# TF - TyrR: MS0762 >MS0762(tyrR) Score=5.8 Pos=-30 [Mannheimia succiniciproducens MBEL55E] ATGTAAATAAAAGTTGCCAT >MS1104(aroF) Score=5.8 Pos=-47 [Mannheimia succiniciproducens MBEL55E] ATGTACATATAAATTTACAT >MS0977(tyrP) Score=5.5 Pos=-40 [Mannheimia succiniciproducens MBEL55E] CCGTAAAAAAATAATTACAT # TF - FabR: MS0153 >MS1591(fabB) Score=4.9 Pos=-60 [Mannheimia succiniciproducens MBEL55E] AGCTAACAAATGTAAGTT >MS1194(fabA) Score=5.5 Pos=-111 [Mannheimia succiniciproducens MBEL55E] AGCGAACACTTGTTAGCT >MS2265(lcfH) Score=5.4 Pos=-44 [Mannheimia succiniciproducens MBEL55E] AGCGTACAAATGTAAACT # TF - ArgR: MS1267 >MS0219(artP) Score=5.4 Pos=-68 [Mannheimia succiniciproducens MBEL55E] ATTGCATAATTATGCAAA >MS0233(argE) Score=4.8 Pos=-65 [Mannheimia succiniciproducens MBEL55E] AATGATTAATTATGCTAT >MS0233(argE) Score=4.8 Pos=-44 [Mannheimia succiniciproducens MBEL55E] TCTGCATAATTATTTAAA >MS0235(argC) Score=5.1 Pos=-53 [Mannheimia succiniciproducens MBEL55E] ATAGCATAATTAATCATT >MS0235(argC) Score=4.9 Pos=-74 [Mannheimia succiniciproducens MBEL55E] TTTAAATAATTATGCAGA >MS1267(argR) Score=5.2 Pos=-50 [Mannheimia succiniciproducens MBEL55E] TTTGAATTTTTATGCAAA >MS0754(argA) Score=5.1 Pos=-52 [Mannheimia succiniciproducens MBEL55E] AATGAATATAAATTCAAA >MS0754(argA) Score=4.6 Pos=-31 [Mannheimia succiniciproducens MBEL55E] AGTGAATAATTATATAAA >MS0782(argD) Score=5.2 Pos=-72 [Mannheimia succiniciproducens MBEL55E] TTTGACTAATTATTCAAT # TF - NrdR: MS1375 >MS0633(nrdD) Score=4.6 Pos=-22 [Mannheimia succiniciproducens MBEL55E] ACACTACATATAGATT >MS0633(nrdD) Score=4.8 Pos=-54 [Mannheimia succiniciproducens MBEL55E] TTTCTATATATAGTGT >MS0992(nrdA) Score=4.5 Pos=-41 [Mannheimia succiniciproducens MBEL55E] ACCCACTATCTTGTAG >MS0992(nrdA) Score=4.9 Pos=-10 [Mannheimia succiniciproducens MBEL55E] CTTCTATATATTGTGT # TF - FadR: MS0431 >MS0638(fadL) Score=6.2 Pos=-120 [Mannheimia succiniciproducens MBEL55E] TACTGGTCTGAACTCTT >MS1194(fabA) Score=6.1 Pos=-130 [Mannheimia succiniciproducens MBEL55E] AACTGGTCTGAACAGAT # TF - IscR: MS1727 >MS1307(erpA) Score=5.7 Pos=-73 [Mannheimia succiniciproducens MBEL55E] TTGGTTGAACGAATTAGTCGGTTAT >MS2232(nfuA) Score=5.7 Pos=-59 [Mannheimia succiniciproducens MBEL55E] ATTCCCGACTATGTTAGTCAGCTAT >MS1727(iscR) Score=6.2 Pos=-69 [Mannheimia succiniciproducens MBEL55E] ATAGTTGACTAATTTACTTGGTTAT # TF - Fur: MS0859 >MS0515(exbB) Score=4.2 Pos=-70 [Mannheimia succiniciproducens MBEL55E] GAAATTCATTCTCAATTAT >MS1201(fhuC) Score=4.5 Pos=-17 [Mannheimia succiniciproducens MBEL55E] AATAATGAGAATAAATTTT >MS0683(hpt) Score=4.6 Pos=-240 [Mannheimia succiniciproducens MBEL55E] TTAAATGATAATAATTCTT >MS0683(hpt) Score=4.6 Pos=-234 [Mannheimia succiniciproducens MBEL55E] GATAATAATTCTTATTGAC >MS1819(nrfA) Score=4.2 Pos=-294 [Mannheimia succiniciproducens MBEL55E] GTAAATGATTCTAACTTTT >MS1819(nrfA) Score=4.6 Pos=-84 [Mannheimia succiniciproducens MBEL55E] GATAAAAATTCTCATTTTT >MS0792(ceuB) Score=4.1 Pos=-29 [Mannheimia succiniciproducens MBEL55E] AGAATTAAAAATAATTCTC >MS0792(ceuB) Score=4.7 Pos=-23 [Mannheimia succiniciproducens MBEL55E] AAAAATAATTCTCATTTGT # TF - TrpR: MS1566 >MS1153(trpB) Score=6.7 Pos=-52 [Mannheimia succiniciproducens MBEL55E] TGTACTAGTTTAATAGTATA >MS1566(trpR) Score=6.2 Pos=-42 [Mannheimia succiniciproducens MBEL55E] TATACTAGTTTAATAGTATG >MS1184(aroG) Score=5.9 Pos=-90 [Mannheimia succiniciproducens MBEL55E] TGTACTAGTTTACCAATGCA >MS1895(mtr) Score=6.3 Pos=1 [Mannheimia succiniciproducens MBEL55E] TGTACTACTATAATAGTTCA >MS1149(trpE) Score=6.9 Pos=-50 [Mannheimia succiniciproducens MBEL55E] TGTACTAGTTTAATAGTGCA # TF - UxuR: MS0538 >MS0542(uxuP) Score=6 Pos=-69 [Mannheimia succiniciproducens MBEL55E] AAATTGGTAAACCAATAT >MS0541(uxuQ) Score=5 Pos=-178 [Mannheimia succiniciproducens MBEL55E] CAAATGGTATACCAAAAT >MS0541(uxuQ) Score=6.1 Pos=-63 [Mannheimia succiniciproducens MBEL55E] ATATTGGTTTACCAATTT # TF - KdgR: MS0562 >MS0698(oglP) Score=6.1 Pos=-155 [Mannheimia succiniciproducens MBEL55E] AATTAAAATAATGTTTTATTT >MS0561(oglO) Score=5.1 Pos=-208 [Mannheimia succiniciproducens MBEL55E] ATTAAAAATAAAATTTTAGAA >MS0562(kdgR) Score=5.9 Pos=-126 [Mannheimia succiniciproducens MBEL55E] ATATAAAACATAATTTCATTT >MS1742(pelX) Score=4.8 Pos=-124 [Mannheimia succiniciproducens MBEL55E] TAATAAAATAAAACATTATTT >MS1741(togX) Score=6.1 Pos=-99 [Mannheimia succiniciproducens MBEL55E] AAATAAAACAATGTTTTAAAT >MS1742(pelX) Score=6.1 Pos=-119 [Mannheimia succiniciproducens MBEL55E] AAATAAAACATTATTTCAAAT >MS0561(oglO) Score=5.9 Pos=-170 [Mannheimia succiniciproducens MBEL55E] TTTTAAAATATTGTTTTATTT >MS0561(oglO) Score=5.3 Pos=-107 [Mannheimia succiniciproducens MBEL55E] ATTTGACATAGTGTTTCAATT >MS0563(kduD) Score=5.9 Pos=-88 [Mannheimia succiniciproducens MBEL55E] AAATGAAATTATGTTTTATAT # TF - FruR: MS1317 >MS2379(manX) Score=4.8 Pos=-54 [Mannheimia succiniciproducens MBEL55E] GCTGAAACGTTTTATC # TF - PurR: MS1063 >MS1033(purE) Score=6 Pos=-84 [Mannheimia succiniciproducens MBEL55E] TCGCAAACGTTTGCCT >MS1744(rpiA) Score=6 Pos=-150 [Mannheimia succiniciproducens MBEL55E] ACGCAAACGTTTACGT >MS0575(xanP) Score=6.3 Pos=-67 [Mannheimia succiniciproducens MBEL55E] ACGCAAACGTTTGCTT >MS1002(cvpA) Score=6.1 Pos=-86 [Mannheimia succiniciproducens MBEL55E] ACGCAAACGTTTTCTT >MS1481(purC) Score=5.7 Pos=-70 [Mannheimia succiniciproducens MBEL55E] ATGCAAACGTTTGCAT >MS1806(purL) Score=6 Pos=-77 [Mannheimia succiniciproducens MBEL55E] AAGCAAACGTTTTCGT >MS0626(purM) Score=5.6 Pos=-74 [Mannheimia succiniciproducens MBEL55E] TCGCAAACGATTACGT >MS1297(purH) Score=6 Pos=-64 [Mannheimia succiniciproducens MBEL55E] GCGCAAACGTTTGCGT >MS0802(yjcD) Score=4.7 Pos=-68 [Mannheimia succiniciproducens MBEL55E] TGGCAATCGTTTACTA >MS1852(folD) Score=5.2 Pos=-40 [Mannheimia succiniciproducens MBEL55E] TAGCAAACGTTTACGG # TF - ModE: MS1344 >MS1344(modE) Score=5.5 Pos=-107 [Mannheimia succiniciproducens MBEL55E] TTCGCTATTTATCCAATTATATAATGAA >MS1342(modA) Score=6.4 Pos=-46 [Mannheimia succiniciproducens MBEL55E] TTCATTATATAATTGGATAAATAGCGAA >MS1021(moaA) Score=6.2 Pos=-254 [Mannheimia succiniciproducens MBEL55E] TCTGTTATATACATTTATATATAACTGA # TF - LexA: MS0744 >MS2243(recA) Score=5.8 Pos=-69 [Mannheimia succiniciproducens MBEL55E] TACTGTATATTATACCAGTT >MS0831(impA) Score=5.2 Pos=-66 [Mannheimia succiniciproducens MBEL55E] ATCTGTTTGTTTATACAGTA >MS0831(impA) Score=5.7 Pos=-40 [Mannheimia succiniciproducens MBEL55E] ACCTGTATAAACAAACAGTT >MS0744(lexA) Score=4.6 Pos=-11 [Mannheimia succiniciproducens MBEL55E] TCCTGTATATAATGTCAGCA >MS0586(uvrA) Score=5.6 Pos=-79 [Mannheimia succiniciproducens MBEL55E] AACTGGATATTTTCACAGTT >MS0585(ssb) Score=5.2 Pos=-92 [Mannheimia succiniciproducens MBEL55E] AACTGTGAAAATATCCAGTT >MS1368(uvrD) Score=5.1 Pos=-31 [Mannheimia succiniciproducens MBEL55E] CCCTGTAAAAATAAACAGAT >MS0741(recN) Score=5.5 Pos=-54 [Mannheimia succiniciproducens MBEL55E] TACTGTATAAAAAAACATAA >MS0744(lexA) Score=5.1 Pos=9 [Mannheimia succiniciproducens MBEL55E] TTCTGTACAAAAAAACAGGG >MS0712(ruvA) Score=5 Pos=-65 [Mannheimia succiniciproducens MBEL55E] AACTGGTTATCTATCCAGTT # RNA - Leu_leader >MS0599(leuA) Score=26.6 Pos=-181 [Mannheimia succiniciproducens MBEL55E] TTTTATCTTTATGTTTTCAATATCATCTTTATCTCTCAACTTATTACTCCTCTCACATTCTGTGTGCGGCTAATCGGTTGTGGATAAAAAACGGCAAATGTAAAGATTCCATAAATTAAAACCCGCACTTCAAAATGGCGGGTTTTTTC # RNA - His_leader >MS1893(hisG) Score=73.1 Pos=-181 [Mannheimia succiniciproducens