# TF - TyrR: HSM_1076
>HSM_1080(tyrA) Score=5 Pos=-57 [Haemophilus somnus 2336]
TTGTAAGTTATTTTTTACAA
>HSM_1080(tyrA) Score=5.7 Pos=-34 [Haemophilus somnus 2336]
TTGTAATAATAAATGTACAA
>HSM_1247(tyrP) Score=5.7 Pos=-99 [Haemophilus somnus 2336]
ATGTAAACATAATATTACAT
>HSM_1247(tyrP) Score=5.7 Pos=-78 [Haemophilus somnus 2336]
TTGTAAAAATAAAATTACAC
# TF - ArgR: HSM_1540
>HSM_0124(artP) Score=4.3 Pos=-94 [Haemophilus somnus 2336]
AAAGAATTTTTTTGCAAA
>HSM_0124(artP) Score=5.5 Pos=-73 [Haemophilus somnus 2336]
ATTGCATATTTATTCAAA
>HSM_1540(argR) Score=4.1 Pos=-83 [Haemophilus somnus 2336]
TAAGAATATAAATATAAA
>HSM_1540(argR) Score=4.5 Pos=-51 [Haemophilus somnus 2336]
TTTGCATTTTTATGCAGC
# TF - NrdR: HSM_1535
>HSM_0537(nrdD) Score=4.3 Pos=-25 [Haemophilus somnus 2336]
ACGCAACATATAGGTT
>HSM_0537(nrdD) Score=5 Pos=-56 [Haemophilus somnus 2336]
TAACAATATATAGTGA
>HSM_0537(nrdD) Score=5.6 Pos=-87 [Haemophilus somnus 2336]
ACACAATATATAGTGG
>HSM_0366(nrdA) Score=5.3 Pos=-47 [Haemophilus somnus 2336]
TAACTATATCTTGTGT
>HSM_0366(nrdA) Score=5 Pos=-78 [Haemophilus somnus 2336]
ACACATTATCTTGTAG
# TF - FadR: HSM_0971
>HSM_1266(fadL) Score=4.5 Pos=-163 [Haemophilus somnus 2336]
TACTAATCCGACCACTT
>HSM_0477(fadL) Score=6 Pos=-105 [Haemophilus somnus 2336]
AACTGATCTGACCTCTT
>HSM_1385(fabA) Score=4.2 Pos=-212 [Haemophilus somnus 2336]
GACTGCTCCGATAAGTT
# TF - IscR: HSM_0153
>HSM_1296(erpA) Score=5.3 Pos=-64 [Haemophilus somnus 2336]
AATCTTGAATGGTTTGGTTGGTTAT
>HSM_0510(nfuA) Score=6 Pos=-43 [Haemophilus somnus 2336]
ATTCCTGATAATTTTACTCAAGTAT
>HSM_0153(iscR) Score=5.2 Pos=-65 [Haemophilus somnus 2336]
GAAGTTGACTAATTTAGTAGGATTA
# TF - SiaR: HSM_1107
>HSM_1505(nagB) Score=5.2 Pos=-56 [Haemophilus somnus 2336]
TCTGAAATAAAACTTCATT
>HSM_1112(siaP) Score=4.4 Pos=-106 [Haemophilus somnus 2336]
TCTGAAATAAAACTCTATA
>HSM_1112(siaP) Score=4.1 Pos=-156 [Haemophilus somnus 2336]
TTTGGTGTTTTACTCCAGA
>HSM_1111(neuA) Score=4.1 Pos=-95 [Haemophilus somnus 2336]
TCTGGAGTAAAACACCAAA
>HSM_1111(neuA) Score=4.4 Pos=-145 [Haemophilus somnus 2336]
TATAGAGTTTTATTTCAGA
# TF - Fur: HSM_0352
>HSM_1962(irp) Score=4.7 Pos=-71 [Haemophilus somnus 2336]
AAAAATGATTATTGTTTTT
>HSM_1250(fbpA) Score=4.2 Pos=-93 [Haemophilus somnus 2336]
AAGAATAATTCTTATTGAC
>HSM_1102(exbB) Score=4.6 Pos=-55 [Haemophilus somnus 2336]
GAAATTAATTCTCAATAAC
>HSM_0047(cjrC) Score=4.6 Pos=-107 [Haemophilus somnus 2336]
AATAATAATAAAAATTATT
>HSM_0047(cjrC) Score=5.1 Pos=-104 [Haemophilus somnus 2336]
AATAATAAAAATTATTATC
>HSM_0047(cjrC) Score=5 Pos=-98 [Haemophilus somnus 2336]
AAAAATTATTATCATTAAT
