# TF - TrpR: VP0553
>VP2337(COG0733) Score=6.3 Pos=-41 [Vibrio parahaemolyticus RIMD 2210633]
TGTACTAGTTAGCTAGTTCA
>VP1956(trpE) Score=6.5 Pos=-352 [Vibrio parahaemolyticus RIMD 2210633]
CGCACTAGTTAACTAGTACG
>VPA0585(trpB2) Score=6.1 Pos=-116 [Vibrio parahaemolyticus RIMD 2210633]
CGTACTATTTAACTAGTTCA
# TF - FabR: VP2941
>VPA0603(COG2030) Score=4.5 Pos=-99 [Vibrio parahaemolyticus RIMD 2210633]
AGGATACATGTGTTCGCC
>VP2213(fadL) Score=4.8 Pos=-183 [Vibrio parahaemolyticus RIMD 2210633]
ACCTCACAGGTGTTCGCT
>VPA0707(OLE1) Score=5.5 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
GACTTACACGTGTTCGCT
>VPA0707(OLE1) Score=5.4 Pos=-37 [Vibrio parahaemolyticus RIMD 2210633]
AGCGAACAGTTGTTAGCT
>VP0351(lcfH) Score=4.8 Pos=-58 [Vibrio parahaemolyticus RIMD 2210633]
TGAGTACACTTGTTCGCT
>VP0351(lcfH) Score=5 Pos=-35 [Vibrio parahaemolyticus RIMD 2210633]
AGCTTACGCCTGTAAGCC
>VP3048(hyIII) Score=6.3 Pos=-65 [Vibrio parahaemolyticus RIMD 2210633]
AGCTTACACGTGTACGCT
>VP1591(fabA) Score=5.7 Pos=-52 [Vibrio parahaemolyticus RIMD 2210633]
AGCGTACACGTGTTCACT
# TF - NsrR: VP2808
>VP2390(nnrS) Score=5.7 Pos=-83 [Vibrio parahaemolyticus RIMD 2210633]
CATGTATTTTTTATGCATG
>VP2809(hmp) Score=4.8 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
GATACATTTGAGATACAAC
>VP2809(hmp) Score=5.4 Pos=-38 [Vibrio parahaemolyticus RIMD 2210633]
CATGCATTACAAATACAAC
>VP2808(nsrR) Score=5.4 Pos=-139 [Vibrio parahaemolyticus RIMD 2210633]
GTTGTATTTGTAATGCATG
>VP2808(nsrR) Score=4.8 Pos=-114 [Vibrio parahaemolyticus RIMD 2210633]
GTTGTATCTCAAATGTATC
# TF - BirA: VP2931
>VP1113(bioB) Score=7.8 Pos=-90 [Vibrio parahaemolyticus RIMD 2210633]
ATGTAAACT----------------TGTTGACAG
>VP1112(bioA) Score=7.8 Pos=-73 [Vibrio parahaemolyticus RIMD 2210633]
CTGTCAACA----------------AGTTTACAT
# TF - HexR: VP1236
>VP2157(gapA) Score=5.1 Pos=-55 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATTTTACTACC
>VP2829(gpmM) Score=5.2 Pos=-91 [Vibrio parahaemolyticus RIMD 2210633]
TGTAGTAAAATTACG
>VP2761(ppc) Score=4.9 Pos=-174 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATTAATTTTCA
>VP2761(ppc) Score=4.8 Pos=-28 [Vibrio parahaemolyticus RIMD 2210633]
TGTAGTTTTTTTACG
>VP1070(ygaW) Score=4.3 Pos=-150 [Vibrio parahaemolyticus RIMD 2210633]
GGTTATTAATTTACA
>VPA0987(nirB) Score=4.9 Pos=-84 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATTGATTTACA
>VP0671(pepD) Score=4.6 Pos=-329 [Vibrio parahaemolyticus RIMD 2210633]
AGAAATTTAATTACA
>VP0671(pepD) Score=5.7 Pos=-255 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATTAAATTACA
>VP0583(aceB) Score=5.5 Pos=-305 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATTAAATTACG
>VP0370(mtlA) Score=4.5 Pos=-211 [Vibrio parahaemolyticus RIMD 2210633]
TGTTATTAAGTTACA
>VPA0922(pntA) Score=4.6 Pos=-227 [Vibrio parahaemolyticus RIMD 2210633]
AGTATTTAAATTACA
>VP2731(pgi) Score=4.7 Pos=-138 [Vibrio parahaemolyticus RIMD 2210633]
TGAAAAAAAATTACA
>VP0992(pflA) Score=4.9 Pos=-45 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATAAAATAACA
>VPA1645(glgX) Score=5.1 Pos=-114 [Vibrio parahaemolyticus RIMD 2210633]
AGTAATTAAATTACA
>VP0239(tpiA) Score=4.4 Pos=-55 [Vibrio parahaemolyticus RIMD 2210633]
CGTAGATTTTTTACA
>VP0497(grcA) Score=5 Pos=-249 [Vibrio parahaemolyticus RIMD 2210633]
TGTAGTAAATTTACA
>VP2046(ptsG) Score=4.5 Pos=-322 [Vibrio parahaemolyticus RIMD 2210633]
TGTAATTTTGTTACT
>VP2046(ptsG) Score=4.6 Pos=-291 [Vibrio parahaemolyticus RIMD 2210633]
TGTATTTTATTTACG
>VP0484(gltB) Score=5.2 Pos=-308 [Vibrio parahaemolyticus RIMD 2210633]
TGTAACTAAATTACA
# TF - ArgR: VP0324
>VPA0636(artP) Score=3.9 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
ATTGCATAAAAACTCCTT
>VP2759(argC) Score=4.8 Pos=-78 [Vibrio parahaemolyticus RIMD 2210633]
AATGAATAAAAAATCAAA
>VP2759(argC) Score=4.1 Pos=-99 [Vibrio parahaemolyticus RIMD 2210633]
AACACATATTAACTCATA
>VP2756(argH) Score=4.2 Pos=-155 [Vibrio parahaemolyticus RIMD 2210633]
GGTGAATATATATGTAAA
>VP2756(argH) Score=4.3 Pos=-134 [Vibrio parahaemolyticus RIMD 2210633]
ATTGAATTTATACTTTAT
>VPA0636(artP) Score=4.5 Pos=-84 [Vibrio parahaemolyticus RIMD 2210633]
ATTAAATTTTTATACATT
>VP2652(arcA) Score=4.4 Pos=-193 [Vibrio parahaemolyticus RIMD 2210633]
AAAGAATAAAAACGCATT
>VP2652(arcA) Score=4 Pos=-251 [Vibrio parahaemolyticus RIMD 2210633]
TTAGAATAGAAATGCACA
>VP2760(argE) Score=3.8 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
TATGAGTTAATATGTGTT
>VP2760(argE) Score=4.5 Pos=-84 [Vibrio parahaemolyticus RIMD 2210633]
TTTGATTTTTTATTCATT
>VP2797(argD) Score=4 Pos=-115 [Vibrio parahaemolyticus RIMD 2210633]
ATTAAATGTAAATACAAT
>VP2797(argD) Score=4.2 Pos=-195 [Vibrio parahaemolyticus RIMD 2210633]
GATGCATAAATACTCATA
>VP2371(argA) Score=4.3 Pos=-31 [Vibrio parahaemolyticus RIMD 2210633]
TAAGCATAAATAAACACA
>VP2371(argA) Score=4.4 Pos=-52 [Vibrio parahaemolyticus RIMD 2210633]
ATTGAATAAAAAGACATT
>VP2653(argF) Score=3.4 Pos=-53 [Vibrio parahaemolyticus RIMD 2210633]
TATATGTTTTAATACAAT
>VP2653(argF) Score=3.9 Pos=-61 [Vibrio parahaemolyticus RIMD 2210633]
GAAGCATTTATATGTTTT
