCCTTTTGGGTTCAAAGGGGAAGCCGGTGAGAATCCGGCGCGGGGCCGCCACCGTGACCGGGGACGAACCCCGCACGATGCCACTGGGGCTTTTGCCCTGGGAAGGCGCGGGGAGTAGGATGATCCGGAAGCCGGGAAACCCGCCCGCGGTGAAGGGAACCACCT
# RNA - Lysine
>CTN_0970(asd) Score=88.9 Pos=-267 [Thermotoga neapolitana DSM 4359]
GACCCGACGGAGGAGCGCCCGAGATGAGTAGGCTGTCCCTTCAGGGGAGGAATCGGGGGCAGCTGAAAGGCGAGGGCGCCGAAGGGTATAGGGTTCCTCCCGCCCTATACGCCTGGGGGTATGGGGAACACCCATGCCACTGTCACGGAGGTCTCTCCGTGGAGAGCCGATCGGGTCTG
# RNA - L10_leader
>CTN_0217(rplJ) Score=32.3 Pos=-137 [Thermotoga neapolitana DSM 4359]
AACAAATAGCCGAGCGACGCCGTAGATGGCAGGTCCCTTTCCGGGTTAAACATCCTGCCGGAGGCGTCCCAAAAGGGCACTAAGGCCTTTTTGTGGACCCTCCGGGGTCCACAAAATTTTTTTGGGAGGT
# RNA - L20_leader
>CTN_0869(infC) Score=44.2 Pos=-115 [Thermotoga neapolitana DSM 4359]
TAAAAGCAAGTGGAGGCCAGCCCGGCTTCCCACCCTGGAGCAGAAGGCTACCAGGGTAAATATCCCTGAGAACATCAGCTTCAAAGGGAAGCGGGCTTTTTGCCCGCTATTTTTTGTGAAG
# RNA - L21_leader
>CTN_1035(rplU) Score=19.3 Pos=-7 [Thermotoga neapolitana DSM 4359]
GCTTGAAGTGCGTCGAAAATCCCTTTTTGGGTACGTACTTCAGCGCC
# TF - PuuR: CTN_0001
>CTN_0001(puuR) Score=4.8 Pos=-22 [Thermotoga neapolitana DSM 4359]
ATGTCTGTGATACTGAACAA
>CTN_0001(puuR) Score=6.4 Pos=0 [Thermotoga neapolitana DSM 4359]
TTGTCAACTATAGTGGTCAA