# TF - NiaR: SP_1234
>SP_2016(nadC) Score=6 Pos=-134 [Streptococcus pneumoniae TIGR4]
TACAATTGTCTTGACAATTGTC
>SP_2016(nadC) Score=5.7 Pos=-122 [Streptococcus pneumoniae TIGR4]
GACAATTGTCTTGACACTTGTT
>SP_1233(niaX) Score=6.2 Pos=20 [Streptococcus pneumoniae TIGR4]
TACTAGTGTATATGCAGTTAAA
>SP_1859(pnuC) Score=4.5 Pos=-188 [Streptococcus pneumoniae TIGR4]
TTTTACTGTAAAGACAGTTGAC
# TF - CmbR: SP_0927
>SP_2072(yvdE) Score=5.2 Pos=-64 [Streptococcus pneumoniae TIGR4]
TCCATAAAAAATGTTTATCAC
>SP_1461(tcyB) Score=4.3 Pos=-164 [Streptococcus pneumoniae TIGR4]
GAAATAGTTTTTATCTATCTC
>SP_1461(tcyB) Score=5.2 Pos=-142 [Streptococcus pneumoniae TIGR4]
TTGATAGATAAAATATATAAC
>SP_1576(metA) Score=4.6 Pos=-145 [Streptococcus pneumoniae TIGR4]
GATATAAAAATAGACTATAAC
>SP_0711(str1582) Score=4.4 Pos=-140 [Streptococcus pneumoniae TIGR4]
GCAATAAAAAATAGATATTAT
>SP_0148(gshT) Score=5.3 Pos=-99 [Streptococcus pneumoniae TIGR4]
CCCATAAAAAAAACTTATCAC
>SP_0620(gshT) Score=4.9 Pos=-100 [Streptococcus pneumoniae TIGR4]
ATGATTAAGTTTTTCTATCAC
>SP_0585(metE) Score=4.9 Pos=-218 [Streptococcus pneumoniae TIGR4]
CTTATAAGAATTACTAATAAC
# RNA - L10_leader
>SP_1355(rplJ) Score=80 Pos=-175 [Streptococcus pneumoniae TIGR4]
ATACGGTTTAAAAAAACTGCCTAAGACAGTAGGGGAGCTCGACTCATAAATATCCTACCGAGGACAAAACGTATCATGTAAAAAGAAGCGTATTGTACTTTCGTGTCTAGGTTTGGGCGCGTTTTTCTTTTTGAAAA
# RNA - TPP
>SP_2199(COG0011) Score=47.8 Pos=-174 [Streptococcus pneumoniae TIGR4]
ACATATAATATATGGGAGTCTGTGTACAGTCTGAGAGGAAGTGTTAAACTTCGACCGCACCTGATCTGGGTAATGCCAGCGGAGGGAACGATACTTAGTCTAAT
>SP_0716(tenA) Score=68.2 Pos=-302 [Streptococcus pneumoniae TIGR4]
AGAGACATTTGGGGTGCTTTAGGCTGAGATAATACCCATTGAACCTGATACAGTTAAGACTGGCGAAGGGAAATGTGAACAGTTTTTTCG
>SP_0726(thiD) Score=59 Pos=-183 [Streptococcus pneumoniae TIGR4]
AAACAACCACTAGGGGTGCGTAAAGCTGAGATTAACGACTGTTAGATCCCTCTGACTCAATCTAGGTAATGCTAGCTGATGGAAGTGGAAATGATAATGG
>SP_0719(ykoE) Score=67.7 Pos=-349 [Streptococcus pneumoniae TIGR4]
AAAGACATTTGGGGTGCTTTAGGCTGAGATGATACCCATTGAACCTGATACAGTTAAGACTGGCGAAGGGAAATGTGAAATGTTTTTTTC
# RNA - FMN
>SP_0488(ribU) Score=52 Pos=-249 [Streptococcus pneumoniae TIGR4]
CTTCTCTTTAAAGAAGTCCGTGAGCGCAAGCTGATGTGGTGAGATTCCACAACCGACAGTATAGTCTGGATGGGAGAAGACGAAAGA
>SP_0178(ribD) Score=123.7 Pos=-249 [Streptococcus pneumoniae TIGR4]
TAACTATCTTCAGGGCAGGGTGAAATTCCCTACCGGTGGTATAGCCCACGAGCCGAAAGGCATGATTTGGTGAAATTCCAAAGCCGACAGTATAGTCTGGATGAAAGAAGATAAAA
# RNA - PyrR
>SP_0701(pyrF) Score=59.4 Pos=-154 [Streptococcus pneumoniae TIGR4]
AAACCTTTAAAGCAGTCCAGAGAGGCAGCTAAGGTTAGACGGTGAAAGGGTGGAGACTACCCATTTTTCGTGGAACCTTGCTGTTGGCAGGTTCCTTTTTTCGTGG
>SP_0963(pyrK) Score=47.3 Pos=-223 [Streptococcus pneumoniae TIGR4]
CAACCTTTAAGGGGAGTCCAGAGAGACTCACAAGGTGTCAGATAAAAGAATGGTGCAATTTTCTAGAGGAGACTTTTTGAGTGTGCTCTCTTGTGTTGTACGATTTTAACTGAGGCCTTGCACTAGCAAGGTCTTTTCTTTATCT
>SP_1278(pyrR) Score=68.7 Pos=-145 [Streptococcus pneumoniae TIGR4]