>VP2653(argF) Score=4.4 Pos=-82 [Vibrio parahaemolyticus RIMD 2210633]
TTAAAATAATTATTCACA
# TF - NrtR: VPA0308
>VPA0308(nrtR) Score=6.2 Pos=-214 [Vibrio parahaemolyticus RIMD 2210633]
TTTGTCAACTTTTGTTACTAA
>VPA0309(pncB) Score=6.2 Pos=-106 [Vibrio parahaemolyticus RIMD 2210633]
TTAGTAACAAAAGTTGACAAA
# TF - NrdR: VP0678
>VPA0941(nrdD) Score=4.6 Pos=-60 [Vibrio parahaemolyticus RIMD 2210633]
TAACCCCATATAGTGT
>VPA0941(nrdD) Score=5.6 Pos=-91 [Vibrio parahaemolyticus RIMD 2210633]
CCACAATATATTGTGT
>VP1934(nrdA) Score=5.6 Pos=-133 [Vibrio parahaemolyticus RIMD 2210633]
CCCCTATATGTTGTGT
>VP1934(nrdA) Score=4.2 Pos=-112 [Vibrio parahaemolyticus RIMD 2210633]
CTACAATATATAGATA
# TF - Zur: VP2729
>VP2331(rpmE2) Score=6.9 Pos=-41 [Vibrio parahaemolyticus RIMD 2210633]
AAAATGTTATAACATAACAATTT
>VPA1308(omr) Score=6.2 Pos=-62 [Vibrio parahaemolyticus RIMD 2210633]
TAATTGTTATATTATAACAACTT
>VPA1308(omr) Score=6.3 Pos=-33 [Vibrio parahaemolyticus RIMD 2210633]
CATATGTTATAACATAACAATAA
>VP0303(VC2551) Score=5.3 Pos=-43 [Vibrio parahaemolyticus RIMD 2210633]
TGAGTGTTATATTATAACACCCG
>VP0852(znuC) Score=6.7 Pos=-46 [Vibrio parahaemolyticus RIMD 2210633]
ATAATGTTACATTATAACATTAT
>VP0853(znuA) Score=6.8 Pos=-55 [Vibrio parahaemolyticus RIMD 2210633]
ATAATGTTATAATGTAACATTAT
>VP1921(ribA) Score=6.2 Pos=-207 [Vibrio parahaemolyticus RIMD 2210633]
AAATTGTTATACTATAACAATTT
>VP0303(VC2551) Score=5.3 Pos=-43 [Vibrio parahaemolyticus RIMD 2210633]
TGAGTGTTATATTATAACACCCG
# TF - PdhR: VP2520
>VP2520(pdhR) Score=6.3 Pos=-182 [Vibrio parahaemolyticus RIMD 2210633]
ATTGGTCAGACCAAT
>VP2520(pdhR) Score=6.1 Pos=-44 [Vibrio parahaemolyticus RIMD 2210633]
ATTGGTATTACCAAT
# TF - FadR: VP2071
>VP1591(fabA) Score=4.2 Pos=-85 [Vibrio parahaemolyticus RIMD 2210633]
AACTGGTTTGTCTAGTA
>VP1591(fabA) Score=3.4 Pos=-70 [Vibrio parahaemolyticus RIMD 2210633]
TACTGATCGGAGTTGTT
>VP0030(fadB) Score=5.2 Pos=-115 [Vibrio parahaemolyticus RIMD 2210633]
TACTGGTCAAACCAGAA
>VP2947(plsB) Score=4.6 Pos=-158 [Vibrio parahaemolyticus RIMD 2210633]
AAAAGGTTTGACCAGTT
>VP2289(fadE2) Score=5.9 Pos=-67 [Vibrio parahaemolyticus RIMD 2210633]
AACTGGTTAGACCTCTT
>VP0834(VC2105) Score=4.5 Pos=-57 [Vibrio parahaemolyticus RIMD 2210633]
TACAGATCTGACCAGTT
>VP2151(fadH) Score=4.3 Pos=-48 [Vibrio parahaemolyticus RIMD 2210633]
GTCTGGTCAGACCATGA
>VP2209(fadI) Score=5.7 Pos=-34 [Vibrio parahaemolyticus RIMD 2210633]
ATCAGGTCAGACCTCTT
# TF - PrpR: VP1649
>VP1649(prpR) Score=5.4 Pos=-83 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTCGACACT
>VP1649(prpR) Score=4.7 Pos=-40 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTAGACACT
>VP1649(prpR) Score=5.4 Pos=-196 [Vibrio parahaemolyticus RIMD 2210633]
GTTGTCGACAAT
>VP1649(prpR) Score=5.8 Pos=-102 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTCGACAAT
# TF - HutC: VP1277
>VP1276(hutI) Score=6 Pos=-48 [Vibrio parahaemolyticus RIMD 2210633]
TTATTTGTATATACATTTAA
>VP1277(hutC) Score=4.6 Pos=-32 [Vibrio parahaemolyticus RIMD 2210633]
GTATTTGTATAGTCAATTTA
# TF - HypR: VP1328
>VP1328(hypR) Score=4.8 Pos=-36 [Vibrio parahaemolyticus RIMD 2210633]
ATTGGATACAAT
>VP1331(hypO) Score=5.3 Pos=-44 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTATACAAT
>VP1335(hypD) Score=5 Pos=-34 [Vibrio parahaemolyticus RIMD 2210633]
ATTGCATACAAT
>VP1330(hypE) Score=5.3 Pos=-78 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTATACAAT
>VP1332(COG687 (PotD)) Score=4.9 Pos=-104 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTATAAAAT
# TF - IscR: VP0595
>VP0146(nfuA) Score=4.8 Pos=-30 [Vibrio parahaemolyticus RIMD 2210633]
GTAACCTACAAAATTACTCAGGTAT
>VP0595(iscR) Score=6.5 Pos=-93 [Vibrio parahaemolyticus RIMD 2210633]
ATACCTGAGTAATTTAGTCAAATAA
>VP0595(iscR) Score=6.7 Pos=-68 [Vibrio parahaemolyticus RIMD 2210633]
ATACTTGACCATTTTACTCGGGTAT
>VP2474(erpA) Score=6.7 Pos=-103 [Vibrio parahaemolyticus RIMD 2210633]
ATACTTGAACGAGTTTGTCAGGTAT
# TF - NagC: VP0828
>VP0497(grcA) Score=5.1 Pos=-216 [Vibrio parahaemolyticus RIMD 2210633]
TATTTTTTATATTATCAAATAAA
>VP2157(gapA) Score=4.7 Pos=-39 [Vibrio parahaemolyticus RIMD 2210633]
GTTATCTTTAATCAGAAATTAAG
>VP1241(tfoX1) Score=4.7 Pos=-151 [Vibrio parahaemolyticus RIMD 2210633]
CTTATTTTTCAACGTTAAGTATG
>VP0802(ybfM) Score=5.3 Pos=-209 [Vibrio parahaemolyticus RIMD 2210633]
TATTTTTTTAGAAAAAAAATAAG
>VP1023(glgC) Score=5.3 Pos=-192 [Vibrio parahaemolyticus RIMD 2210633]
TTTATTTAGCGTCAAAAAATAAG
>VP3067(glmU) Score=4.8 Pos=-97 [Vibrio parahaemolyticus RIMD 2210633]
ATTATTTTTAGTTGGAAATTTAC
>VP0829(nagA) Score=5.5 Pos=-313 [Vibrio parahaemolyticus RIMD 2210633]
CTTATTTTATTATACAAAAAAAT
>VPA0038(nagB) Score=4.6 Pos=-231 [Vibrio parahaemolyticus RIMD 2210633]
CTTAATTCAAGCCATAAATTTTA
>VPA0038(nagB) Score=5.4 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
CTTATTTTATAATGCGAATTAAT
>VPA1651(mcp2) Score=5.2 Pos=-185 [Vibrio parahaemolyticus RIMD 2210633]
TTTATTTTGAGCAGTAAAATATA
>VP0831(nagE1) Score=5.5 Pos=-199 [Vibrio parahaemolyticus RIMD 2210633]
ATTTTTTTGTATAATAAAATAAG
