# TF - FabR2: HCH_05140
>HCH_06403(fabA) Score=5.1 Pos=-206 [Hahella chejuensis KCTC 2396]
TCTATACATCTGTATTTT
>HCH_03838(desC) Score=4.8 Pos=-61 [Hahella chejuensis KCTC 2396]
TGTGAACAACTGTATATT
# TF - FabR: HCH_04936
>HCH_00568(OLE1) Score=6.4 Pos=-51 [Hahella chejuensis KCTC 2396]
AGCGTACACTTGTACGCT
# TF - BirA: HCH_06234
>HCH_05372(COG1040) Score=8.1 Pos=30 [Hahella chejuensis KCTC 2396]
CTGTCAACC--------------GGTTAACAG
>HCH_05371(bioB) Score=8.1 Pos=-164 [Hahella chejuensis KCTC 2396]
CTGTTAACC--------------GGTTGACAG
# TF - NrtR: HCH_06996
>HCH_04328(nrtX) Score=5.6 Pos=-46 [Hahella chejuensis KCTC 2396]
TTGGTGGCTTTGAGCCACTAT
>HCH_06995(pnuC) Score=6.2 Pos=-103 [Hahella chejuensis KCTC 2396]
TTAGTGGCATTAGGCCACTAA
>HCH_06993(nadM) Score=6 Pos=-126 [Hahella chejuensis KCTC 2396]
TTAGTGTCATTATGCCACTAT
>HCH_06996(nrtR) Score=6 Pos=-41 [Hahella chejuensis KCTC 2396]
TTAGTGGCCTAATGCCACTAA
# TF - NrdR: HCH_05958
>HCH_04895(nrdJa) Score=5 Pos=-160 [Hahella chejuensis KCTC 2396]
GCACAACATATTGTGG
>HCH_04895(nrdJa) Score=4.6 Pos=-330 [Hahella chejuensis KCTC 2396]
TCGCCATATATAGGGT
>HCH_06929(nrdA) Score=4.6 Pos=-353 [Hahella chejuensis KCTC 2396]
AAACCATATATTGTGC
>HCH_06929(nrdA) Score=4.4 Pos=-385 [Hahella chejuensis KCTC 2396]
ACGCTACATCTAGTAT
# TF - SahR: HCH_01534
>HCH_01534(sahR) Score=6.7 Pos=-41 [Hahella chejuensis KCTC 2396]
ATATCAAATTTTTTTGATAT
# TF - Zur: HCH_01703, HCH_02947, HCH_00537
>HCH_00656(zbp) Score=5.7 Pos=-70 [Hahella chejuensis KCTC 2396]
GTTTCGTTATGTTATAACATAAA
>HCH_02800(yciC) Score=6.2 Pos=-59 [Hahella chejuensis KCTC 2396]
GTTTTGTTATGTTATAACATTTT
>HCH_02942(znuA) Score=6.3 Pos=-84 [Hahella chejuensis KCTC 2396]
GATATGTTACATCATAACATTTT
>HCH_02413(znuA) Score=6.3 Pos=-64 [Hahella chejuensis KCTC 2396]
ATAATGTTATGTTATAACCTTTC
>HCH_00537(zur) Score=5.3 Pos=-80 [Hahella chejuensis KCTC 2396]
CAATTGTTATAACATTACACTTC
>HCH_02943 Score=4.9 Pos=-66 [Hahella chejuensis KCTC 2396]
AAAAAGATATGATGCAACATATC
>HCH_01703(zur2) Score=5.7 Pos=-211 [Hahella chejuensis KCTC 2396]
AAAAAGATATGATATAACGTATC
>HCH_01703(zur2) Score=5.2 Pos=-206 [Hahella chejuensis KCTC 2396]
GATATGATATAACGTATCTTTAT
# TF - PdhR: HCH_01271
>HCH_01271(pdhR) Score=6.1 Pos=-305 [Hahella chejuensis KCTC 2396]
ATTGGTCATACCAGT
# TF - NorR: HCH_00715, HCH_01373
>HCH_00715(norR2) Score=4.3 Pos=-36 [Hahella chejuensis KCTC 2396]
TAGGGTTATAAAAACCCTT
>HCH_01372 Score=4.9 Pos=-158 [Hahella chejuensis KCTC 2396]
ACATGTCTTTTTGACTCAT
>HCH_01373(norR) Score=4.9 Pos=-34 [Hahella chejuensis KCTC 2396]
ATGAGTCAAAAAGACATGT
>HCH_01373(norR) Score=3.8 Pos=-15 [Hahella chejuensis KCTC 2396]
AAGAGTTTATTTGATATGA