ATATTCCTTTAAACCTGTCCCGTGAGGCAGGCAAGGAGCGCGATAAAGTAGAAGGGTGAAGTCTATACTGTGTGCAGTAGGGCTCGCTTGGCTATAAATTTCAAGTCTCCTTGTTTAAGGAGACTTTTCTTTTT
>SP_1275(carB) Score=21 Pos=-179 [Streptococcus pneumoniae TIGR4]
TATCTTATTTAATGTCGCCCTGAGAGGCGACGAATAGAAAGGAGAAGGGTGCTCCGTATTTGCTGAACTGAATACGGGCTACGGACGGTGCTAAAAAGATAGTTATTCCTAGAACTGACAGTTCTTCGT
>SP_1286(pyrP) Score=39.6 Pos=-109 [Streptococcus pneumoniae TIGR4]
AGGTTTTTAATGTCATCCCGTGAGGTGACGAAGACGCAGAAATATTTAAAACTCTTTAAAATCTAAATTTTAAAGAAGTCTTACTCTGAGGGCCTATTGCTGTAAAATAATGGGCTCTTTTTTGATG
# RNA - Glycine
>SP_0408(glyP) Score=58.7 Pos=-178 [Streptococcus pneumoniae TIGR4]
GACGGAACTCTGGAGAGACCGTAAAGGCACCGAAGGGGCAAGGCAGGCAACTGCTCAAACTCTCAGGTAAAAGGACAGAGCTAGGATAGA
# RNA - L13_leader
>SP_0294(rplM) Score=56 Pos=-106 [Streptococcus pneumoniae TIGR4]
GTATTGTTTACCCCATTTGAAAGGCCCCGGAACCTTCCAAATACTTTTCGATGGGAAGGAACACCCATCACCGTAAACAAAAATC
# RNA - L19_leader
>SP_1293(rplS) Score=34.3 Pos=-54 [Streptococcus pneumoniae TIGR4]
ACAGTTTATCCGCTGAGGAAGATTCCTCAAGATTGACAA
# RNA - L20_leader
>SP_0959(infC) Score=71.8 Pos=-119 [Streptococcus pneumoniae TIGR4]
GAGAAAAGCAGAAGTGAGAGCTTCTCGCCTTGTGACATTAAGTTGCCTGGCCCTACGGATGAAAAGTTTCGAAGAAACGCTATCATAACGTGCGGGCTTGTATATTTACAAGTCCGCTATTGTTTTTCTCTAA
# RNA - L21_leader
>SP_1105(rplU) Score=43.3 Pos=-122 [Streptococcus pneumoniae TIGR4]
ATCCTGTGCAACCGCACGAACATCGTTGCTTGATTATTCAAGTTTAAGTGGTTCGTCCCACGATGCTAGGCGAGTCTTCACAAAAAATC
# RNA - Purine
>SP_1847(xpt) Score=50.8 Pos=-485 [Streptococcus pneumoniae TIGR4]
AAATTGAATATCGTTTTACTTGTTTATGTCGTGAATTGGCACGACGTTTCTACAAGGTGCCGGAACACCTAACAATAAGTAAGTCAGCAGTGAGATA
# RNA - S15
>SP_1626(rpsO) Score=27.4 Pos=-61 [Streptococcus pneumoniae TIGR4]
TCTTGGTTACAGGCATGCCAACCTGTCACTCGGATGAAGCCAAATAAAAAGGAGAAACATCATGGCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAA
# TF - Rex: SP_1090
>SP_0605(fba) Score=4.5 Pos=-62 [Streptococcus pneumoniae TIGR4]
AAGTGATAAAATGAACAA
>SP_0285(adhB1) Score=5.1 Pos=-114 [Streptococcus pneumoniae TIGR4]
TTGTGATATACTTCACAT
>SP_1421(pncB) Score=4.3 Pos=-114 [Streptococcus pneumoniae TIGR4]
TTGTTACTCTTTTCTCAA
>SP_1215(forT) Score=5 Pos=-41 [Streptococcus pneumoniae TIGR4]
TTGTGATATAATTATCAA
>SP_1009(hemH) Score=5.1 Pos=-28 [Streptococcus pneumoniae TIGR4]
TTGATAAAAACATCACAA
>SP_2055(adhB2) Score=5 Pos=-96 [Streptococcus pneumoniae TIGR4]
AAGTTAAAAAAATCACAA
>SP_2026(adhE) Score=4.5 Pos=-208 [Streptococcus pneumoniae TIGR4]
TTGTGAAATAAAAAATAT
>SP_2026(adhE) Score=5.1 Pos=-190 [Streptococcus pneumoniae TIGR4]
TTGAAATAAATTTCACAA
>SP_2026(adhE) Score=5.1 Pos=-140 [Streptococcus pneumoniae TIGR4]
ATGAGAAAAGTTTCACAA
>SP_2026(adhE) Score=4.6 Pos=-96 [Streptococcus pneumoniae TIGR4]
TTATGAAACTGTTTACAA
>SP_2026(adhE) Score=5.8 Pos=-52 [Streptococcus pneumoniae TIGR4]
TTGTGAAAAAATTAACAA
>SP_1119(gapN) Score=5.2 Pos=-94 [Streptococcus pneumoniae TIGR4]
TTGTGAAAATAATCTCAA
>SP_1090(rex) Score=5 Pos=-57 [Streptococcus pneumoniae TIGR4]
TTGTTGATTTTTTCACAA