>VP0831(nagE1) Score=5 Pos=-105 [Vibrio parahaemolyticus RIMD 2210633]
TTTAATTTGCGGAGCAAAATTAA
>VP0755(hex) Score=5.4 Pos=-122 [Vibrio parahaemolyticus RIMD 2210633]
TTTATTTTACGCTTAGAAATAAC
>VP0795(ptsH) Score=5.3 Pos=-208 [Vibrio parahaemolyticus RIMD 2210633]
TTTATTTCTAGCTTCAAAATAAA
>VP2562(pyrG) Score=5.1 Pos=-132 [Vibrio parahaemolyticus RIMD 2210633]
TTTGATTTGAAGCAAAAAATAAA
>VP2046(ptsG) Score=5.1 Pos=-321 [Vibrio parahaemolyticus RIMD 2210633]
GTAATTTTGTTACTAAAAATAAC
>VP2046(ptsG) Score=5 Pos=-287 [Vibrio parahaemolyticus RIMD 2210633]
TTTTATTTACGCCTTAAAATTAA
>VP2600(pgk) Score=5.1 Pos=-128 [Vibrio parahaemolyticus RIMD 2210633]
TTTATTTCAAGCCTTGAAATAAA
>VPA0055(chiA) Score=5.1 Pos=-140 [Vibrio parahaemolyticus RIMD 2210633]
AATTTTTTTTGACGAAAAAAAAC
>VP0619(chi) Score=4.3 Pos=-149 [Vibrio parahaemolyticus RIMD 2210633]
CATTTTTCTTGTGACAAAATGTG
>VP1029(VP1029) Score=5.3 Pos=-269 [Vibrio parahaemolyticus RIMD 2210633]
CTTTTTTTTATTAAAAAAATAAC
>VP2629(mcp) Score=5.1 Pos=-148 [Vibrio parahaemolyticus RIMD 2210633]
CTTATTTCACGCTAAAAATTTAA
# TF - NtrC: VP0118
>VP0119(ntrB) Score=5.6 Pos=-49 [Vibrio parahaemolyticus RIMD 2210633]
TGCACCATTATTGTGCA
>VP2493(glnK) Score=5.5 Pos=-137 [Vibrio parahaemolyticus RIMD 2210633]
CGCACCATATCGGTGCG
>VP1523(amtB2) Score=5.3 Pos=-182 [Vibrio parahaemolyticus RIMD 2210633]
CGCATTATATTGGTGCA
>VP0121(glnA) Score=5.3 Pos=-229 [Vibrio parahaemolyticus RIMD 2210633]
CGCACCACTTTAGTGCA
# TF - Fur: VP0833
>VPA0882 Score=5.7 Pos=-80 [Vibrio parahaemolyticus RIMD 2210633]
TAATGATAGTAATTATTATTT
>VPA0882 Score=4.4 Pos=-64 [Vibrio parahaemolyticus RIMD 2210633]
TATTTAGATCCATTAACATTT
>VP0857(feoA) Score=4.4 Pos=-36 [Vibrio parahaemolyticus RIMD 2210633]
TAATATTTATCATTAGCAATA
>VP0857(feoA) Score=5.8 Pos=-42 [Vibrio parahaemolyticus RIMD 2210633]
AAATAATAATATTTATCATTA
>VP2110(PF10952) Score=5.3 Pos=-57 [Vibrio parahaemolyticus RIMD 2210633]
ACTTGATAATAATTATCGTTT
>VP2860(sodA) Score=5 Pos=-58 [Vibrio parahaemolyticus RIMD 2210633]
AGTTGATAATGACTTTCATTA
>VPA0666(VCA0743) Score=4.4 Pos=-216 [Vibrio parahaemolyticus RIMD 2210633]
TAATAAGTAAAGTTATCAGTA
>VP1164(PF11449) Score=4.5 Pos=-30 [Vibrio parahaemolyticus RIMD 2210633]
TAATTATTACCATTTGCATTT
>VP1164(PF11449) Score=5.5 Pos=-62 [Vibrio parahaemolyticus RIMD 2210633]
TATTGCGAATAAATCTCATTT
>VP1164(PF11449) Score=6 Pos=-36 [Vibrio parahaemolyticus RIMD 2210633]
TAATGATAATTATTACCATTT
>VPA0427(hutW) Score=5.6 Pos=-109 [Vibrio parahaemolyticus RIMD 2210633]
AAATAAGATCAATTATCAATT
>VPA0535(VCA1041) Score=5 Pos=-99 [Vibrio parahaemolyticus RIMD 2210633]
AATTGAGAACCATTTACATTA
>VPA0882 Score=4.7 Pos=-86 [Vibrio parahaemolyticus RIMD 2210633]
AAATGATAATGATAGTAATTA
>VP0857(feoA) Score=4.8 Pos=-242 [Vibrio parahaemolyticus RIMD 2210633]
AGATAATATTTATTCTGATTA
>VP2944(COG3315) Score=5.6 Pos=-2 [Vibrio parahaemolyticus RIMD 2210633]
AATTGATATTCATTATCATCT
>VP2647(VC0426) Score=5.1 Pos=-58 [Vibrio parahaemolyticus RIMD 2210633]
TAATGAGAAGTATTATCGATA
>VP2602(irgA) Score=6 Pos=-33 [Vibrio parahaemolyticus RIMD 2210633]
AAATAATAATCATTATCAATT
>VP2769(bfd) Score=4.4 Pos=-59 [Vibrio parahaemolyticus RIMD 2210633]
TAACAAGAACCATTCCCGTTT
>VPA1434 Score=5.5 Pos=-109 [Vibrio parahaemolyticus RIMD 2210633]
TAATTGTAATTATTATCATTT
>VP0857(feoA) Score=5.8 Pos=-42 [Vibrio parahaemolyticus RIMD 2210633]
AAATAATAATATTTATCATTA
>VPA0663 Score=5.4 Pos=-2 [Vibrio parahaemolyticus RIMD 2210633]
TAATGATAATAATTCTCAGGT
>VP2603(irgB) Score=6 Pos=-124 [Vibrio parahaemolyticus RIMD 2210633]
AATTGATAATGATTATTATTT
>VPA0536(VV20568) Score=5 Pos=-252 [Vibrio parahaemolyticus RIMD 2210633]
TAATGTAAATGGTTCTCAATT
>VPA1658(VPA1658) Score=5.5 Pos=-208 [Vibrio parahaemolyticus RIMD 2210633]
AAATAAGAACAAATATTATTT
>VPA1462(torS) Score=4.5 Pos=-40 [Vibrio parahaemolyticus RIMD 2210633]
TAATAATAATGATAATAATCA
>VPA1494(VV20793) Score=5.7 Pos=-57 [Vibrio parahaemolyticus RIMD 2210633]
AATTGATAATCAATTTCATTT
>VPA1494(VV20793) Score=4.8 Pos=-80 [Vibrio parahaemolyticus RIMD 2210633]
AAATGAAAACAATACGCACTT
>VP2491(fbpA) Score=5.3 Pos=-40 [Vibrio parahaemolyticus RIMD 2210633]
AACTGATAAACGTTATCATTA
>VP1920(irpA) Score=5.5 Pos=-33 [Vibrio parahaemolyticus RIMD 2210633]
AAATAAGAATAATTAGCACTA
>VPA0150(fhuE) Score=5.3 Pos=-98 [Vibrio parahaemolyticus RIMD 2210633]
AAATGGTAATACTTATCACTT
>VPA0426(tonB-hmu) Score=5.6 Pos=-74 [Vibrio parahaemolyticus RIMD 2210633]
AATTGATAATTGATCTTATTT
>VP1928(nrfB) Score=5.2 Pos=-140 [Vibrio parahaemolyticus RIMD 2210633]
AAATAAGAATTGATGTCATTT
>VP1928(nrfB) Score=5.3 Pos=-70 [Vibrio parahaemolyticus RIMD 2210633]
AGTTGAGAACAGTTATCAATT
>VPA1467(ptrB) Score=5.9 Pos=-79 [Vibrio parahaemolyticus RIMD 2210633]
AAATGATAATTGATCTCATTT
>VP2332 Score=5.3 Pos=-81 [Vibrio parahaemolyticus RIMD 2210633]
AATTAATAATCATTCCCAATA
>VP2161(COG3016) Score=5.5 Pos=-80 [Vibrio parahaemolyticus RIMD 2210633]
TAACGAAAATCATTCTCATTT
>VPA0004(VV21178) Score=5.8 Pos=-2 [Vibrio parahaemolyticus RIMD 2210633]
TAATGATAATAATTATCTTTT
>VP1165(ppaC) Score=4.5 Pos=-185 [Vibrio parahaemolyticus RIMD 2210633]
AAATGCAAATGGTAATAATTA