MBEL55E] CTCATCACCATCATCACCCTGATTGATCTTTCGGGCGTTTTGTGGTGTTCGGAAGAAAAGAAAACTTCCGGGCAAGTGTGGAAACAGGATTGCTAAACCTCTCGGAAGGAAACTTTCGGGAGGTTTTTTTA # RNA - Lysine >MS1321(lysW) Score=134 Pos=-267 [Mannheimia succiniciproducens MBEL55E] CTACACATGTAGAGGTGCGAATATTATAAGTATTTTTCCAGAGTGGATAACAATGAAGGAAATTGAAAGGAATATTTGCCGAAATCAGTTAAGCGTCATCTTAACTGGTTGGTAACGTCACCGAAAGGAACGTTACTGCCATAGTCATTTTTGATTAACTATGGAGCGCTACTCGTGGG # RNA - PreQ1 >MS1855(queC) Score=55 Pos=41 [Mannheimia succiniciproducens MBEL55E] AATTCGTGGTTCGAAAACCTCCCACGCAAAAAAACTAAGGAAAACG # RNA - FMN >MS0172(ribB) Score=117.3 Pos=-248 [Mannheimia succiniciproducens MBEL55E] GGCATTCTCAGGGCAGGGTGAAATTCCCTACTGGTGGTATATGTTTACATAAGCCCACGAGCGCCTATTTTTATGTGATGTAGAATTAGGGTCAGCAGATTTGGTGAGATTCCAAAGCCAACAGTTAAAGTCTGGATGAAAGAGAATAAAAAA # RNA - S15 >MS0699(rpsO) Score=109.8 Pos=-63 [Mannheimia succiniciproducens MBEL55E] GTCGTAGCTGAATTAGAGATCGGCAAACGATGTACTATTAACTTACTTTTTAGGAGTAATAAAATGTCTCTAAGCGTAGAAAAAAAAGCTGCAATCGTAGCTGAATTCGGTCGTGATGCAAA # RNA - MOCO_RNA_motif >MS1021(moaA) Score=74.5 Pos=-137 [Mannheimia succiniciproducens MBEL55E] GAAATTTTATATACCGAGCTTGTACGCCTAAGTTTTTAAATTTATTTGAAAATAAGGCGGCAATGCCAGCAATGAATTTTATTGCTCAGGGATAATGTGGGAAACGACTTATCCTCTCATCTTCAGAAAGGTATCAAATGCAATCTATTCC # RNA - Thr_leader >MS1703(thrA) Score=44.5 Pos=-161 [Mannheimia succiniciproducens MBEL55E] AACAATAGCACAATGATTATGACCACCATTATGATTACCATTACGATGTGTAACTGGGTGGGTTAGTGCGTTCTAAATAAAAAATACATGAAACCCGCAACTTATGCGGGTTTTTTTTATA # RNA - Glycine >MS0353(glyP) Score=31.2 Pos=-311 [Mannheimia succiniciproducens MBEL55E] GATGAAGGTAGCTGGAGAGTGGGGAATTAACCCTACGCCGACGATGAAAAATCTTTCAGGCGCAAAGTAATTTGCAAGGACTGTTACT >MS0353(glyP) Score=62.2 Pos=-224 [Mannheimia succiniciproducens MBEL55E] TGGACGAACCCTTGGAGAGATCCAATGTGCTTAGCACAAAATGGACGCCGAAGGCGCAAAAGTGCGGTCAATTTTGACCGATTTTCTTGAAACGCTCAGGCAAAAGGACAGGGGCAAGAGA # RNA - TPP >MS0677(thiD) Score=64.9 Pos=-234 [Mannheimia succiniciproducens MBEL55E] TCCTCATTAGTCGGGGTGCTGCATTTTGCGGCTGAGATAATACCCGTGAACCTGAAACAGCTAATACTGGCGTAGGGAACTAACCGCAAGCCTTT >MS1526(thiB) Score=60.9 Pos=-136 [Mannheimia succiniciproducens MBEL55E] TCTGTTCTCAACGGGGTGCTTCTTCGGAGGCTGAGAGAAACTCGTAGAACCTGATCTGATTAATTACAGCGTAGGGATTTGAGAAAGGTTAAATA >MS1370(afuA) Score=59.5 Pos=-272 [Mannheimia succiniciproducens MBEL55E] GCCGTTAGTCGGGGTGCTTAAATTAGCTGAGAAAATACCCGTGAACCTGATACAGTTAACACTGGCGTAGGAAACTAATCAATCTATTGAGA # TF - NarP: MS0278 >MS0256(eno) Score=3.9 Pos=-34 [Mannheimia succiniciproducens