# RNA - preQ1-II
>SP_1012(queT) Score=100.7 Pos=-93 [Streptococcus pneumoniae TIGR4]
GTGCTATACTAGTAAGGTTGAATGAATCAACCCTTGGTGCTTAGCTTCTTTCACCAAGCATATTACACGCGGATAACCGCCAAAGGAGAAAAGATGAA
# RNA - yybP-ykoY
>SP_1551(atcL) Score=48.2 Pos=-148 [Streptococcus pneumoniae TIGR4]
ATGGTACTACTCAAGGGAGTAGCTGGCAGAAACCTGTGATAGTGTCGTCATTCCGAATTTTATGCTGAAAAGTATGCTTTCCGGCCCTATCTTAAACAGCGAGACTTGTTATGATTAA
# RNA - T-box(Ala)
>SP_1384(COG4894) Score=54.7 Pos=-188 [Streptococcus pneumoniae TIGR4]
TAAGAAAGTTGAGAATTGATTTTCACTTGTCTTAGTCCAGAGAAATGGCGGTGCTGCGAGCCATCTAAGCTAGGAAGTCATGCTACTCAATCATACAATTGCATAAGAACAAGAGAATGACAAGTTCATTGAATGAAGGTGGTACCGCGGTTTTTCGCCCTTCGT
# RNA - T-box(Gly)
>SP_1477 Score=40.4 Pos=-215 [Streptococcus pneumoniae TIGR4]
TATAATAGTCAGCAGGAAAGAAAGTCTTATGGCGTTCTTCAAGCGAGCTTGGGATAGTGGGAGCCAAGTAGGGCAAAATAAAGGGCTGGCGCTTTCTGTAGTATTTTCAAAAACAATGAAGTAATAAATTAGGGTGGAACCGCGTTTCTGACGCCCCTAGG
# RNA - T-box(Ile)
>SP_1659(ileS) Score=89.4 Pos=-252 [Streptococcus pneumoniae TIGR4]
GAAATATTCTGAGAACAATATCTTATCCTTATATTTCCAGCGAGCAGGAGATGGTGTGAGTCCTGTAATCCCTATTGATAAGATTATCCTCTCAAAAACTCAAGTCTGAAGCTAGTAAGATTTGACGTTTCCCACGTTACGGGATAAGAGGGAGAAAGACTAAATCTTTTTCCGAATAAAGGTGGTACCACGATTTTCGTCCTTTTT
# RNA - T-box(Phe)
>SP_0579(pheS) Score=54.9 Pos=-218 [Streptococcus pneumoniae TIGR4]
GAATCTGAAAGACTAGTAGCCCAAGGGAAGTATATCAGGGAGGAGAGCCGTGACTGCAAGCTCTCTATATGAAAGCTGGGTGAATTCACTTGCGCATGGATTTAGAAATGAAGGTCTGACTTGTCAGATGAAAACGGATGGTACCGCGTGTCAACGCTCCGAGTGG
# RNA - T-box(Ser)
>SP_0411(serS) Score=59.4 Pos=-205 [Streptococcus pneumoniae TIGR4]
AGTATAATCATAGCAACGGATAAGTAGGTTATCTTCTTCTTTCAGAAAGTCTGCGGGTACTGCGAGCAGATAGGAGGGATAGGTGAAATTCTACCGTTAGTGACAATTACATACACAATCAAGTGCACACCTGTGAAGTTGGATGGAACCGTGGCCCTGCCACTCCAACG
# RNA - T-box(Thr)
>SP_1630 Score=89.5 Pos=-168 [Streptococcus pneumoniae TIGR4]
ATAATCCATAGAGACAAGTCACTTAGTCCCTTTCTACTAGAGAGTGCGTGGTTGCTGGAAACGCATAGGAAGTCTAAACTGATACTACTCTTGAGTTTTTTATGAAAACATAAAACGGTGGCCACGTTAGAGCCGATCAGAGGTGTCCCTCTCTTTTGAGGTACATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTCGAG
# RNA - T-box(Trp)
>SP_1817(trpE) Score=92.4 Pos=-298 [Streptococcus pneumoniae TIGR4]
AATAATAGATGGAAAAATTACAGTTCTTTCTCTCACAGAGAGCTTGTGGTTGCTGAAAACAAGCAGAGAAAGCTGTAAAGTTGGGTTCATCTGAAACGAGAGAAGAAAACATCATTCTCAAGGGAGTGCCCTTTATCGCACAGCCTGTTACAGGAGATATCTGAGACAGGAATGAGAGATAGGAGAAATCCTATAATTGAGGTGGCACCGCGAATTTCGTCCTCACG
>SP_1069(trpX) Score=105.6 Pos=-299 [Streptococcus pneumoniae TIGR4]
TAACCATTCAGAAAAGTAATCATACAAACTTTTTAGAGAGTCTGTGGTAGCTGAAAACAGATAAGTGGCAATGATGAAAATTGGGCTGAATGCTATTTAGAATTTGAAATTATAAAAATTCGGTAAGCACACCTTACAGTGCATCTCGTTATTGCGAGACTGAGCGATAGGGAAATTCCCTATAATTGAGGTGGTACCGCGCATCGACGTCCTCACACA
# RNA - T-box(Val)
>SP_0565(SP_0565) Score=57.9 Pos=-371 [Streptococcus pneumoniae TIGR4]
TAGAGCCATTAGAGGTGTTTTGAATCCCACATTTTACAGAAAGTGGCGGCGCTGAGAAGTCCACAAATGTGTCAAAACTGGTTGCTAATGGATGAAAAATTGAAATAAAAGTGTCTTTTTGCTTTAAAGACGAGAGTTGCGGGCAACTGCCCGAAATTGGGTGGTACCGCGGATAAACACATTCGTCCCTGTCAT