>HSM_1170(hugX) Score=5.1 Pos=-123 [Haemophilus somnus 2336]
AAAAATTATAATAATTATC
>HSM_1170(hugX) Score=4.3 Pos=-57 [Haemophilus somnus 2336]
ACAATTAAGAATAATTATC
>HSM_1170(hugX) Score=4.9 Pos=-51 [Haemophilus somnus 2336]
AAGAATAATTATCATTTAT
>HSM_0199(sitA) Score=4.2 Pos=-103 [Haemophilus somnus 2336]
GATAATTATTGCTATTTAC
>HSM_0932(hpuB) Score=4.1 Pos=-37 [Haemophilus somnus 2336]
ATTAATAAGATTGATTCTT
>HSM_0932(hpuB) Score=4.5 Pos=-31 [Haemophilus somnus 2336]
AAGATTGATTCTTATTTTT
>HSM_1988(hpuB) Score=4.5 Pos=-108 [Haemophilus somnus 2336]
AATTATAAGAACCATTCTC
# TF - TrpR: HSM_1017
>HSM_1416(aroG) Score=5.6 Pos=-104 [Haemophilus somnus 2336]
GAAATTAGTTTACTAGTACA
>HSM_1017(trpR) Score=5.5 Pos=-29 [Haemophilus somnus 2336]
TACACTAGTTTAATAGTCAG
>HSM_1315(trpE) Score=6.4 Pos=-52 [Haemophilus somnus 2336]
CGCACTAGTTTAATAGTTCA
>HSM_0462(mtr) Score=6.3 Pos=-49 [Haemophilus somnus 2336]
TGAACTATTATAATAGTTCA
# TF - UxuR: HSM_1913, HSM_0414
>HSM_1914(HI0053) Score=5.1 Pos=-101 [Haemophilus somnus 2336]
AAATTGGAATACCAAAAA
>HSM_0414(uxuR) Score=4.5 Pos=-68 [Haemophilus somnus 2336]
AATTTGGTGAACCAGAAA
>HSM_1913(uxuR) Score=5.1 Pos=-78 [Haemophilus somnus 2336]
TTTTTGGTATTCCAATTT
>HSM_0413(uxuB) Score=4.8 Pos=-199 [Haemophilus somnus 2336]
TTTCTGGTTCACCAAATT
>HSM_0414(uxuR) Score=5.2 Pos=-196 [Haemophilus somnus 2336]
AAACTGGTAAACCAGTTA
>HSM_0413(uxuB) Score=5.3 Pos=-71 [Haemophilus somnus 2336]
TAACTGGTTTACCAGTTT
>HSM_0411(uidA) Score=5.6 Pos=-119 [Haemophilus somnus 2336]
AAATTGGTTTACCAAAAA
# TF - PurR: HSM_1510
>HSM_1081(purE) Score=5.6 Pos=-68 [Haemophilus somnus 2336]
CCGCAATCGTTTGCTT
>HSM_0473 Score=5.1 Pos=-71 [Haemophilus somnus 2336]
TCGAAAACGATTGCCT
>HSM_1395(cvpA) Score=6 Pos=-69 [Haemophilus somnus 2336]
ACGCAAACGTTTTCCT
>HSM_0385(purH) Score=5.8 Pos=-61 [Haemophilus somnus 2336]
GAGCAAACGTTTGCGT
>HSM_0952(yjcD) Score=5.5 Pos=-82 [Haemophilus somnus 2336]
ACGCAAACGTTTACTA
>HSM_0498(purL) Score=5.8 Pos=-74 [Haemophilus somnus 2336]
AGGCAAACGTTTTCGT
>HSM_0251(purC) Score=5.5 Pos=-75 [Haemophilus somnus 2336]
ATGTAAACGTTTGCTT
# TF - RbsR: HSM_0094
>HSM_0089(rbsD) Score=5.9 Pos=-72 [Haemophilus somnus 2336]
TAATCGAAACGTTTCGATGA
# TF - LexA: HSM_0711
>HSM_1015(impA) Score=5.5 Pos=-77 [Haemophilus somnus 2336]
ATATGTATATAAAAACAGTA
>HSM_0315(recA) Score=5.2 Pos=-66 [Haemophilus somnus 2336]
CACTGTATGTGAATACAGTA
>HSM_1015(impA) Score=5.7 Pos=-51 [Haemophilus somnus 2336]
ACCTGTATAAATAATCAGTT
>HSM_1774(uvrD) Score=6 Pos=-31 [Haemophilus somnus 2336]
AACTGTATAAAAACACAGTT
>HSM_1049(uvrA) Score=5.4 Pos=-97 [Haemophilus somnus 2336]
AACTGGATATTTGCACAGTT