>VP1165(ppaC) Score=6 Pos=-179 [Vibrio parahaemolyticus RIMD 2210633]
AAATGGTAATAATTATCATTA
>VP1165(ppaC) Score=5.5 Pos=-153 [Vibrio parahaemolyticus RIMD 2210633]
AAATGAGATTTATTCGCAATA
>VPA0883(VCA0575) Score=4.4 Pos=-189 [Vibrio parahaemolyticus RIMD 2210633]
AAATGTTAATGGATCTAAATA
>VPA0883(VCA0575) Score=5.7 Pos=-173 [Vibrio parahaemolyticus RIMD 2210633]
AAATAATAATTACTATCATTA
>VPA0883(VCA0575) Score=4.7 Pos=-167 [Vibrio parahaemolyticus RIMD 2210633]
TAATTACTATCATTATCATTT
>VP0074(VC0074) Score=5.6 Pos=-66 [Vibrio parahaemolyticus RIMD 2210633]
AACTAAGAATTATTATTATTT
>VPA0657(vctP) Score=5 Pos=-33 [Vibrio parahaemolyticus RIMD 2210633]
GCATGATAATAGATCTCATTA
>VP1609(VV1_2646) Score=5 Pos=-24 [Vibrio parahaemolyticus RIMD 2210633]
AAATAGGACTTATTCTCAATT
>VP2872(VC1572) Score=6.2 Pos=-41 [Vibrio parahaemolyticus RIMD 2210633]
AATTGATAATAATTATCATTA
>VP2872(VC1572) Score=4.5 Pos=-38 [Vibrio parahaemolyticus RIMD 2210633]
TGATAATAATTATCATTATCT
>VPA0979(iutA) Score=5.1 Pos=-55 [Vibrio parahaemolyticus RIMD 2210633]
TATTGATAATAAGTATCATTG
>VPA1657(fepA) Score=5.5 Pos=-60 [Vibrio parahaemolyticus RIMD 2210633]
AAATAATATTTGTTCTTATTT
>VPA1435(fhuA) Score=5.5 Pos=-57 [Vibrio parahaemolyticus RIMD 2210633]
AAATGATAATAATTACAATTA
>VP2146(PF00106) Score=5.9 Pos=-204 [Vibrio parahaemolyticus RIMD 2210633]
AATTGATAATGATTTTCATTA
>VPA0157(PF03929) Score=4.9 Pos=-59 [Vibrio parahaemolyticus RIMD 2210633]
CAATAAGAATGATTATCACCT
# TF - UxuR: VPA1701
>VPA1702(uxuP) Score=5.1 Pos=-33 [Vibrio parahaemolyticus RIMD 2210633]
ATATTGGATAACCAATCC
>VPA1702(uxuP) Score=5.1 Pos=-136 [Vibrio parahaemolyticus RIMD 2210633]
ATTTTGGTCAATCAATTT
>VPA1701(uxuR) Score=5 Pos=-50 [Vibrio parahaemolyticus RIMD 2210633]
ATAGAGGTTGACCAATTG
>VPA1700(uxuA) Score=4.9 Pos=-140 [Vibrio parahaemolyticus RIMD 2210633]
AAAACGGTTAACCACATT
>VPA1703(uxuQ) Score=6 Pos=-163 [Vibrio parahaemolyticus RIMD 2210633]
AAATTGGTTAACCAATTC
>VPA1703(uxuQ) Score=5.3 Pos=-197 [Vibrio parahaemolyticus RIMD 2210633]
AAATTGATTGACCAAAAT
>VPA1703(uxuQ) Score=5.6 Pos=-48 [Vibrio parahaemolyticus RIMD 2210633]
ACATTGGTAAACCAATTG
>VPA1702(uxuP) Score=6 Pos=-170 [Vibrio parahaemolyticus RIMD 2210633]
GAATTGGTTAACCAATTT
# TF - KdgR: VPA0076
>VPA0077(kduD) Score=5.6 Pos=-194 [Vibrio parahaemolyticus RIMD 2210633]
TTTTAAAATGCCTTTTCAAAA
>VPA0077(kduD) Score=5.8 Pos=-121 [Vibrio parahaemolyticus RIMD 2210633]
TTTTAAAACGCCTTTTCAAAA
>VPA0084(togX2) Score=5.2 Pos=-130 [Vibrio parahaemolyticus RIMD 2210633]
TTTTGAAACACCATTTTATTT
>VPA0085(kdgM) Score=5.4 Pos=-110 [Vibrio parahaemolyticus RIMD 2210633]
AATTAAAACACCGTTTTAAAG
>VPA0085(kdgM) Score=5.5 Pos=-20 [Vibrio parahaemolyticus RIMD 2210633]
AAATAAAATGGTGTTTCAAAA
>VPA0084(togX2) Score=5.2 Pos=-40 [Vibrio parahaemolyticus RIMD 2210633]
CTTTAAAACGGTGTTTTAATT
>VPA0082(kdgK) Score=5.4 Pos=-82 [Vibrio parahaemolyticus RIMD 2210633]
AAATGAACCGTTGTTTTATTT
>VPA0087(togX1) Score=5.5 Pos=-93 [Vibrio parahaemolyticus RIMD 2210633]
AAATGAACCGTTGTTTTGATT
>VPA0087(togX1) Score=5.1 Pos=-29 [Vibrio parahaemolyticus RIMD 2210633]
AATTAAAACAGCGTTTCGAGG
>VPA0076(kdgR) Score=5.8 Pos=-140 [Vibrio parahaemolyticus RIMD 2210633]
TTTTGAAAAGGCGTTTTAAAA
>VPA0076(kdgR) Score=5.5 Pos=-67 [Vibrio parahaemolyticus RIMD 2210633]
TTTTGAAAAGGCATTTTAAAA
# TF - FruR: VPA0814
>VPA0813(fruB) Score=5.1 Pos=-294 [Vibrio parahaemolyticus RIMD 2210633]
GCTGAACCGATTCAGT
>VPA0813(fruB) Score=5.2 Pos=-272 [Vibrio parahaemolyticus RIMD 2210633]
GCTGAAAGGATTCAGC
>VPA0813(fruB) Score=5.6 Pos=-114 [Vibrio parahaemolyticus RIMD 2210633]
GCTGAATCGATTCAGT
>VPA0814(fruR) Score=5.2 Pos=-266 [Vibrio parahaemolyticus RIMD 2210633]
ACTGAATCGATTCAGC
>VPA0814(fruR) Score=5.1 Pos=-108 [Vibrio parahaemolyticus RIMD 2210633]
GCTGAATCCTTTCAGC
>VPA0814(fruR) Score=4.8 Pos=-86 [Vibrio parahaemolyticus RIMD 2210633]
ACTGAATCGGTTCAGC
# TF - PurR: VP1030
>VP0156(xanP) Score=5.2 Pos=-166 [Vibrio parahaemolyticus RIMD 2210633]
TAGCAAACGATTGCTT
>VP2284(upp) Score=5.8 Pos=-114 [Vibrio parahaemolyticus RIMD 2210633]
TAGCAAACGTTTGCGT
>VP0715(glyA) Score=6.1 Pos=-74 [Vibrio parahaemolyticus RIMD 2210633]
ACGAAAACGTTTGCGT
>VP0879(folD) Score=6.1 Pos=-87 [Vibrio parahaemolyticus RIMD 2210633]
AGGCAAACGTTTGCGT
>VP1263(purC) Score=6.1 Pos=-134 [Vibrio parahaemolyticus RIMD 2210633]
AGGCAAACGTTTGCTT
>VP1128(purB) Score=5.6 Pos=-89 [Vibrio parahaemolyticus RIMD 2210633]
GCGCAAACGTTTGCGC
>VP0617(guaA) Score=5.9 Pos=-91 [Vibrio parahaemolyticus RIMD 2210633]
ACGTAAACGTTTGCTT
>VP3036(purE) Score=6.2 Pos=-88 [Vibrio parahaemolyticus RIMD 2210633]
ACGCAAACGTTTGCTT
>VP1297(purT) Score=6.2 Pos=-83 [Vibrio parahaemolyticus RIMD 2210633]
AAGCAAACGTTTGCTT
>VP0666(purL) Score=5.9 Pos=-159 [Vibrio parahaemolyticus RIMD 2210633]
ACGCAAACGGTTGCTT
>VP2285(purM) Score=5.8 Pos=-82 [Vibrio parahaemolyticus RIMD 2210633]
ACGCAAACGTTTGCTA
>VP2186(cvpA) Score=6 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
AAGAAAACGTTTGCGT
>VPA0834(fhs) Score=5.6 Pos=-85 [Vibrio parahaemolyticus RIMD 2210633]
GCGCAAACGTTTGCGC
>VP1132(gsk) Score=5.1 Pos=-94 [Vibrio parahaemolyticus RIMD 2210633]