# TF - NagR: SP_1446
>SP_1415(nagB) Score=6.5 Pos=-51 [Streptococcus pneumoniae TIGR4]
AAATTGGTCTATACCATATA
>SP_2056(nagA) Score=6.4 Pos=-95 [Streptococcus pneumoniae TIGR4]
AAATAGGTCTATACCATTTA
>SP_0266(glmS) Score=5.9 Pos=-57 [Streptococcus pneumoniae TIGR4]
GAATTAGACTATACCAATTT
>SP_0266(glmS) Score=4.9 Pos=-96 [Streptococcus pneumoniae TIGR4]
AAACAAGTATATACTGTTTT
>SP_0266(glmS) Score=5.8 Pos=-136 [Streptococcus pneumoniae TIGR4]
AATTTGAACTATACCAATTT
# TF - NanR: SP_1331, SP_1674
>SP_1331(nanR) Score=5.7 Pos=-94 [Streptococcus pneumoniae TIGR4]
TTGGAAACTAGTTTCTAA
>SP_1685(nanE) Score=5.9 Pos=-136 [Streptococcus pneumoniae TIGR4]
TCTGAAAGTACTTTTAGA
>SP_1676(nanA) Score=6.4 Pos=-158 [Streptococcus pneumoniae TIGR4]
TCTGAAACTACTTTCAAA
# TF - CelQ: SP_0473
>SP_0474(celB2) Score=6.4 Pos=-35 [Streptococcus pneumoniae TIGR4]
TTAATTTATAAAAAATAAAAAAA
>SP_0473(celQ) Score=6.4 Pos=-155 [Streptococcus pneumoniae TIGR4]
TTTTTTTATTTTTTATAAATTAA
# TF - NrdR: SP_1713
>SP_1178(ndrH) Score=4.8 Pos=-188 [Streptococcus pneumoniae TIGR4]
ACACAGGATATAGTTT
>SP_1178(ndrH) Score=5.9 Pos=-126 [Streptococcus pneumoniae TIGR4]
ACACTATATATTGTGT
>SP_0202(nrdD) Score=5.6 Pos=-75 [Streptococcus pneumoniae TIGR4]
ACACAAGATATTGATT
>SP_0202(nrdD) Score=5.4 Pos=-116 [Streptococcus pneumoniae TIGR4]
AATCAATATCTTGTGT
# TF - CopR: SP_0727
>SP_0727(copR) Score=6 Pos=-27 [Streptococcus pneumoniae TIGR4]
TAATTGACAAATGTAGATTT
>SP_0727(copR) Score=6 Pos=-67 [Streptococcus pneumoniae TIGR4]
TAATTGACAAATGTAGATTT
# TF - ArgR: SP_0893, SP_2077, SP_1203
>SP_2077(argR1) Score=3.9 Pos=-30 [Streptococcus pneumoniae TIGR4]
TAGTTATAAATATGCACG
>SP_0823(artQ) Score=4 Pos=-38 [Streptococcus pneumoniae TIGR4]
ATGTTATAATCATACAGT
>SP_0112(artP) Score=4.2 Pos=-28 [Streptococcus pneumoniae TIGR4]
AAGGAATAAACATAAAGT
>SP_0112(artP) Score=4.6 Pos=-93 [Streptococcus pneumoniae TIGR4]
ATTGAAAAAAATTACAAT
>SP_1001(aapA) Score=4.9 Pos=-71 [Streptococcus pneumoniae TIGR4]
ATTTTATAAATATTCACA
>SP_2078(argS) Score=3.9 Pos=-117 [Streptococcus pneumoniae TIGR4]
TATTTATAACTATATTTA
>SP_1394(artP) Score=4.3 Pos=-41 [Streptococcus pneumoniae TIGR4]
TCGTTATAATTATACAAA
>SP_2148(arcA) Score=4.4 Pos=-154 [Streptococcus pneumoniae TIGR4]
TATGTATAATAACATAAA
# TF - MalR: SP_2112
>SP_0758(ptsG) Score=5.9 Pos=-54 [Streptococcus pneumoniae TIGR4]
AAGTGCAAACGTTTTCGTAA
>SP_1382(amyA2) Score=6.2 Pos=-74 [Streptococcus pneumoniae TIGR4]
TTACGCAAACGTTTGCGCTA
>SP_0342(dexB) Score=5.8 Pos=-75 [Streptococcus pneumoniae TIGR4]
TTAAGCAAACGCTTGCACAA
>SP_0268(pulA) Score=5.2 Pos=-72 [Streptococcus pneumoniae TIGR4]
CAAAGAAAACGCTTGCATAT
>SP_2107(malM) Score=5.9 Pos=-65 [Streptococcus pneumoniae TIGR4]
TAACGCAAACGTTTGCGTCT
>SP_2108(malX) Score=5.5 Pos=-61 [Streptococcus pneumoniae TIGR4]
AAAGGAAAACGTTTGCGTTT
# TF - GlnR: SP_0501
>SP_0501(glnR) Score=5.9 Pos=-77 [Streptococcus pneumoniae TIGR4]