>HSM_1048 Score=5.4 Pos=-101 [Haemophilus somnus 2336]
AACTGTGCAAATATCCAGTT
>HSM_0991(recN) Score=5.6 Pos=-57 [Haemophilus somnus 2336]
TACTGTATATAAAAACATAT
>HSM_0711(lexA) Score=5.4 Pos=-26 [Haemophilus somnus 2336]
TTCTGTATATAAAAACAGGG
>HSM_0991(recN) Score=5.2 Pos=-33 [Haemophilus somnus 2336]
AATTGTATTTATATACAGTA
>HSM_0711(lexA) Score=4.9 Pos=-47 [Haemophilus somnus 2336]
TTCTGTATATAATATCATAT
>HSM_0142(ruvA) Score=5.6 Pos=-65 [Haemophilus somnus 2336]
AACTGGATATTTATCCAGTT
# RNA - L10_leader
>HSM_0038(rplJ) Score=20.1 Pos=-194 [Haemophilus somnus 2336]
TGACCTCTCAAGCCCCGTCCAAGACCGTAGGGGAAAGAGTATTTCTTAATAATCCTACGTAGATGGTGATACAGAATAAGAATTTTTCTTGCTTCTGTGCACCTTAGCCTCAGAGAAGACTGCAAAAGTGCGGTGTTTTTTTGAGAAGTTTTATAATTCCGATCAA
# RNA - Lysine
>HSM_1255(lysW) Score=134.1 Pos=-258 [Haemophilus somnus 2336]
ACATATGTAGAGGTGCGGCTGTTATAAGTAATTTTTTGAGTGGATAACGATGAAAAAAATGAAAGGAATAGTTGCCGAAATCAATTAAAAGTCATTTTAATTGGTTGGGGGCGTATTCGAAAGAAACGTCACTGTCATAGTATTTATCCACTATGGAGCGCTACTGGTTAGGT
# RNA - FMN
>HSM_1983(ribB) Score=129.9 Pos=-252 [Haemophilus somnus 2336]
TGCATTCTCAGGGCAGGGTGAAACTCCCTACCGGTGGTAAATATTTCGATATAAGCCCACGAGCGCTTACTTATCTTAGTAAGGTCAGCAGATTTGGTGAAAATCCAAAGCCGACAGTGATAGTCTGGATGAAAGAGAATAGAGCG
# RNA - S15
>HSM_0776(rpsO) Score=85.2 Pos=-66 [Haemophilus somnus 2336]
CTGTCATCGCTGAGTTAGAGATCGGCGAATGATGTATTATCAACCCTTTTAGTATAAGGAATGTTTATGTCTCTAAGTACAGAAAAAAAAGCAGCTATTGTTGCTGAATTTGGTCGTGATGCG
# RNA - MOCO_RNA_motif
>HSM_1275(bisC) Score=80 Pos=-236 [Haemophilus somnus 2336]
AAAAAACTGACGACTCCGAGCTTGTTGACCTAAGTTGCAAAATAAGGTTGCAAGCCTGTAACATTGTCAAATGTTGCACATGGTATAACTAGAAATGGTTGTGCCACTCCCTTTAGAAAGGTGTCGAAAATAAAACTTT
>HSM_1509(moaA) Score=79 Pos=-124 [Haemophilus somnus 2336]
CGTTATCGCATAACTCCGAGCTTGTTTACCTAAGTTGAAAAATAAGGAAACAATGCCAGCAAATATAATTGCTCAGGGATAATATTGGAAACGACTTATCCTTTCTTATTTAAAAAGGTGTCTAATGCAAAGATCT
# RNA - Thr_leader
>HSM_0349(thrA) Score=42.1 Pos=-159 [Haemophilus somnus 2336]
CACTTTTTCTATTACCACGATGATTATTACCATTAAGATGATTAATGGCGTGGGCTAGTGCATAAAAAATAGGATTTACAAAGCCCGCCTCGTAAAAAAGTGCGGGTTTTTTTATTAA
# RNA - Glycine
>HSM_0760(glyP) Score=29.1 Pos=-293 [Haemophilus somnus 2336]
TGAAGGTAGCTGGAGAATGGGGAATTGACCCCAAACCGACGAGGTAAAATCTTTCAGGTGCGATGGCGAGGACTGTTACTGG
>HSM_0760(glyP) Score=62 Pos=-212 [Haemophilus somnus 2336]
GACGAACCCTTGGAGAGATCCAATGTGCAATGCACAAAATGGACGCCGAAGGCGCAAAAGAGCGGTGTTTTTTACTGCTTTTCAAACGCTCAGGCAAAAGGACAGGGGCAAAAGATT
# RNA - TPP
>HSM_1488(thiB) Score=64.8 Pos=-156 [Haemophilus somnus 2336]
TCCGACTTAGTCGGGGTGCTGATAACAGCTGAGATAATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAATGGTCTTACTCC
# TF - NarP: HSM_1935
>HSM_0381(pckA) Score=4 Pos=-51 [Haemophilus somnus 2336]