CAGCAAACGTTTGCTA
>VP2896(purH) Score=4.2 Pos=-196 [Vibrio parahaemolyticus RIMD 2210633]
TGCCAAACGATTGCGC
# TF - RbsR: VPA1082
>VPA1087(rbsD) Score=7 Pos=-226 [Vibrio parahaemolyticus RIMD 2210633]
CCATCGAAACGTTTCGATGA
>VPA1087(rbsD) Score=6.7 Pos=-96 [Vibrio parahaemolyticus RIMD 2210633]
GCATCGAAACGTTTCGATGA
# TF - LexA: VP2945
>VP0518(mutH) Score=4.6 Pos=-162 [Vibrio parahaemolyticus RIMD 2210633]
CCCTGTTTATTCATCCAGCC
>VP2100(uvrB) Score=5 Pos=-74 [Vibrio parahaemolyticus RIMD 2210633]
AGGTGTATATATATACAGCG
>VP1865(intIA) Score=5.1 Pos=-30 [Vibrio parahaemolyticus RIMD 2210633]
ACCTGTATAAATAAACAGAC
>VP2034(imuA) Score=5.9 Pos=-29 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTATTTATATACAGGT
>VP1264(VC1191) Score=5.6 Pos=-39 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTATACACATACAGCA
>VP0157(recG) Score=5 Pos=-65 [Vibrio parahaemolyticus RIMD 2210633]
TCCTGTACAAAAACACAGCT
>VP1428(VC1368) Score=6 Pos=-39 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTTTTTATATACAGTA
>VP2342(dinB) Score=5.6 Pos=-31 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTATTTTTAACCAGTG
>VP2550(recA) Score=5.4 Pos=-110 [Vibrio parahaemolyticus RIMD 2210633]
CACTGTATGAATCAACAGTA
>VP0094(rmuC) Score=5.5 Pos=-67 [Vibrio parahaemolyticus RIMD 2210633]
AACTGGACATTTATCCAGTG
>VP1051(ruvA) Score=5.1 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
GACTGGATGTCTATCCAGTT
>VP2712(uvrA) Score=5.3 Pos=-85 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTTTTTTTGTCCAGTA
>VP3013(uvrD) Score=5.4 Pos=-27 [Vibrio parahaemolyticus RIMD 2210633]
TTATGTATAAATAACCAGTA
>VP2379(yebG) Score=5.8 Pos=-47 [Vibrio parahaemolyticus RIMD 2210633]
AACTGTATAAAAAGCCAGTA
>VP2946(VP2946) Score=5.2 Pos=-41 [Vibrio parahaemolyticus RIMD 2210633]
ACCTGTCTTTTTATACAGTT
>VP2946(VP2946) Score=5.2 Pos=-21 [Vibrio parahaemolyticus RIMD 2210633]
AACTGTGAGTATATCCAGTA
>VP2945(lexA) Score=5.6 Pos=-25 [Vibrio parahaemolyticus RIMD 2210633]
AACTGTATAAAAAGACAGGT
>VP2945(lexA) Score=5.4 Pos=-45 [Vibrio parahaemolyticus RIMD 2210633]
TACTGGATATACTCACAGTT
>VP2149(topB) Score=5.7 Pos=-85 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTTCATTTATACAGTT
>VP0648(recN) Score=5.4 Pos=-46 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTTCTCATATACAGTA
>VP0648(recN) Score=6 Pos=-68 [Vibrio parahaemolyticus RIMD 2210633]
TACTGTATAAAGAAACAGTA
# TF - LiuR: VPA0619, VPA1124
>VPA1124(liuR) Score=5.4 Pos=-66 [Vibrio parahaemolyticus RIMD 2210633]
GTTTACTTTAACGTTAAC
>VPA1124(liuR) Score=5.8 Pos=-166 [Vibrio parahaemolyticus RIMD 2210633]
ATTTACGTTAACGTCAAG
>VPA1124(liuR) Score=5.1 Pos=-195 [Vibrio parahaemolyticus RIMD 2210633]
GTTGACGTTTACGTCATA
>VPA1156(etfB) Score=5.1 Pos=-79 [Vibrio parahaemolyticus RIMD 2210633]
GTTGATGCAAACGTAAAG
>VPA0619(liuR) Score=5.7 Pos=-129 [Vibrio parahaemolyticus RIMD 2210633]
CTTGACGTTTACGTAAGC
>VPA0643(etfD2) Score=4.8 Pos=-86 [Vibrio parahaemolyticus RIMD 2210633]
ATTCACGTTTACGTTAAC
>VPA1155(etfD1) Score=5.1 Pos=-77 [Vibrio parahaemolyticus RIMD 2210633]
CTTTACGTTTGCATCAAC
>VPA1153(livG) Score=5.6 Pos=-110 [Vibrio parahaemolyticus RIMD 2210633]
ATTGACGTTTACGTAAAC
>VPA1123(ivdA2) Score=5.4 Pos=-161 [Vibrio parahaemolyticus RIMD 2210633]
GTTAACGTTAAAGTAAAC
>VPA0620(ivdA1) Score=5.7 Pos=-147 [Vibrio parahaemolyticus RIMD 2210633]
GCTTACGTAAACGTCAAG
>VPA1123(ivdA2) Score=5.1 Pos=-32 [Vibrio parahaemolyticus RIMD 2210633]
TATGACGTAAACGTCAAC
>VPA1123(ivdA2) Score=5.8 Pos=-61 [Vibrio parahaemolyticus RIMD 2210633]
CTTGACGTTAACGTAAAT
# TF - EbgR: VP2402
>VP2403(ebgA) Score=4.3 Pos=-168 [Vibrio parahaemolyticus RIMD 2210633]
AACGTTTTCACTAATTTATTT
>VP2403(ebgA) Score=6.1 Pos=-155 [Vibrio parahaemolyticus RIMD 2210633]
ATTTATTTTAGTAAAACTTTT
>VP2403(ebgA) Score=5.7 Pos=-143 [Vibrio parahaemolyticus RIMD 2210633]
AAAACTTTTACTAATATCTTT
>VP2402(ebgR) Score=5.1 Pos=-102 [Vibrio parahaemolyticus RIMD 2210633]
CTCGATTTTACTAAAAGTTTG
# TF - PsrA: VP1229
>VP2151(fadH) Score=5.5 Pos=-87 [Vibrio parahaemolyticus RIMD 2210633]
ATGTAAACACCTGTTTGATT
>VP2209(fadI) Score=5.6 Pos=-78 [Vibrio parahaemolyticus RIMD 2210633]
ATTTAAACGCACGTTTGATA
>VP0030(fadB) Score=5.5 Pos=-175 [Vibrio parahaemolyticus RIMD 2210633]
TGTTAAACACTTGTTTAAAA
>VP1229(psrA) Score=5.5 Pos=-32 [Vibrio parahaemolyticus RIMD 2210633]
TTTCAAACAGTTGTTTAATA
>VP0870(fadD) Score=5.6 Pos=-112 [Vibrio parahaemolyticus RIMD 2210633]
ATTTAAACAAGTGTTTGAGA
>VP0583(mdh) Score=5.2 Pos=-348 [Vibrio parahaemolyticus RIMD 2210633]
ATTCATACACCTGTTTTAAA
# TF - PhnR: VPA0240
>VPA0355(phnR2) Score=3.6 Pos=-18 [Vibrio parahaemolyticus RIMD 2210633]
CTATTGGACTAGGTCAGAAT
>VPA0235(phnW) Score=5 Pos=-42 [Vibrio parahaemolyticus RIMD 2210633]
TTTCTGGTGTAGACCAATTA
>VPA0236(phnS) Score=5 Pos=-246 [Vibrio parahaemolyticus RIMD 2210633]
TAATTGGTCTACACCAGAAA
>VPA0236(phnS) Score=5.4 Pos=-48 [Vibrio parahaemolyticus RIMD 2210633]
CAACTGGTACAGACCAAAAT
>VPA0238(phnT) Score=5.6 Pos=-31 [Vibrio parahaemolyticus RIMD 2210633]
AAGTTGGTATATACCATTTG
>VPA0354(phnS2) Score=4.2 Pos=-211 [Vibrio parahaemolyticus RIMD 2210633]
