# TF - TyrR: HD1229
>HD1229(tyrR) Score=6.2 Pos=-80 [Haemophilus ducreyi 35000HP]
TTGTAAACAAAAGTTTCCAA
>HD0444(aroF) Score=4.9 Pos=-32 [Haemophilus ducreyi 35000HP]
ATGTATCAAAAATTTTACAC
# TF - ArgR: HD0262
>HD0811(artP) Score=4.7 Pos=-109 [Haemophilus ducreyi 35000HP]
ATTGATTATTTATGCAAC
>HD0811(artP) Score=5 Pos=-62 [Haemophilus ducreyi 35000HP]
CTTGCATAATTATGCATT
>HD0811(artP) Score=4.4 Pos=-41 [Haemophilus ducreyi 35000HP]
ATTTAATATAAATTCAGT
>HD0568(arcD) Score=4.1 Pos=-126 [Haemophilus ducreyi 35000HP]
ATATAGTTTTTATTCATT
>HD0568(arcD) Score=4.2 Pos=-50 [Haemophilus ducreyi 35000HP]
TATGATAAATTATGCACT
>HD1033(argH) Score=5.3 Pos=-78 [Haemophilus ducreyi 35000HP]
TTTGCATATTTATGCAAA
>HD1033(argH) Score=4.4 Pos=-99 [Haemophilus ducreyi 35000HP]
CTTAAATAATTATTGAAA
>HD1384(argA) Score=4.4 Pos=-76 [Haemophilus ducreyi 35000HP]
TGTGAATATTTTTGCAAA
# TF - FabR: HD0698
>HD0612(fabB) Score=6.3 Pos=-65 [Haemophilus ducreyi 35000HP]
AGCGAACAAGTGTAAGCT
>HD0181(fabA) Score=5.1 Pos=-98 [Haemophilus ducreyi 35000HP]
AGCTAACAGTTGTTAGCT
# TF - NrdR: HD1374
>HD0394(nrdG) Score=4.9 Pos=-30 [Haemophilus ducreyi 35000HP]
TAACTATATATAGTAA
>HD0394(nrdG) Score=5.7 Pos=-62 [Haemophilus ducreyi 35000HP]
ACACAATATATTGTGT
>HD1731(nrdA) Score=4.6 Pos=-78 [Haemophilus ducreyi 35000HP]
AAACCATATCTTGTAC
>HD1731(nrdA) Score=5.1 Pos=-47 [Haemophilus ducreyi 35000HP]
CCACAACATATAGTGG
# TF - FadR: HD1727
>HD0181(fabA) Score=4.8 Pos=-116 [Haemophilus ducreyi 35000HP]
AACTGATCGGATTTGCT
>HD1078(fadL) Score=5.6 Pos=-156 [Haemophilus ducreyi 35000HP]
GACTGGTCTGAACTCTA
# TF - IscR: HD1080
>HD0378(nfuA) Score=5.6 Pos=-47 [Haemophilus ducreyi 35000HP]
ATGGCTGATAATTTTAGTCAAGTTA
>HD1080(iscR) Score=6.2 Pos=-75 [Haemophilus ducreyi 35000HP]
ATGCTTGACTAAAATAGTCGAGTAT
# TF - SiaR: HD1380
>HD1852(nanE) Score=4.3 Pos=-125 [Haemophilus ducreyi 35000HP]
ACAGAAAATTCACTTCTTT
>HD1379(yhcH) Score=4.4 Pos=-86 [Haemophilus ducreyi 35000HP]
ATTGGAGTAGGTTTTCATT
# TF - Fur: HD0367
>HD0037(hutW) Score=4.3 Pos=-80 [Haemophilus ducreyi 35000HP]
GTTGATAAAAATCAATATC
>HD0329(exbB) Score=4.3 Pos=-125 [Haemophilus ducreyi 35000HP]
GAAAATAACAATTATTGTC
>HD0693(tyrS) Score=5.3 Pos=-178 [Haemophilus ducreyi 35000HP]
GAGAATCATTATCATTAAC
>HD0693(tyrS) Score=4.4 Pos=-184 [Haemophilus ducreyi 35000HP]
TGCATTGAGAATCATTATC
>HD2025(hgp) Score=4.3 Pos=-73 [Haemophilus ducreyi 35000HP]
GTTTTTGATAATCGTTTTT
>HD2025(hgp) Score=4.3 Pos=-67 [Haemophilus ducreyi 35000HP]
GATAATCGTTTTTATTAAA