ATGTTACATTTTATAACAT
>SP_1306(gdhA) Score=5.6 Pos=-34 [Streptococcus pneumoniae TIGR4]
ATGTAATAAAATATGACAA
>SP_0610(gluQ) Score=5.7 Pos=-33 [Streptococcus pneumoniae TIGR4]
GTGTTATAAAATATAACAC
>SP_1241(glnP) Score=5.8 Pos=-92 [Streptococcus pneumoniae TIGR4]
ATGTTATATTTTCTGACAC
>SP_2148(arcA) Score=5.6 Pos=-158 [Streptococcus pneumoniae TIGR4]
ATGTTATGTATAATAACAT
# TF - NmlR: SP_1856
>SP_1856(nmlR) Score=6.9 Pos=-91 [Streptococcus pneumoniae TIGR4]
GCTTGACTTGGAGTCAACT
# TF - FabT: SP_0416
>SP_0419(fabK) Score=6.1 Pos=-63 [Streptococcus pneumoniae TIGR4]
AGTTTGACTGTCAAATT
>SP_0416(fabT) Score=5.2 Pos=-43 [Streptococcus pneumoniae TIGR4]
GTTTTGATTGTAAAAGT
>SP_0415(fabM) Score=5.1 Pos=-166 [Streptococcus pneumoniae TIGR4]
ACTTTGACAGTGAAATA
# TF - ScrR: SP_1725
>SP_1722(scrA) Score=6.2 Pos=-109 [Streptococcus pneumoniae TIGR4]
TCTGCAAAACGCTTGACATA
>SP_1724(scrB) Score=6.2 Pos=-286 [Streptococcus pneumoniae TIGR4]
TATGTCAAGCGTTTTGCAGA
# TF - SczA: SP_1858
>SP_1858(sczA) Score=5.8 Pos=-35 [Streptococcus pneumoniae TIGR4]
TATTCAGTTCTGAACA
>SP_1857(czcD) Score=5.8 Pos=-104 [Streptococcus pneumoniae TIGR4]
TGTTCAGAACTGAATA
# TF - CcpA: SP_1999
>SP_1127(yuel) Score=4.7 Pos=-55 [Streptococcus pneumoniae TIGR4]
AAGTAATCGCTTTCTT
>SP_0285(adhB1) Score=4.1 Pos=-130 [Streptococcus pneumoniae TIGR4]
TGGAAAAGGCTTTCTT
>SP_1685(nanE) Score=5.1 Pos=-63 [Streptococcus pneumoniae TIGR4]
TTGAAAGCGTTTTAAT
>SP_0754(acuB) Score=4.3 Pos=-68 [Streptococcus pneumoniae TIGR4]
ATGTAAGCGTTTGATA
>SP_1514(atpE) Score=4.3 Pos=-93 [Streptococcus pneumoniae TIGR4]
TATTAAACGCTTCCAA
>SP_1683(nanU) Score=4.5 Pos=-71 [Streptococcus pneumoniae TIGR4]
ATGAAATCGCATACAA
>SP_1331(nanR) Score=5 Pos=-32 [Streptococcus pneumoniae TIGR4]
ATGTAAACGTTTACTT
>SP_1717(natA) Score=4.3 Pos=-56 [Streptococcus pneumoniae TIGR4]
TTGTAAAGGCTATCAA
>SP_1588(merA) Score=4.5 Pos=-97 [Streptococcus pneumoniae TIGR4]
TGGAAAGCGTTTTTAT
>SP_0238(SP_0238) Score=4.1 Pos=0 [Streptococcus pneumoniae TIGR4]
ATGAAAGCCATTATAA
>SP_0605(fbaA) Score=4 Pos=-137 [Streptococcus pneumoniae TIGR4]
GAGAAAGGGTTTACAT
>SP_0060(bgaC) Score=4.3 Pos=-37 [Streptococcus pneumoniae TIGR4]
ATGAAAGCGCAAACTT
>SP_0749(livJ) Score=4.5 Pos=-102 [Streptococcus pneumoniae TIGR4]
AGGAAAACGTTATCAT
>SP_2107(malM) Score=4.5 Pos=-110 [Streptococcus pneumoniae TIGR4]
TTAAAAACGCTTGCAA
>SP_1220(ldh) Score=4.3 Pos=-117 [Streptococcus pneumoniae TIGR4]
ACTAAAACGTTTACAT
>SP_1470(apbE) Score=4 Pos=-72 [Streptococcus pneumoniae TIGR4]
ATGTAAGGGCTTCAAT
>SP_1491(glpF2) Score=4.9 Pos=-140 [Streptococcus pneumoniae TIGR4]
ATAAAAACGCTTACAA
>SP_1976(pflA) Score=4.9 Pos=-29 [Streptococcus pneumoniae TIGR4]
TATAAAACGTTTTCAA
>SP_0839(coaA) Score=4.5 Pos=-64 [Streptococcus pneumoniae TIGR4]
AAGAAACCGCTTTATT
>SP_0668(glcK) Score=4.3 Pos=-41 [Streptococcus pneumoniae TIGR4]
CTGTAAGCATTTTCAA
>SP_0828(rpiA) Score=4.4 Pos=-53 [Streptococcus pneumoniae TIGR4]