ATTCTGACCTAGTCCAATAG
>VPA0354(phnS2) Score=3.8 Pos=-30 [Vibrio parahaemolyticus RIMD 2210633]
TTACTGACCTAGTCCAGAAG
>VPA0235(phnW) Score=5.4 Pos=-240 [Vibrio parahaemolyticus RIMD 2210633]
ATTTTGGTCTGTACCAGTTG
# TF - NorR2: VP1190
>VP1190(norR2) Score=5.4 Pos=-61 [Vibrio parahaemolyticus RIMD 2210633]
CGATGTTCAAATGACATCA
>VP1189(hcp) Score=5.7 Pos=-136 [Vibrio parahaemolyticus RIMD 2210633]
CGTTGTCTTAATTACATCA
>VP1189(hcp) Score=5.9 Pos=-159 [Vibrio parahaemolyticus RIMD 2210633]
CGATGTAATTAAGACATCA
# RNA - mini-ykkC
>VPA0756(ykkC) Score=49 Pos=-66 [Vibrio parahaemolyticus RIMD 2210633]
AGTGAGGACGACCTCACCGCTCTATCTTTTCTCGGGGACGACCCCAAT
# RNA - MOCO_RNA_motif
>VP2096(moaA) Score=95.4 Pos=-108 [Vibrio parahaemolyticus RIMD 2210633]
CTGGTTGCCATAACTCCGAGCTCACTATGCTAAGTCCGAGGATAAGCATTTTGAGCCAGTGACATACTGTCACAAGGGCATGATTGGAAATGGCCATGCCTCCCGTGTTTGGAAAGGTGTTCCGTGGCGCAACAA
# RNA - FMN
>VPA1250(ribB) Score=128 Pos=-253 [Vibrio parahaemolyticus RIMD 2210633]
ATTGTTCTCAGGGCGGGGCGAAATTCCCCACCGGCGGTATACTTTTTCAAGTGAGCCCGCGAGCGCTCGATTCGTCGAGGTCAGCAGATCTGGTGAGATGCCAGAGCCGACGGTTATAGTCCGGATGAAAGAGAATAAGAAT
# RNA - Trp_leader
>VP1956(trpE) Score=74.2 Pos=-228 [Vibrio parahaemolyticus RIMD 2210633]
TTGCTTGGTGGCGCACTTGGACAAGTTCTTGGTGGGCTAACGTGTACTTCTAGTTTAGAAAAACAAACGTCATAAAGCCCGCTACTCAAGCGGGCTTTTTATTTT
# RNA - yybP-ykoY
>VPA0856(ykoY) Score=47 Pos=-285 [Vibrio parahaemolyticus RIMD 2210633]
ATGGCGGCGTTTGGGGAGTAGTTAGCGCAAGTTTACTTATCGTCATCTCGTTAAGCGATAGCTTATCCGGTAAGTAAAGGTGTCTGATTGAACATTCAATCTTGGCACTTCAACGAGACCAACGCATTCATTGA
>VP0023(COG2119) Score=56 Pos=-205 [Vibrio parahaemolyticus RIMD 2210633]
CGCCTGTCTTTGGGGAGTAGCTTACCTGATGAAGTCTCTGTTTCATCCGGTTCGTTCGTCAACATAATTGGTGCAAAATCACCATGGCGTTCGAGACTTGAAGCCTTTCAAGTTTAGCAAGACCTTAGACAAATCATC
# RNA - Purine
>VPA1292(add) Score=68.3 Pos=-188 [Vibrio parahaemolyticus RIMD 2210633]
ATAATCGCAAGCGTTTGCTTCGTATAACCCCAATGATATGGTTTGGGGGTCTCTACCAGTTCCCGCAAAGTGCTGATTACGAAGAGTTGAGATCACTGTGG
# RNA - Lysine
>VP1134(lysW) Score=127 Pos=-293 [Vibrio parahaemolyticus RIMD 2210633]
GTTGCCGTAGAGGCGCAGTCTCGAAGAGTAGCTATTATTGGGGTGATGCCAATGAATAATAGTGGAAGGCGAAGATTGCCGAAGTAAGTCGTATATCAAAACGCCTTGCTGGGGTTGTATCTGAAAGGAACAACACTGCCATAGTATATTTACATTAAACTATGGAGCGCTACTGTAGGGTT
>VP2715(lysC) Score=79.6 Pos=-280 [Vibrio parahaemolyticus RIMD 2210633]
TATGTAGAAGAGGAGCACTGCCCAGGCAGATGATTTGTGGAACCGCAATTCCAATACCAATCATTCAGGGGGAGTAGTGCCGAGGTAAGTCAAAATTGCAGGGTTTGGCTTGTCGGTTGACTTGGGTTGAGTCCCATCAACTGTCATCAGCACCGTCTGATGAAGAGCTTCTGAGGGTAC
# RNA - Leu_leader
>VP0346(leuA) Score=36.7 Pos=-197 [Vibrio parahaemolyticus RIMD 2210633]
CAACTATGTCAGCTCATTTTTCTATCCTGCTTAGCCTCCTCCTGATCGTGACCAGTTCGCGCGGGTAGGCTGTGGAAGAAAAATAACCACACCAATTTCTTAGAAACCCGCATGAAAATGCGGGTTTTTTT
# RNA - TPP
>VP3027(thiC) Score=73.9 Pos=-268 [Vibrio parahaemolyticus RIMD 2210633]
GCTTCACTTGTCGGAGTGCCATAAGGCTGAGACCGTTAATTCGGGATCCGTTGAACCTGATCAGATTAATATCTGCGAAGGGAACAAGAGAAGATACCTA
>VPA0136(thiD) Score=71.5 Pos=-205 [Vibrio parahaemolyticus RIMD 2210633]
AGCGAAATAGTCGGGGGGCCACGTGATAAGCGTTGGCTGAGATCGAAATTCGAGACCCGTTGAACCTGATTCAGTTAGCACTGACGTAGGGAACTATGCGCGCTTTGCC
>VP0316(thiB) Score=54.7 Pos=-208 [Vibrio parahaemolyticus RIMD 2210633]
CCAACTCATCGGGGAGCAAACCCATTTTGCATTGAGTCAATCAATGCATTTGGGCGCTGAGACCTAAGTGTTTTACTAGGGACCCGTATTACCTGAACCAGATAATGCTGGCGTAGGAATTGAGTCTGGATATTGGAA
# RNA - GEMM_RNA_motif
>VPA1598(cbp) Score=51.5 Pos=-204 [Vibrio parahaemolyticus RIMD 2210633]
TCACATTTCGGCAAACCATTCGAAAGGATGGGACGCAAAGCTTCCAGTCTGCCAGCACTGCTTAACTAGTCAACACTAGTGCTTAAGATAACGGGGTTGCCACTTT
>VP1028(tfoX) Score=69.3 Pos=-207 [Vibrio parahaemolyticus RIMD 2210633]
GTCACGCACAGGGCAAACCATCCGAAAGGGTGGGACGCAAAGCCTCCGGCCTGAACCATAGTAGTATATGGAAGGTAGCGGGGTTACCGAT
# RNA - S15
>VP2453(rpsO) Score=91.5 Pos=-64 [Vibrio parahaemolyticus RIMD 2210633]
TCGTGTCGGCTGAATCAGAGATTGGCTGGCACAAACATTAACTTACTCTTATTAGGAGAGAATTATGTCTCTGAATGCAGAAACTAAAGCAGCAATCGTTGCAGAATACGCACAATCTGAA
# RNA - Glycine
>VP1741(glyP) Score=63.3 Pos=-211 [Vibrio parahaemolyticus RIMD 2210633]
CTCTGGAGAGAACCGTTAAATCGGTCGCCGAAGGAGCAAGTCCTGCACATGTGTGCGGGGTGAAACTCTCAGGCAAAAGGACAGAGGAG
>VP1741(glyP) Score=30.2 Pos=-327 [Vibrio parahaemolyticus RIMD 2210633]
TGAAGACTGCAGGAGAGTGGTTATTAACCAAACTTTAACATTTGGTTAGATTAACTCGCCGAAGAATTAACTATTTCAGGTGCTACCTTGGTAGCGGGGACTGTAGTTGGAGGAA
# RNA - Thr_leader
>VP0494(thrA) Score=68.4 Pos=-173 [Vibrio parahaemolyticus RIMD 2210633]
CCTAGTAGTAATGACCACGACCATTATTATTACCGACACGACAAATGTTGGGGCAGGCTGCTGAGCGAAAGAAATTCACAAAAAAGGCCTGTATCCAACAAGATACAGGCCTTTTTTTATG
# RNA - Cobalamin
>VP2938(btuB) Score=100.2 Pos=-260 [Vibrio parahaemolyticus RIMD 2210633]
ATAATATTTGCCTCAAGCTGGTGTCATCTAGCAATCTAGATGGCTGAAATGGGAATCTGGTGAAAATCCAGAACTGACGCGCAGCGGTAAAAGAGAACGAACGCTCATCACGACACTGCATTAGTTTATGTGGGAAGTCGAGCAACTAGGTGGTGTAAACCTCGCTCTTCAGTCCGAATACCTGCCAGCAACTGAGCCACAGCA
# RNA - His_leader
>VP1137(hisG) Score=76.9 Pos=-173 [Vibrio parahaemolyticus RIMD 2210633]
CATCACCATCATCACCCAGCCTAGTCTTTCGGGAGATGTACGCATACCCGGGAGGCAGGAAACTCCCGGAGGTGAAAATCAAAGTAAGAACAGATTTTAAACCCTCGGGAGACGCCAATCTCTCGAGGGTTTTTTAGTTT