>HD0388(hemR) Score=5.1 Pos=-74 [Haemophilus ducreyi 35000HP]
AAAAATGATAATTATTACC
>HD0388(hemR) Score=4.6 Pos=-68 [Haemophilus ducreyi 35000HP]
GATAATTATTACCAATTTA
>HD1816(sitA) Score=4.3 Pos=-57 [Haemophilus ducreyi 35000HP]
GCGAATTATTCTCAATAAC
>HD1285(ssb) Score=4.6 Pos=-126 [Haemophilus ducreyi 35000HP]
AAAAATTTTAATTATTATC
# TF - PurR: HD1641
>HD1424(purE) Score=4.6 Pos=-69 [Haemophilus ducreyi 35000HP]
AAACAATCGTTTGTTT
>HD0561(purM) Score=5.3 Pos=-72 [Haemophilus ducreyi 35000HP]
CCGCAACCGTTTGCTT
>HD1811(xanP) Score=5.5 Pos=-67 [Haemophilus ducreyi 35000HP]
GAGCAAACGATTGCTT
>HD1703(purH) Score=6.2 Pos=-179 [Haemophilus ducreyi 35000HP]
AAGCAAACGTTTGCGT
>HD1208(cvpA) Score=6.1 Pos=-55 [Haemophilus ducreyi 35000HP]
ACGCAAACGTTTTCTT
# TF - LexA: HD0545
>HD0815(recN) Score=5 Pos=-42 [Haemophilus ducreyi 35000HP]
TACTATATATCTATACAGAA
>HD0410(recA) Score=5.3 Pos=-84 [Haemophilus ducreyi 35000HP]
AACTGTATAAGTAAACACTA
>HD1063(impA) Score=5.2 Pos=-61 [Haemophilus ducreyi 35000HP]
TACTGTTTTTTTAATCAGTA
>HD0545(lexA) Score=5.5 Pos=-28 [Haemophilus ducreyi 35000HP]
TTCTGTATATAAAGACAGTG
>HD0545(lexA) Score=5.3 Pos=-50 [Haemophilus ducreyi 35000HP]
TACTGTATATAATAACACAA
>HD1758(ruvA) Score=5 Pos=-106 [Haemophilus ducreyi 35000HP]
GCCTGTTTTTTTATACAGTT
>HD1121(radA) Score=4.6 Pos=-65 [Haemophilus ducreyi 35000HP]
GCCTGTGTATTTAGTCAGTA
>HD1285(ssb) Score=4.9 Pos=-96 [Haemophilus ducreyi 35000HP]
AGCTGTACAAAATATCAGTT
>HD0815(recN) Score=5.8 Pos=-63 [Haemophilus ducreyi 35000HP]
TACTGTTTAAAAAAACAGTA
>HD1032(uvrD) Score=4.8 Pos=-39 [Haemophilus ducreyi 35000HP]
CACTGTATAAATGCACATTG
>HD1063(impA) Score=4.8 Pos=-36 [Haemophilus ducreyi 35000HP]
GCCTGTATAAATAACCATAT
>HD1063(impA) Score=5.2 Pos=-100 [Haemophilus ducreyi 35000HP]
TACTGTATATTTTTACAAAA
# RNA - Lysine
>HD1375(lysC) Score=51.6 Pos=-296 [Haemophilus ducreyi 35000HP]
TCATTGCGGGAGAGGCGCAACACTCAGGCAATTTAATCTTAGGCAACTAGGGCCGTTTGAGGATTAAATGATGGGAGTGGTTTGCCGAGGTGTGAATTCACTAGACTGGAATGAACATCGGCTGAGTCAGGTTGAATCCTATCAGCTGTCATTTAAAACGCATTAGCTGTTTAAATGGAGTGCTCTGATTAAT
>HD1227(lysW) Score=135.1 Pos=-102 [Haemophilus ducreyi 35000HP]
CAAATTGTAGAGGTGCAAATCCGATAAGTATTTCTTCTGAGTGGAAAGCGATGAAGGGGAAGGAAAGGCGTATTTGCCGAAATCAATTAAGCGTCATCTTAGTTGGTTGGGGTCGTTGCCGAAAGGGACGACACTGTCGTAATTCAATATTACGGAGTGCTACTATTAGGGT
# RNA - PreQ1
>HD0558(queC) Score=18.2 Pos=-65 [Haemophilus ducreyi 35000HP]
TCGTGGTTCGAAAACCTCCCATGCTTAAAA
# RNA - FMN
>HD1161(ribD) Score=108.9 Pos=-295 [Haemophilus ducreyi 35000HP]