>HCH_00714(norA) Score=4.3 Pos=-138 [Hahella chejuensis KCTC 2396]
AAGGGTTTTTATAACCCTA
# TF - PrpR: HCH_02709
>HCH_02709(prpR) Score=4.8 Pos=-74 [Hahella chejuensis KCTC 2396]
ATTGTTTACAAT
>HCH_02709(prpR) Score=4.7 Pos=-12 [Hahella chejuensis KCTC 2396]
ATTGTAAACAAT
# TF - HutC: HCH_04168
>HCH_04169(hutI) Score=5.5 Pos=-47 [Hahella chejuensis KCTC 2396]
TTAAATGTATATACATTTAT
>HCH_04169(hutI) Score=5.6 Pos=-291 [Hahella chejuensis KCTC 2396]
AAATTTGTATATACATTCAA
# TF - HypR: HCH_03168
>HCH_03166(hypO) Score=4.9 Pos=-42 [Hahella chejuensis KCTC 2396]
ATTTTATACAAT
>HCH_03167(hypE) Score=4.9 Pos=-129 [Hahella chejuensis KCTC 2396]
ATTGTATAAAAT
>HCH_03163(hypD-related, COG329 (DapA)) Score=5.3 Pos=-118 [Hahella chejuensis KCTC 2396]
ATTGTATACAAT
# TF - IscR: HCH_04462
>HCH_04462(iscR) Score=5 Pos=-59 [Hahella chejuensis KCTC 2396]
ATACTTGATCAGTTTGCAGGGTCAT
>HCH_02543(nfuA) Score=5.1 Pos=-86 [Hahella chejuensis KCTC 2396]
AAATCCTACTAATTTGCTAAGGCTT
>HCH_06242(erpA) Score=5.5 Pos=-103 [Hahella chejuensis KCTC 2396]
ATAGTTGACCGATTAAGTAGGATAA
# TF - NagQ: HCH_06978
>HCH_06984(nagB) Score=5.6 Pos=-77 [Hahella chejuensis KCTC 2396]
TGGTATTAAAAAGGTATT
>HCH_06982(nagT) Score=-0.2 Pos=-233 [Hahella chejuensis KCTC 2396]
AATACCTTTTTAATACCA
# TF - NtrC: HCH_01033
>HCH_06398(glnK) Score=4.7 Pos=-193 [Hahella chejuensis KCTC 2396]
TGCGCTATAATTGTGCC
>HCH_06398(glnK) Score=5.1 Pos=-265 [Hahella chejuensis KCTC 2396]
TGCACAAAATTTGTGCA
>HCH_01036(glnA) Score=5.1 Pos=-287 [Hahella chejuensis KCTC 2396]
GGCACCAACTTGGTGCA
>HCH_01034(ntrB) Score=4.8 Pos=-241 [Hahella chejuensis KCTC 2396]
CGCACCAAAAAAGAGCA
>HCH_04519(urtA) Score=4.7 Pos=-256 [Hahella chejuensis KCTC 2396]
TGCACCGCTTTGGTTCA
# TF - HexR2: HCH_00346
>HCH_00347(zwf) Score=5 Pos=-17 [Hahella chejuensis KCTC 2396]
AATAATTACTAC
>HCH_00432(gapA) Score=5.4 Pos=-49 [Hahella chejuensis KCTC 2396]
TATATTTACTAC
>HCH_00346(hexR) Score=-1.5 Pos=-185 [Hahella chejuensis KCTC 2396]
GTAGTAATTATT
>HCH_00433(edd) Score=-0.8 Pos=-185 [Hahella chejuensis KCTC 2396]
GTAGTAAATATA
# TF - ModE: HCH_02455
>HCH_02455(modE) Score=6.2 Pos=-80 [Hahella chejuensis KCTC 2396]
AGCGTTATATAGAATACTATATAGCGCT
# TF - LexA: HCH_02068
>HCH_05232(recA) Score=5.2 Pos=-76 [Hahella chejuensis KCTC 2396]
TGCTGTCAATTTATACAGTA
>HCH_01222(recN) Score=5.8 Pos=-41 [Hahella chejuensis KCTC 2396]
AACTGTATATATAGACAGTC
>HCH_02202(imuA) Score=5.5 Pos=-62 [Hahella chejuensis KCTC 2396]
TACTGATTTTATATACAGTA
>HCH_02068(lexA) Score=5.8 Pos=-82 [Hahella chejuensis KCTC 2396]
TACTGTATACATAAACAGAC
>HCH_05148(yebG) Score=5.5 Pos=-42 [Hahella chejuensis KCTC 2396]
AACTGTATGAATATACAGAG
>HCH_00743(uvrD) Score=5 Pos=-252 [Hahella chejuensis KCTC 2396]