# TF - NarP: VPA1195
>VP2223(ccmA) Score=3.9 Pos=-146 [Vibrio parahaemolyticus RIMD 2210633]
TAGCCACTTATGGTTA
>VP2863(aspA) Score=4.7 Pos=-225 [Vibrio parahaemolyticus RIMD 2210633]
TACCCACAAAGGGTTA
>VPA1058(nrtC) Score=4.5 Pos=-260 [Vibrio parahaemolyticus RIMD 2210633]
TACTACTTTGGAGTTA
>VPA0566(adhB) Score=5.1 Pos=-113 [Vibrio parahaemolyticus RIMD 2210633]
TACCCCTAAATGGGTA
>VP2121(adhE) Score=4.3 Pos=-192 [Vibrio parahaemolyticus RIMD 2210633]
CACTACTTTGGTGGTA
>VPA1197(napF) Score=5.1 Pos=-123 [Vibrio parahaemolyticus RIMD 2210633]
TACCTCCTAAGAGGTA
>VPA0987(nirB) Score=4.7 Pos=-18 [Vibrio parahaemolyticus RIMD 2210633]
TAACCCTTAGGAAGTA
>VP1928(nrfB) Score=3.9 Pos=-197 [Vibrio parahaemolyticus RIMD 2210633]
TACCTCTTAGGAATAA
>VPA1196(narQ) Score=5.1 Pos=-140 [Vibrio parahaemolyticus RIMD 2210633]
TACCTCTTAGGAGGTA
>VP1929(nrfA) Score=5.4 Pos=-189 [Vibrio parahaemolyticus RIMD 2210633]
TACCACTTTAGGGGTA
>VP1929(nrfA) Score=4.1 Pos=-293 [Vibrio parahaemolyticus RIMD 2210633]
TTATTCCTAAGAGGTA
>VP0994(pflB) Score=4 Pos=-24 [Vibrio parahaemolyticus RIMD 2210633]
TTCTACTAAAAAGGTA
>VP1928(nrfB) Score=5.3 Pos=-301 [Vibrio parahaemolyticus RIMD 2210633]
TACCCCTAAAGTGGTA
>VPA0987(nirB) Score=4.1 Pos=-108 [Vibrio parahaemolyticus RIMD 2210633]
TACCCCTTTAGGGTAG
>VPA0127(torY) Score=4.5 Pos=-60 [Vibrio parahaemolyticus RIMD 2210633]
TACCTACAAAGTAGTA
>VP2096(moaA) Score=4.4 Pos=-218 [Vibrio parahaemolyticus RIMD 2210633]
TACTCACTAAGCGGTA
# TF - GntR: VP0058
>VP0063(gntK) Score=5.9 Pos=-107 [Vibrio parahaemolyticus RIMD 2210633]
TTCAGTTACCGGTAACATGT
>VP0063(gntK) Score=6.5 Pos=-93 [Vibrio parahaemolyticus RIMD 2210633]
ACATGTTACCGATAACATGA
>VP0064(gntU) Score=6.5 Pos=-80 [Vibrio parahaemolyticus RIMD 2210633]
TCATGTTATCGGTAACATGT
>VP0064(gntU) Score=5.9 Pos=-66 [Vibrio parahaemolyticus RIMD 2210633]
ACATGTTACCGGTAACTGAA
# TF - NmlR: VPA1142
>VPA1141(pcaC) Score=6.5 Pos=-58 [Vibrio parahaemolyticus RIMD 2210633]
CTTAGAGTTCACTCTAAC
# TF - SoxR: VPA0335
>VPA0335(soxR) Score=6.8 Pos=-60 [Vibrio parahaemolyticus RIMD 2210633]
ACCTCAAGTAAACTTGAGGT
>VPA0333(PF07690) Score=6.8 Pos=-160 [Vibrio parahaemolyticus RIMD 2210633]
ACCTCAAGTTTACTTGAGGT
>VPA0391(PF00903) Score=6.5 Pos=-69 [Vibrio parahaemolyticus RIMD 2210633]
ACCTAAACTTAGCTTGAGGT
>VPA1738(wrbA) Score=6.2 Pos=-70 [Vibrio parahaemolyticus RIMD 2210633]
ACCTAAACCAAACTTGAGGT
>VPA1685(PF00903) Score=6.4 Pos=-67 [Vibrio parahaemolyticus RIMD 2210633]
ACCTCGATTTAACTTGAGGT
# TF - ZntR: VP2894
>VP0959(zntA) Score=6.6 Pos=-71 [Vibrio parahaemolyticus RIMD 2210633]
ACCTTGGAGCTAGCTCCAAGGT
# TF - CueR: VPA0662
>VP0758(copA) Score=5.6 Pos=-58 [Vibrio parahaemolyticus RIMD 2210633]
ACCTTCCCCTTGATGTAAGGT
>VPA0484(VCA0262) Score=4.7 Pos=-72 [Vibrio parahaemolyticus RIMD 2210633]
ACTTTCCCCCTAGGGTAACCT
>VPA1012(PF00034) Score=5.7 Pos=3 [Vibrio parahaemolyticus RIMD 2210633]
AGCTTCCCCTTAGGGGAAGCT
# TF - MetJ: VP2766
>VP2765(metB) Score=6.6 Pos=-135 [Vibrio parahaemolyticus RIMD 2210633]
AGAAGTGTTGACGTCT
>VPA1481(mtsA) Score=5.3 Pos=-252 [Vibrio parahaemolyticus RIMD 2210633]
AGCCATCCAGACAGAT
>VP2765(metB) Score=7.4 Pos=-143 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAGAAGTGT
>VP0706(metN) Score=7.1 Pos=-153 [Vibrio parahaemolyticus RIMD 2210633]
ATACATTTAGACGTCT
>VP0706(metN) Score=7.1 Pos=-145 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAGACGTAA
>VP0706(metN) Score=6.1 Pos=-137 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTAAAAATATCT
>VP1974(metE) Score=6.3 Pos=-81 [Vibrio parahaemolyticus RIMD 2210633]
AGCCATCCAGACATCT
>VP1974(metE) Score=6.2 Pos=-210 [Vibrio parahaemolyticus RIMD 2210633]
GGATATGTAAACGTCT
>VP1974(metE) Score=7.7 Pos=-202 [Vibrio parahaemolyticus RIMD 2210633]
AAACGTCTAGACGTCT
>VP2766(metJ) Score=7.7 Pos=-92 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTATATGTCT
>VP2766(metJ) Score=6 Pos=-108 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCAACACTTCT
>VP2766(metJ) Score=6.9 Pos=-100 [Vibrio parahaemolyticus RIMD 2210633]
ACACTTCTAGACGTCT
>VP2717(metH) Score=7.3 Pos=-66 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAGACTCCT
>VP0632(metT) Score=7.4 Pos=-21 [Vibrio parahaemolyticus RIMD 2210633]
AGCCATTTAGACGTCT
>VP0632(metT) Score=7.6 Pos=-13 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAGACGTTG
>VP2606(metK) Score=7.2 Pos=-97 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAGATGTAG
>VP2938(btuB) Score=6.9 Pos=-231 [Vibrio parahaemolyticus RIMD 2210633]
AGCAATCTAGATGGCT
>VP2763(metF) Score=7.7 Pos=-70 [Vibrio parahaemolyticus RIMD 2210633]
AGACATATAGACGTCT
>VP2763(metF) Score=7.3 Pos=-62 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAAACGTCG
>VP0379(metQ2) Score=7.5 Pos=-36 [Vibrio parahaemolyticus RIMD 2210633]
AGCCGTATGGACGTCT
>VP2765(metB) Score=8.1 Pos=-151 [Vibrio parahaemolyticus RIMD 2210633]
AGACATATAGACGTCT
>VP1976(metR) Score=8.1 Pos=-259 [Vibrio parahaemolyticus RIMD 2210633]
AGACGTCTAGACGTTT
>VP1751(metA) Score=7.9 Pos=-45 [Vibrio parahaemolyticus RIMD 2210633]
AGAAGTATAGACGTCT