MBEL55E] TACCCATTTTAGATTA >MS2293(pckA) Score=4.5 Pos=-80 [Mannheimia succiniciproducens MBEL55E] TAACATTTTTTAGGTA >MS0291(hcp) Score=4.4 Pos=-156 [Mannheimia succiniciproducens MBEL55E] TACCTGTTAAGAGGTA >MS1819(nrfA) Score=4.2 Pos=-268 [Mannheimia succiniciproducens MBEL55E] TAACTAATTTAAGTTA >MS1819(nrfA) Score=4.6 Pos=-254 [Mannheimia succiniciproducens MBEL55E] TAACTATAAAGAGGTA >MS1504(arcA) Score=4.1 Pos=-32 [Mannheimia succiniciproducens MBEL55E] TAACTAATTTTTATTA >MS0715(cydA) Score=4.4 Pos=-133 [Mannheimia succiniciproducens MBEL55E] TAACTTTATGGGGTGA >MS0601(ccmA) Score=4.1 Pos=-103 [Mannheimia succiniciproducens MBEL55E] CACCTCTAAAGAGGTA >MS1877(dcuB) Score=4.3 Pos=-22 [Mannheimia succiniciproducens MBEL55E] TAACTCTTTCGGGGAA >MS0400(focA) Score=4.3 Pos=-206 [Mannheimia succiniciproducens MBEL55E] TTACTCTATTTGGGTA >MS2283(napF) Score=4.4 Pos=-91 [Mannheimia succiniciproducens MBEL55E] TACCCCTTTCGGGTTG >MS0309(nqrA) Score=4.1 Pos=-278 [Mannheimia succiniciproducens MBEL55E] TTCCCTATTTTAGTTA >MS0309(nqrA) Score=4.2 Pos=-159 [Mannheimia succiniciproducens MBEL55E] TAATTTTATTTGGTTG >MS0587(torY) Score=4.6 Pos=-51 [Mannheimia succiniciproducens MBEL55E] TAACTATAAGTAGTTA >MS1266(mdh) Score=3.9 Pos=-42 [Mannheimia succiniciproducens MBEL55E] TACCAATTTCAAGTTA >MS1266(mdh) Score=5 Pos=-154 [Mannheimia succiniciproducens MBEL55E] TAACTATTTTTAGTTA >MS0753(lctP) Score=3.8 Pos=-172 [Mannheimia succiniciproducens MBEL55E] CACCTCTTTATTATTA >MS0293(norB) Score=4.2 Pos=-138 [Mannheimia succiniciproducens MBEL55E] TACTTATTTTTAAGTG >MS1652(frdA) Score=4.4 Pos=-155 [Mannheimia succiniciproducens MBEL55E] TCACTTTTTTGAGGTA >MS0740(ompW) Score=4.1 Pos=-78 [Mannheimia succiniciproducens MBEL55E] TAACCTATTATTGGTA # TF - NimR: MS0468 >MS0468(nimR) Score=6.7 Pos=-55 [Mannheimia succiniciproducens MBEL55E] ACTATGAAGTAACTTCAGGGT >MS0467(smtA) Score=6.7 Pos=-60 [Mannheimia succiniciproducens MBEL55E] ACCCTGAAGTTACTTCATAGT # TF - GntR: MS1242 >MS0956(idnD) Score=5.5 Pos=-167 [Mannheimia succiniciproducens MBEL55E] AACAGTTACCGATAACAATA >MS0956(idnD) Score=5.6 Pos=-36 [Mannheimia succiniciproducens MBEL55E] GTATGTTACCAGTAACCAAT >MS0957(gntK) Score=5.6 Pos=-201 [Mannheimia succiniciproducens MBEL55E] ATTGGTTACTGGTAACATAC >MS0957(gntK) Score=5.5 Pos=-70 [Mannheimia succiniciproducens MBEL55E] TATTGTTATCGGTAACTGTT # TF - NmlR: MS1385 >MS1386(adhC) Score=6.1 Pos=-59 [Mannheimia succiniciproducens MBEL55E] CTTAGAGTTTACTCTAAC >MS1385(nmlR) Score=6.1 