TTAATCTTCAGGGCAGGGTGAAATTCCCGATCGGTGGTAAAGTCCGCGAGCCGAACTTCGATTAACATCAAGTTTAGCAGGAACTAGTGAAATTCTAGTACCGACAGTATAGTCTGGATGGAAGAAGAGCAGAAA
# RNA - S15
>HD1738(rpsO) Score=85.1 Pos=-63 [Haemophilus ducreyi 35000HP]
GTCATAGCTGAGTTAGAGATCGGCTATTGATGTATTATCAACCCTGAAAAAAAGGATATAAATATGTCTCTAAGCGTAGAAGCAAAAGCAAAGATCGTGTCTGAATTTGGCCGTGATGCAAA
# RNA - MOCO_RNA_motif
>HD1394(bisC) Score=63.1 Pos=-190 [Haemophilus ducreyi 35000HP]
AACTTAAACGATACCGAGCTTGTTAGCCTAAGTCTATTGATAAGGCAGCAAAGCCTGCAATATAAGCGGTCGAGTTGATGAAATATTTAGCTATTAATCGCTTATTTTGCACAGGATAGTAAAGAAATGCACTATCCTCTCATATTCAGAAAGGTGTCAAATTTTCATTCACTT
>HD1392(moaA) Score=40.6 Pos=-107 [Haemophilus ducreyi 35000HP]
AATTATTTTTAGACTCCGAGCCTACTTTCCTAAGTCTTATTAAATTTGAGCAAATCATAAAGGATTTTGAGAAATCAAACCTCCTCTCGTATTTAGAAAGGTGTCCTATGCAAGCCATC
# RNA - Glycine
>HD0460 Score=53.2 Pos=-36 [Haemophilus ducreyi 35000HP]
CCTTGGAGAGATCCACTCTGTACTATAGTACAGAAAATGGACGCCGAAGGCGCAAATATAAAGCAAATTTATGTGAAACGCTCAGGCAAAAGGACAGGGGAG
>HD0460 Score=29.5 Pos=-130 [Haemophilus ducreyi 35000HP]
TGAAGGTGGCTGGAGAAGAGTTTAGGCTCTACCGACGAGGTAAAATCTTTCAGGTGCAATAGTTTAACTATGTGAGGACAGTTACTGGACGAA
# RNA - TPP
>HD0601(thiB) Score=62.6 Pos=-154 [Haemophilus ducreyi 35000HP]
TGTTCTCATTGGGGTGCTGAAAATAAGCTGAGAAATACCCATAGAACCTGATCTGATTCGTATCAGCGTAGGGATTTGAGGCCATTTCTACTAC
# TF - NarP: HD0305
>HD0786(ccmA) Score=4.5 Pos=-85 [Haemophilus ducreyi 35000HP]
TACCTCTAAAGAAGTA
>HD0791(ccmE) Score=4.8 Pos=-133 [Haemophilus ducreyi 35000HP]
TACTTCTTTATAGGTA
>HD0791(ccmE) Score=4.1 Pos=-43 [Haemophilus ducreyi 35000HP]
TAATTTTTTTGTGTGA
>HD0278(arcA) Score=4.1 Pos=-110 [Haemophilus ducreyi 35000HP]
TAACCCTTTCTAGTGG
>HD0991(focA) Score=4.2 Pos=-95 [Haemophilus ducreyi 35000HP]
TACCTCAATTTAATTG
>HD0237(dcuB) Score=4.5 Pos=-96 [Haemophilus ducreyi 35000HP]
TACCTCTCTTGAGGTA
>HD0379(nqrA) Score=4.5 Pos=-307 [Haemophilus ducreyi 35000HP]
TACTACTTTTGAGTTA
>HD1782(cydA) Score=4.2 Pos=-153 [Haemophilus ducreyi 35000HP]
TTCTTATTTAGGGTTA
>HD1393(torY) Score=4.4 Pos=-143 [Haemophilus ducreyi 35000HP]
TACCTAATTTGCGTTA
>HD0264(mdh) Score=4.4 Pos=-25 [Haemophilus ducreyi 35000HP]
TAACCATTTATGATTA
>HD0072(napF) Score=4.3 Pos=-80 [Haemophilus ducreyi 35000HP]
TACCTAAATGGAGTGA
# TF - MetJ: HD0675
>HD0569(metK) Score=6.2 Pos=-162 [Haemophilus ducreyi 35000HP]
AGACGTCTAGATGTAC
>HD1098(metN) Score=7.4 Pos=-56 [Haemophilus ducreyi 35000HP]
AGCATTCTAGACGTCT
# TF - PdxR: HD1595
>HD1593(pdxS) Score=12.4 Pos=-100 [Haemophilus ducreyi 35000HP]
TCTGACCT-(16)-ATTGATAC-(8)-ATATCTGT