GGCTGTAAAATTATCCAGTA
>HCH_05408(PF04055) Score=6 Pos=-35 [Hahella chejuensis KCTC 2396]
TACTGTACATTTAAACAGTA
# TF - LiuR: HCH_03942
>HCH_03687(bkdA1) Score=4.9 Pos=-123 [Hahella chejuensis KCTC 2396]
GTTTACGTCAACGTCACT
>HCH_03687(bkdA1) Score=5.3 Pos=-129 [Hahella chejuensis KCTC 2396]
GCTGACGTTTACGTCAAC
>HCH_03942(liuR) Score=6 Pos=-58 [Hahella chejuensis KCTC 2396]
GTTGACGTAAACGTAAAC
>HCH_03942(liuR) Score=4.9 Pos=-64 [Hahella chejuensis KCTC 2396]
TATAACGTTGACGTAAAC
# TF - PsrA: HCH_02677
>HCH_05361(acdH1) Score=5.3 Pos=-135 [Hahella chejuensis KCTC 2396]
AAGCAAACGTATGTTTCAAA
>HCH_05361(acdH1) Score=5.9 Pos=-122 [Hahella chejuensis KCTC 2396]
TTTCAAACACTTGTTTGATA
>HCH_04756(fadB) Score=5.9 Pos=-141 [Hahella chejuensis KCTC 2396]
ATTCAAACGAGCGTATGAAT
>HCH_02532(scp) Score=5.5 Pos=-200 [Hahella chejuensis KCTC 2396]
ATTCAAACAAGCGTTCGATT
>HCH_03950(etfB) Score=5.7 Pos=-402 [Hahella chejuensis KCTC 2396]
AaaCAAACgttTGTTTGAAT
>HCH_02677(psrA) Score=5.4 Pos=-41 [Hahella chejuensis KCTC 2396]
TTTCAAACACTTGTTTGGAG
>HCH_03954(etfD) Score=5.2 Pos=-242 [Hahella chejuensis KCTC 2396]
AAACAAACGTTTGTTTGAGT
>HCH_03954(etfD) Score=5.6 Pos=-246 [Hahella chejuensis KCTC 2396]
ATTCAAACAAACGTTTGTTT
>HCH_02677(psrA) Score=5.7 Pos=-54 [Hahella chejuensis KCTC 2396]
TATCAAACGTATGTTTCAAA
>HCH_05787 Score=5.9 Pos=-71 [Hahella chejuensis KCTC 2396]
TTTCAAACGAATGTTTTAAA
>HCH_05787 Score=5 Pos=-84 [Hahella chejuensis KCTC 2396]
CATAAAACGACTGTTTCAAA
# TF - RutR: HCH_01108
>HCH_02310(ppuA) Score=5.1 Pos=-111 [Hahella chejuensis KCTC 2396]
TCTTGACTACTTGGTCAGAA
>HCH_01101(ppuA) Score=5.2 Pos=-235 [Hahella chejuensis KCTC 2396]
AGTTGATCAATTGGTCAAAT
>HCH_01101(ppuA) Score=5 Pos=-208 [Hahella chejuensis KCTC 2396]
AACTGACCAGTTGGCCAAAA
>HCH_01099(xdhA) Score=5.2 Pos=-157 [Hahella chejuensis KCTC 2396]
ACCTGACCATGTAGACAAGT
>HCH_01504(ppuB) Score=5 Pos=-106 [Hahella chejuensis KCTC 2396]
ACCTGTCCGGCTGGTCATAA
# TF - PhnR: HCH_00465, HCH_03089
>HCH_03088(phnS2) Score=6.3 Pos=-51 [Hahella chejuensis KCTC 2396]
CTTCTGGTATAGACCAGAAG
>HCH_03089(phnR2) Score=5.4 Pos=-28 [Hahella chejuensis KCTC 2396]
TTTTTGGAATAGACCAGAAG
>HCH_00465(phnR1) Score=4.9 Pos=-188 [Hahella chejuensis KCTC 2396]
CATCTGGTTCGGACCAAGAT
>HCH_00466(COG1409) Score=5 Pos=-275 [Hahella chejuensis KCTC 2396]
AATCTGGTTCGTACCAGTAG
>HCH_00466(COG1409) Score=4.6 Pos=-196 [Hahella chejuensis KCTC 2396]
ATCTTGGTCCGAACCAGATG
>HCH_00465(phnR1) Score=4.9 Pos=-109 [Hahella chejuensis KCTC 2396]
CTACTGGTACGAACCAGATT
# RNA - TPP
>HCH_01612(thiB) Score=62.8 Pos=-191 [Hahella chejuensis KCTC 2396]
GGCAGTCTCATCGGGGCGCCTGACTCCGCCGCGTTCATTCGATGCGCCATTGCGCTCGAACACACGCCTGTCAGGCTGAGAGTGTACCCGTAGAACCTGATCCAGTTAATGCTGGCGTAGGAAATGAGGCCGGCAAGTCC