ATAAAAGCCTTTACAT
>SP_0090(msmX) Score=4.6 Pos=-38 [Streptococcus pneumoniae TIGR4]
ATGTAATCGTTATCAA
>SP_0459(pfl) Score=4.5 Pos=-78 [Streptococcus pneumoniae TIGR4]
TTGAAATCGGTTACTA
>SP_1121(glgB) Score=4.8 Pos=-30 [Streptococcus pneumoniae TIGR4]
TAGAAAACGCTTACAG
>SP_1097(yjbM) Score=4.3 Pos=-106 [Streptococcus pneumoniae TIGR4]
TTGAAAGCGGATTTAT
>SP_0498(hexA) Score=4.8 Pos=-50 [Streptococcus pneumoniae TIGR4]
TATAAAGCGCTTTCTT
>SP_2206(raiA) Score=4.7 Pos=-57 [Streptococcus pneumoniae TIGR4]
ATGAAAGCGTTATAAT
>SP_0576(licT) Score=4.3 Pos=-169 [Streptococcus pneumoniae TIGR4]
ATAAAAACGGTTACAG
>SP_1096(yjbK) Score=4.3 Pos=-37 [Streptococcus pneumoniae TIGR4]
ATAAATCCGCTTTCAA
>SP_0321(hylD) Score=3.8 Pos=-63 [Streptococcus pneumoniae TIGR4]
AAATAAAGGATTACAA
>SP_0314(hyl) Score=4.8 Pos=-128 [Streptococcus pneumoniae TIGR4]
TAGAAACCGTTTACAA
>SP_0321(hylD) Score=4.6 Pos=-107 [Streptococcus pneumoniae TIGR4]
ATGAAAGCGCTAATAT
>SP_1621(bglG) Score=4.5 Pos=-38 [Streptococcus pneumoniae TIGR4]
TTGAAAGCGATATAAT
>SP_0410(shetA) Score=4.6 Pos=-52 [Streptococcus pneumoniae TIGR4]
ATTTAAGCGCTTTTAT
>SP_1416(queA) Score=4.2 Pos=-92 [Streptococcus pneumoniae TIGR4]
GTGAAAACGATTTAAT
>SP_1506(ywcC) Score=4.4 Pos=-85 [Streptococcus pneumoniae TIGR4]
TTTAAAGTGCTTACAT
>SP_0473(celQ) Score=4.4 Pos=-120 [Streptococcus pneumoniae TIGR4]
CAGAAAGCGTTGTCAA
>SP_1853(galK) Score=4.2 Pos=-54 [Streptococcus pneumoniae TIGR4]
AAGAAAACGATTACAC
>SP_1128(eno) Score=4.7 Pos=-124 [Streptococcus pneumoniae TIGR4]
AAGAAAGCGATTACTT
>SP_2026(adhE) Score=3.7 Pos=-72 [Streptococcus pneumoniae TIGR4]
AATAATGCGTTATAAT
>SP_2026(adhE) Score=4.4 Pos=-94 [Streptococcus pneumoniae TIGR4]
ATGAAACTGTTTACAA
>SP_1884(treP) Score=4.1 Pos=-63 [Streptococcus pneumoniae TIGR4]
TTGGTATCGTTTACAA
>SP_0896(pfk) Score=4.1 Pos=-102 [Streptococcus pneumoniae TIGR4]
ATGAAAACGATTTATC
>SP_0645(gatA) Score=4.6 Pos=-44 [Streptococcus pneumoniae TIGR4]
TTGACAACGGTTTCAT
>SP_0303(bglA) Score=4.8 Pos=-66 [Streptococcus pneumoniae TIGR4]
AAGAATGCGTTTTCAT
>SP_0758(ptsG) Score=4.4 Pos=-102 [Streptococcus pneumoniae TIGR4]
ATAAAAGCCTTTACAA
>SP_1885(treR) Score=4.1 Pos=-137 [Streptococcus pneumoniae TIGR4]
TTGTAAACGATACCAA
>SP_0400(ropA) Score=3.9 Pos=-53 [Streptococcus pneumoniae TIGR4]
TAGAAAATGTTATAAT
>SP_0715(lctO) Score=4.5 Pos=-34 [Streptococcus pneumoniae TIGR4]
AAGCAAACGCTTACTT
>SP_1215(yrhG) Score=4.3 Pos=-68 [Streptococcus pneumoniae TIGR4]
CAGAAAACGCTTCCTA
>SP_1999(ccpA) Score=4.6 Pos=-150 [Streptococcus pneumoniae TIGR4]
TTGAAAGTGTTTACAA
>SP_2187(hcaR) Score=4.1 Pos=-16 [Streptococcus pneumoniae TIGR4]
ATGAAAGGGATAACAA
>SP_0268(pulA) Score=4.8 Pos=-70 [Streptococcus pneumoniae TIGR4]
AAGAAAACGCTTGCAT
>SP_1898(agaL) Score=4.3 Pos=-55 [Streptococcus pneumoniae TIGR4]
TGGAAAGCGATTTCAG
>SP_2044(ackA) Score=4.9 Pos=-30 [Streptococcus pneumoniae TIGR4]
TTGAAAACGCTTAAAA