TACCACTAAATGATTA
>HSM_1613(eno) Score=3.9 Pos=-35 [Haemophilus somnus 2336]
TACTTATTTTAGATTA
>HSM_0782(frdA) Score=4 Pos=-108 [Haemophilus somnus 2336]
TAACAAAAAAGAGTTA
>HSM_0718(ccmA) Score=3.8 Pos=-96 [Haemophilus somnus 2336]
TACAACTAAAGAGTTA
>HSM_0129(cydA) Score=3.7 Pos=-219 [Haemophilus somnus 2336]
TTACTTTTAGTAGTAA
>HSM_0129(cydA) Score=4.5 Pos=-197 [Haemophilus somnus 2336]
TACCGTTTTTGGGTTA
>HSM_0492(napD) Score=4.5 Pos=-139 [Haemophilus somnus 2336]
TACTCATTTTTGGTTA
>HSM_1119(lctP) Score=4.3 Pos=-193 [Haemophilus somnus 2336]
TAATCATTAAGAGGTA
# TF - GntR: HSM_0170
>HSM_0703(idnD) Score=5.3 Pos=-189 [Haemophilus somnus 2336]
AAAAGTTACCAATAACACTT
>HSM_0703(idnD) Score=6.1 Pos=-37 [Haemophilus somnus 2336]
ATATGTTACCAGTAACAGAA
>HSM_0704(gntK) Score=6.1 Pos=-227 [Haemophilus somnus 2336]
TTCTGTTACTGGTAACATAT
>HSM_0704(gntK) Score=5.3 Pos=-75 [Haemophilus somnus 2336]
AAGTGTTATTGGTAACTTTT
# TF - CueR: HSM_1728
>HSM_1725(COG3019) Score=4.9 Pos=-66 [Haemophilus somnus 2336]
ACCTTAACCCTAGGTTAAGCT
>HSM_1728(cueR) Score=4.4 Pos=-72 [Haemophilus somnus 2336]
ACCTTGCGTTAGGGTCAAGGA
# TF - CadR-PbrR: HSM_1741
>HSM_1740(czcD) Score=5.7 Pos=-62 [Haemophilus somnus 2336]
ACCCTGTAATGACTACGGAGT
# TF - GalR
>HSM_0108(galT) Score=6.3 Pos=-52 [Haemophilus somnus 2336]
ATTTGTAATCGTTTACATTT
>HSM_0105(mglB) Score=6.3 Pos=-148 [Haemophilus somnus 2336]
TTATGAAATCGTTTTCATAA
# TF - MetJ: HSM_0768
>HSM_0387(metK) Score=6.9 Pos=-66 [Haemophilus somnus 2336]
AGCCGTCTAGACGTTA
>HSM_0387(metK) Score=6.5 Pos=-58 [Haemophilus somnus 2336]
AGACGTTAAAACATCT
>HSM_0768(metJ) Score=7 Pos=-83 [Haemophilus somnus 2336]
AGCTATCTAGAAGTCT
>HSM_0768(metJ) Score=5.8 Pos=-75 [Haemophilus somnus 2336]
AGAAGTCTAGATTGTT
>HSM_1561(metX) Score=6.4 Pos=-119 [Haemophilus somnus 2336]
GGCTGTCTAGATGTTT
>HSM_1561(metX) Score=6.2 Pos=-111 [Haemophilus somnus 2336]
AGATGTTTGGATGGCT
>HSM_1293(metE) Score=8.3 Pos=-52 [Haemophilus somnus 2336]
AGACGTTTAGACGTCT
>HSM_0571(metN) Score=7.8 Pos=-61 [Haemophilus somnus 2336]
AGCAATCTAGACGTCT
# TF - MetR: HSM_1538
>HSM_1047(metF) Score=4.5 Pos=-199 [Haemophilus somnus 2336]
ACAAAAAAATTTCAT
>HSM_1047(metF) Score=5.5 Pos=-111 [Haemophilus somnus 2336]
ATGAATTTAATTCAT
>HSM_1293(metE) Score=5.2 Pos=-129 [Haemophilus somnus 2336]
ATTAATTTTTTTCAT
>HSM_0382(glyA) Score=5.4 Pos=-112 [Haemophilus somnus 2336]
ATGAAATTTTTTCAT
# TF - TtrR: HSM_1379
>HSM_1378(ttrS) Score=6.4 Pos=-96 [Haemophilus somnus 2336]
ACCATTGTGGTTTTCCACATAAAA
>HSM_1377(ttrB) Score=6.4 Pos=-179 [Haemophilus somnus 2336]
TTTTATGTGGAAAACCACAATGGT