>HCH_00137(thiC) Score=79.7 Pos=-212 [Hahella chejuensis KCTC 2396]
ACATCTTGTCGGGGTGCCTGGAGTAACAGGCTGAGACCACAACAGTGGGGCCCGTAGAACCTGATCTGGTTAGTACCAGCGTAGGAAACAAGTAGTTCATCAAACG
# RNA - FMN
>HCH_01388(ribB) Score=116.8 Pos=-132 [Hahella chejuensis KCTC 2396]
AACTTATTCTCAGGGCAGGGTGAAATTCCCTACCGGCGGTATGTCCCCCGTGGACGAGCCCGCGAGCGCCTGCTGCAGTACAGCAGGGTCAGCAGATCCGGTGAGAGGCCGGAGCCGACGGTGACAGTCCGGATGGGAGAGAATAAGG
# TF - GntR: HCH_03544
>HCH_03539(gntX) Score=5.6 Pos=-129 [Hahella chejuensis KCTC 2396]
AAAAGTTACCGGTAACAAAT
>HCH_03539(gntX) Score=6 Pos=-103 [Hahella chejuensis KCTC 2396]
GAATGTTACCGGTAACACGC
# TF - SoxR: HCH_01441
>HCH_01442(PF03358) Score=6.5 Pos=-67 [Hahella chejuensis KCTC 2396]
ACCTAAAGTTAAGTTGAGGT
# TF - CadR-PbrR: HCH_03681
>HCH_03680(czcD) Score=5.5 Pos=-58 [Hahella chejuensis KCTC 2396]
ACCCTGTAGCGACTCCAGACT
# TF - PdxQ: HCH_01884
>HCH_01885(pdxO) Score=10.3 Pos=-104 [Hahella chejuensis KCTC 2396]
AAGTGGACCTG-(13)-AAGTGGACATT-(4)-CATATCCAATT
# TF - IolR: HCH_03302
>HCH_03296 Score=6.1 Pos=-76 [Hahella chejuensis KCTC 2396]
TTTTGCACACGGGTGCAATG
# TF - XltR: HCH_02466
>HCH_02467(xltC) Score=6.3 Pos=-203 [Hahella chejuensis KCTC 2396]
TAATGTTAACGTTAACATTC
>HCH_02467(xltC) Score=5.4 Pos=-138 [Hahella chejuensis KCTC 2396]
AGATGTCAACGTTAGCGTTC
>HCH_02467(xltC) Score=6.8 Pos=-67 [Hahella chejuensis KCTC 2396]
AAATGTTAACGTTAACATTT
>HCH_02466(xltR) Score=5.4 Pos=-180 [Hahella chejuensis KCTC 2396]
GAACGCTAACGTTGACATCT
>HCH_02466(xltR) Score=6.3 Pos=-115 [Hahella chejuensis KCTC 2396]
GAATGTTAACGTTAACATTA
# TF - MetR: HCH_01175
>HCH_01174(metE) Score=4.6 Pos=-91 [Hahella chejuensis KCTC 2396]
ATGAATTTATTTAAT
>HCH_01174(metE) Score=4.5 Pos=-70 [Hahella chejuensis KCTC 2396]
ATGAAATATTAACAT
>HCH_01175(metR) Score=4.5 Pos=-47 [Hahella chejuensis KCTC 2396]
ATGTTAATATTTCAT
>HCH_01175(metR) Score=4.6 Pos=-26 [Hahella chejuensis KCTC 2396]
ATTAAATAAATTCAT
# TF - HCH_03332: HCH_03332
>HCH_03333(PF02525) Score=10.6 Pos=-246 [Hahella chejuensis KCTC 2396]
CTATGTCCTACC-(12)-TTTTGTACCCTT-(2)-AGTACGTCATTT
# TF - Mmwyl1_0910: HCH_00707
>HCH_00706(gadB) Score=7.4 Pos=-100 [Hahella chejuensis KCTC 2396]
AATTGTACTCT-------------------TACTGTTATGC
# TF - YdcR: HCH_03523
>HCH_03522(COG0348) Score=9.2 Pos=-102 [Hahella chejuensis KCTC 2396]
ATCTGATATGGTTTT---------TTCTGAAACTGTTTG
# TF - YjiR: HCH_00190
>HCH_00191(yjiS) Score=16.2 Pos=-193 [Hahella chejuensis KCTC 2396]
TACAGAT-(18)-AACAGAA-(13)-ATCTGTT-(24)-ATCTGTA
# TF - YjiR2: HCH_06834
>HCH_06836(PF01063) Score=15.4 Pos=-148 [Hahella chejuensis KCTC 2396]
CACAGTT-(17)-TACAGTG-(13)-AACTGTA-(23)-GCCTATA