# TF - GalR: VP2393
>VP2393(galR) Score=5.6 Pos=-149 [Vibrio parahaemolyticus RIMD 2210633]
AAAAGATAACGTTTACACTA
>VP2400(galE) Score=6.3 Pos=-170 [Vibrio parahaemolyticus RIMD 2210633]
TTGTGGAAACGTTTACACAA
# TF - SgaR: VPA0232
>VPA0231(sgaA) Score=5.9 Pos=-131 [Vibrio parahaemolyticus RIMD 2210633]
AAATGATAGCGCTATCACAA
>VPA0232(sgaR) Score=5.9 Pos=-138 [Vibrio parahaemolyticus RIMD 2210633]
TTGTGATAGCGCTATCATTT
>VPA0232(sgaR) Score=6.3 Pos=-159 [Vibrio parahaemolyticus RIMD 2210633]
ATCTGATAGCGCTACCATTA
>VPA0232(sgaR) Score=6.3 Pos=-172 [Vibrio parahaemolyticus RIMD 2210633]
AAATGGTAGCGCTATCTGAT
>VPA0231(sgaA) Score=6.3 Pos=-110 [Vibrio parahaemolyticus RIMD 2210633]
TAATGGTAGCGCTATCAGAT
>VPA0231(sgaA) Score=6.3 Pos=-97 [Vibrio parahaemolyticus RIMD 2210633]
ATCAGATAGCGCTACCATTT
# TF - CelR: VP2632
>VP2637(celB) Score=7.1 Pos=-84 [Vibrio parahaemolyticus RIMD 2210633]
TAGCGCAACCGGTTGCGCTT
>VP2638(celG) Score=7 Pos=-183 [Vibrio parahaemolyticus RIMD 2210633]
AAGCGCAACCGGTTGCGCTA
# TF - TreR: VP0709
>VP0710(treB) Score=6.7 Pos=-127 [Vibrio parahaemolyticus RIMD 2210633]
TAATGGGACTGTTCCCATTT
>VP0710(treB) Score=7 Pos=-71 [Vibrio parahaemolyticus RIMD 2210633]
AAATGGGAATGTTCCCATTT
# TF - VIBHAR_07005: VPA0034
>VPA0034(VIBHAR_07005) Score=6.7 Pos=-39 [Vibrio parahaemolyticus RIMD 2210633]
TAGTGTTATACATATATATAACACCA
# TF - VP2396: VP2396
>VP2395(GH5) Score=6.1 Pos=-63 [Vibrio parahaemolyticus RIMD 2210633]
AAATTATTAATTAATATATT
>VP2396(VP2396) Score=6.1 Pos=-169 [Vibrio parahaemolyticus RIMD 2210633]
AATATATTAATTAATAATTT
>VP2396(VP2396) Score=5 Pos=-49 [Vibrio parahaemolyticus RIMD 2210633]
TAATCTTTAGCTAATATCTT
>VP2396(VP2396) Score=6.4 Pos=-181 [Vibrio parahaemolyticus RIMD 2210633]
ATAATATTAGCTAATATATT
>VP2396(VP2396) Score=5.9 Pos=-194 [Vibrio parahaemolyticus RIMD 2210633]
AAATTATTAACTAATAATAT
>VP2395(GH5) Score=6.4 Pos=-51 [Vibrio parahaemolyticus RIMD 2210633]
AATATATTAGCTAATATTAT
>VP2395(GH5) Score=5.9 Pos=-38 [Vibrio parahaemolyticus RIMD 2210633]
ATATTATTAGTTAATAATTT
>VP2395(GH5) Score=5 Pos=-183 [Vibrio parahaemolyticus RIMD 2210633]
AAGATATTAGCTAAAGATTA
# TF - MetR: VP1976
>VP1975 Score=4.8 Pos=-118 [Vibrio parahaemolyticus RIMD 2210633]
ATTAAAAAAATTCAT
>VP0715(glyA) Score=5.1 Pos=-155 [Vibrio parahaemolyticus RIMD 2210633]
ATGAAAAAACTGCAT
>VP2763(metF) Score=4.3 Pos=-126 [Vibrio parahaemolyticus RIMD 2210633]
GTGAGAAAAATTCAT
>VP1974(metE) Score=4.8 Pos=-149 [Vibrio parahaemolyticus RIMD 2210633]
ATGAATTTTTTTAAT
>VP1992(PF08908) Score=5.3 Pos=-234 [Vibrio parahaemolyticus RIMD 2210633]
ATGAATTTCTTTCAT
# TF - TyrR: VP1869
>VPA0575(acsA) Score=5.1 Pos=-130 [Vibrio parahaemolyticus RIMD 2210633]
ATGTAACATATTGTTTACAT
>VP1349(hpd) Score=5.6 Pos=-154 [Vibrio parahaemolyticus RIMD 2210633]
GTGTAACATTAATTTTACAT
>VP0546(aroF) Score=6 Pos=-29 [Vibrio parahaemolyticus RIMD 2210633]
GTGTAAAAATAAATATACAG
>VP1426(tyrP) Score=6.1 Pos=-167 [Vibrio parahaemolyticus RIMD 2210633]
GTGTAAATATAATTTTACGG
>VP1426(tyrP) Score=5.4 Pos=-19 [Vibrio parahaemolyticus RIMD 2210633]
ATGTAAAGATAAATATACAA
>VPA1185(aroG) Score=5.4 Pos=-222 [Vibrio parahaemolyticus RIMD 2210633]
GTGTAAATATTATTTTACGA
>VP1184(COG0733) Score=6 Pos=-80 [Vibrio parahaemolyticus RIMD 2210633]
GTGTATATAAATATTTACAC
>VPA0576(phhA) Score=5.6 Pos=-111 [Vibrio parahaemolyticus RIMD 2210633]
ATGTAAACAATATGTTACAT
>VP0546(aroF) Score=6.5 Pos=-139 [Vibrio parahaemolyticus RIMD 2210633]
GTGTAAATTAATATTTACAG
# TF - YdcR: VPA1136, VP1896
>VP1894 Score=6.6 Pos=-34 [Vibrio parahaemolyticus RIMD 2210633]
AACTGTTTACCTATT---------AACTGTATCAGTGAA
>VP3052(COG0348) Score=6.7 Pos=-155 [Vibrio parahaemolyticus RIMD 2210633]
AACTGTTCAGCCGTT---------AACTGTACTGACTTT
>VPA1137(PF01654) Score=8 Pos=-100 [Vibrio parahaemolyticus RIMD 2210633]
ATCTGTTATAGGTTT---------GTCTGTACCTACTTC
# TF - VEA_000881: VPA0118
>VPA0119(PF00892) Score=15.9 Pos=-104 [Vibrio parahaemolyticus RIMD 2210633]
ATCTGTACCCA-(13)-ATCTGTCACTT-(8)-CACTGTACCTA
# TF - PdxW: VPA1237
>VPA1238(pdxO) Score=15.4 Pos=-84 [Vibrio parahaemolyticus RIMD 2210633]
AATTGGATCCAT-(11)-AAGTGGCTCTCT-(2)-AAGCTACCAGTT
# TF - PhsR: VP1202
>VP1201(phsS) Score=7.3 Pos=-225 [Vibrio parahaemolyticus RIMD 2210633]
GGTATTGTGGTTTCCCACAATAAT
>VP1200(sirA) Score=7.3 Pos=-215 [Vibrio parahaemolyticus RIMD 2210633]
ATTATTGTGGGAAACCACAATACC
# TF - SdaR: VPA0115
>VPA0116(grtP) Score=6.8 Pos=-158 [Vibrio parahaemolyticus RIMD 2210633]
TATTGTGCATTTGCACAATA
# TF - TtrR: VP2009
>VP2011(ttrC) Score=6.4 Pos=-89 [Vibrio parahaemolyticus RIMD 2210633]
GGGTATGTGGAAATCCACTATATC
>VP2010(ttrS) Score=6.4 Pos=-215 [Vibrio parahaemolyticus RIMD 2210633]
GATATAGTGGATTTCCACATACCC
# TF - PhrR: VPA1472
>VPA1473(COG3272) Score=6.4 Pos=-83 [Vibrio parahaemolyticus RIMD 2210633]
TGTACAACTAATTTTCTTGTACA
>VP1119(PF07366) Score=6.3 Pos=-51 [Vibrio parahaemolyticus RIMD 2210633]
TGTACATGTAATATTTTTGTACA
>VP1119(PF07366) Score=6.4 Pos=-96 [Vibrio parahaemolyticus RIMD 2210633]
TATACAAGTTTTTTTTTTGTACA
>VPA1473(COG3272) Score=6.2 Pos=-37 [Vibrio parahaemolyticus RIMD 2210633]
TATACAACTAAACTTTTTGTATA