Pos=-43 [Mannheimia succiniciproducens MBEL55E] GTTAGAGTAAACTCTAAG # TF - CueR: MS0886 >MS0887(copA0) Score=5.8 Pos=-68 [Mannheimia succiniciproducens MBEL55E] ACCTTCCCCTTAGGTCAAGGT >MS0886(cueR) Score=5.8 Pos=-55 [Mannheimia succiniciproducens MBEL55E] ACCTTGACCTAAGGGGAAGGT # TF - CadR-PbrR: MS1433 >MS1434(czcD) Score=5.3 Pos=-77 [Mannheimia succiniciproducens MBEL55E] AGTCTGTAGTAGCTACGGAGT # TF - GalR: MS0644 >MS0646(galT) Score=6.2 Pos=-100 [Mannheimia succiniciproducens MBEL55E] AAATGTAACCGTTTTCAATA >MS0644(galR) Score=5.8 Pos=-222 [Mannheimia succiniciproducens MBEL55E] TATTGAAAACGGTTACATTT >MS0644(galR) Score=5.7 Pos=-91 [Mannheimia succiniciproducens MBEL55E] AAAAGTAACCGTTTTCAATA >MS0643(mglB) Score=5.9 Pos=-161 [Mannheimia succiniciproducens MBEL55E] TTATGTAATCGTTTCCACAT # TF - RhaS: MS2322 >MS2329(rhaB) Score=8.3 Pos=-107 [Mannheimia succiniciproducens MBEL55E] ACTTTTGTTGTACTGCCA--------------TGGCAATTAGGTTAATGT # TF - MetJ: MS1966 >MS0669(metK) Score=6.2 Pos=-46 [Mannheimia succiniciproducens MBEL55E] AGCCGTCCATACGTCC >MS1966(metJ) Score=6.2 Pos=-26 [Mannheimia succiniciproducens MBEL55E] AGCAGTCTTCACGTCT >MS1966(metJ) Score=5.8 Pos=-34 [Mannheimia succiniciproducens MBEL55E] ACCTGTTTAGCAGTCT >MS1627(metB) Score=6 Pos=-121 [Mannheimia succiniciproducens MBEL55E] AGAAATTAAGATGTTT >MS0924(metX) Score=8.2 Pos=-94 [Mannheimia succiniciproducens MBEL55E] AGCCGTTTAGACGTCT >MS0434(metN) Score=7.3 Pos=-68 [Mannheimia succiniciproducens MBEL55E] AAACGTCTAGACATCT # TF - SgaR: MS0148 >MS0148(sgaR) Score=6.2 Pos=-123 [Mannheimia succiniciproducens MBEL55E] CAATGATAGCGTTATCAATA >MS0148(sgaR) Score=5.9 Pos=-89 [Mannheimia succiniciproducens MBEL55E] TTGTGATAGCGGTAACATTT >MS0149(sgaA) Score=5.9 Pos=-65 [Mannheimia succiniciproducens MBEL55E] AAATGTTACCGCTATCACAA >MS0149(sgaA) Score=6.2 Pos=-31 [Mannheimia succiniciproducens MBEL55E] TATTGATAACGCTATCATTG # TF - MetR: MS0763 >MS0941(metE2) Score=5.1 Pos=-30 [Mannheimia succiniciproducens MBEL55E] ATAAAATTTATTCAT >MS0763(metR) Score=4.5 Pos=-13 [Mannheimia succiniciproducens MBEL55E] ATGAATTATTCTAAT >MS2382(HI0736) Score=5.1 Pos=-110 [Mannheimia succiniciproducens MBEL55E] ATAAAAATAATTCAT >MS0787(metF) Score=5.3 Pos=-124 [Mannheimia succiniciproducens MBEL55E] ATTAATTAAATTCAT >MS0941(metE2) Score=4.8 Pos=-104 [Mannheimia succiniciproducens MBEL55E] ATGAATCCGTTTCAT >MS1295(glyA) Score=4.5 Pos=-103 [Mannheimia succiniciproducens MBEL55E] CTTAATTAATTTCAT