>SP_1584(codY) Score=4.3 Pos=-28 [Streptococcus pneumoniae TIGR4]
ATGATAGCGATTAAAT
>SP_0394(mtlA) Score=4 Pos=-55 [Streptococcus pneumoniae TIGR4]
TTTTAAAGGTTTTTAA
>SP_0057(hexB) Score=4.3 Pos=-44 [Streptococcus pneumoniae TIGR4]
ATATAATCGCTATCAA
>SP_2186(glpK) Score=4.8 Pos=-75 [Streptococcus pneumoniae TIGR4]
AAGAAAGCGCTTTATT
>SP_0305(celB) Score=4.5 Pos=-90 [Streptococcus pneumoniae TIGR4]
TTGGAAACGCTTTATT
>SP_2108(malX) Score=4.4 Pos=-98 [Streptococcus pneumoniae TIGR4]
TTGCAACCGTTTTCTA
>SP_2152(arcD) Score=5.1 Pos=-79 [Streptococcus pneumoniae TIGR4]
TAGAAAGCGTTTTCTT
>SP_1602(phnA) Score=3.9 Pos=-111 [Streptococcus pneumoniae TIGR4]
TTGATATCGGTTTTTT
>SP_0284(manL) Score=4.6 Pos=-68 [Streptococcus pneumoniae TIGR4]
ATGAAAACGGTTTATA
>SP_0474(celZ2) Score=4.4 Pos=-63 [Streptococcus pneumoniae TIGR4]
TTGACAACGCTTTCTG
>SP_1854(galR) Score=4.2 Pos=-126 [Streptococcus pneumoniae TIGR4]
GTGTAATCGTTTTCTT
>SP_2167(fucK) Score=4.4 Pos=-77 [Streptococcus pneumoniae TIGR4]
AAGTAAGCGTTCACAT
>SP_0636(drrA) Score=3.9 Pos=-154 [Streptococcus pneumoniae TIGR4]
AGGCAAACGCTTGCAT
>SP_1722(scrA) Score=4.8 Pos=-52 [Streptococcus pneumoniae TIGR4]
ATAAAATCGCTTTCAA
>SP_1580(msmK) Score=4.9 Pos=-55 [Streptococcus pneumoniae TIGR4]
TATAAAGCGTTTTCAT
>SP_1899(msmR) Score=4.3 Pos=-68 [Streptococcus pneumoniae TIGR4]
CTGAAATCGCTTTCCA
>SP_2157(fucZ) Score=4.5 Pos=-70 [Streptococcus pneumoniae TIGR4]
TTGAAAACGAATACAA
>SP_2168(fucR) Score=4.4 Pos=-114 [Streptococcus pneumoniae TIGR4]
ATGTGAACGCTTACTT
>SP_1187(lacT) Score=4.6 Pos=-180 [Streptococcus pneumoniae TIGR4]
ATGTAAAGGTTTACAA
>SP_1798(susT1) Score=4.6 Pos=-150 [Streptococcus pneumoniae TIGR4]
CAGAAAGCGCTATCAA
# TF - PflR: SP_0246
>SP_0246(pflR) Score=5.9 Pos=-82 [Streptococcus pneumoniae TIGR4]
ACGAAAGAAAAACAATTACGA
>SP_0251(pflB) Score=5.7 Pos=-37 [Streptococcus pneumoniae TIGR4]
AAGAAATAAAAATATTTTCGA
>SP_0245(pflA) Score=5.2 Pos=-60 [Streptococcus pneumoniae TIGR4]
TCGTAATTGTTTTTCTTTCGT
# TF - FucR: SP_2168
>SP_2168(fucR) Score=6.8 Pos=-102 [Streptococcus pneumoniae TIGR4]
ACTTGAATAATGTTCAAAT
>SP_2167(fucK) Score=6.8 Pos=-92 [Streptococcus pneumoniae TIGR4]
ATTTGAACATTATTCAAGT
# TF - PipR: SP_2234
>SP_2234(pipR) Score=5.5 Pos=-38 [Streptococcus pneumoniae TIGR4]
TTTAGACATATAGTCTAAT
>SP_2234(pipR) Score=5.9 Pos=-115 [Streptococcus pneumoniae TIGR4]
TTTAAACATATTGTCTAAA
>SP_2233(pip) Score=5.5 Pos=-159 [Streptococcus pneumoniae TIGR4]
ATTAGACTATATGTCTAAA
>SP_2233(pip) Score=5.9 Pos=-82 [Streptococcus pneumoniae TIGR4]
TTTAGACAATATGTTTAAA
# TF - SgaR: SP_2032
>SP_2031(sgaG) Score=5.7 Pos=-94 [Streptococcus pneumoniae TIGR4]
AACACAAACCTGTGTT
# TF - MtaR: SP_0676
>SP_0825(folD) Score=6.3 Pos=-98 [Streptococcus pneumoniae TIGR4]
TATAGTTTAAAGCTATA
>SP_1525(metB) Score=6.2 Pos=-93 [Streptococcus pneumoniae TIGR4]
TATAGTTTGAAACTATA
>SP_1576(metA) Score=5.4 Pos=-109 [Streptococcus pneumoniae TIGR4]
TATAATTGAAAACTATA
>SP_0481(COG1912) Score=4.6 Pos=-64 [Streptococcus pneumoniae TIGR4]
TATAAGGTAAAACTATA
>SP_0149(metQ) Score=6.5 Pos=-99 [Streptococcus pneumoniae TIGR4]
TATAGTTTTAAACTATA
>SP_0585(metE) Score=6.4 Pos=-99 [Streptococcus pneumoniae TIGR4]
TATAGTTTCAAACTATA
>SP_1229(fhs) Score=6.4 Pos=-156 [Streptococcus pneumoniae TIGR4]
TATAGTTTCAAACTATA
# TF - YjdR: SP_1920
>SP_1920(yjdR) Score=5.9 Pos=-42 [Streptococcus pneumoniae TIGR4]
ATTATTCTCCAGAGAACTAT
# TF - SPy1285: SP_1714
>SP_1714(SPy1285) Score=6.7 Pos=-46 [Streptococcus pneumoniae TIGR4]
TTGTATTATTTAATTAAGACAA
>SP_1381(SAG0280) Score=4.3 Pos=-57 [Streptococcus pneumoniae TIGR4]
TTGTATCAAAGTGCTAGTATAG
>SP_0785(SPy0836) Score=6.5 Pos=-129 [Streptococcus pneumoniae TIGR4]
GTGTATTATATATCTAGTACAA
# TF - AdcR: SP_2172
>SP_1175(phtA) Score=5.4 Pos=-126 [Streptococcus pneumoniae TIGR4]
TATTAACCAGTTAAGT
>SP_1002(lmb3) Score=5.1 Pos=-36 [Streptococcus pneumoniae TIGR4]
TATTTACTAGTTAATT
>SP_1174(phtB) Score=5.5 Pos=-69 [Streptococcus pneumoniae TIGR4]
TATTAACTAGTTAATT
>SP_1004(phtD2) Score=5.1 Pos=-104 [Streptococcus pneumoniae TIGR4]
TATTTACTGGTTAATT
>SP_2055(adhA2) Score=5.3 Pos=-114 [Streptococcus pneumoniae TIGR4]
ACTTTACTGGTAAATA
>SP_2172(adcR) Score=5.9 Pos=-78 [Streptococcus pneumoniae TIGR4]
AATTAACTGGTAAACA
# TF - MntR: SP_1638
>SP_1648(mntB) Score=6.4 Pos=-62 [Streptococcus pneumoniae TIGR4]
AAAATTAACTTGACTTAATTTT
>SP_0641(prtA) Score=5.8 Pos=-194 [Streptococcus pneumoniae TIGR4]
TAAATTAACTAATGTTAATTTT
# TF - PurR: SP_1979
>SP_1229(fhs) Score=4.6 Pos=-172 [Streptococcus pneumoniae TIGR4]
AAAAACGAAGATT
>SP_1229(fhs) Score=4.7 Pos=-89 [Streptococcus pneumoniae TIGR4]
ATTTACGAACGTT
>SP_1249(guaC) Score=4.6 Pos=-141 [Streptococcus pneumoniae TIGR4]
AAACCCGAACGAT
>SP_0044(purC) Score=4.3 Pos=-16 [Streptococcus pneumoniae TIGR4]
AAAGGCGAACTTT
>SP_0051(purD) Score=4.2 Pos=-56 [Streptococcus pneumoniae TIGR4]
TAAAACGAACTTT
# TF - TreR: SP_1885
>SP_1884(treP) Score=5.8 Pos=-80 [Streptococcus pneumoniae TIGR4]
ACAAGTTGCAGACAAGTTTG
>SP_1885(treR) Score=5.8 Pos=-124 [Streptococcus pneumoniae TIGR4]
CAAACTTGTCTGCAACTTGT
# TF - HrcA: SP_0515
>SP_0515(hrcA) Score=6.5 Pos=-53 [Streptococcus pneumoniae TIGR4]
TTAGCACTTGGATGCATTGAGTGCTAA
>SP_1907(groS) Score=7.6 Pos=-57 [Streptococcus pneumoniae TIGR4]
TTAGCACTCAAGTTCAAAGAGTGCTAA
>SP_0515(hrcA) Score=7.8 Pos=-136 [Streptococcus pneumoniae TIGR4]
TTAGCACTCTTGATAAAAGAGTGCTAA
# TF - RegR: SP_0330
>SP_0314(hyl) Score=6.2 Pos=-89 [Streptococcus pneumoniae TIGR4]
TAATTAAACCGGTTTACTTA
>SP_0320(kduD) Score=5 Pos=-253 [Streptococcus pneumoniae TIGR4]
TAGGTTTACCGGTTTACTTT
>SP_0320(kduD) Score=5.6 Pos=-71 [Streptococcus pneumoniae TIGR4]
TGACAAAACCGGTTTACTAG
>SP_0321(hylD) Score=5.6 Pos=-219 [Streptococcus pneumoniae TIGR4]
CTAGTAAACCGGTTTTGTCA
>SP_0321(hylD) Score=5 Pos=-37 [Streptococcus pneumoniae TIGR4]
AAAGTAAACCGGTAAACCTA
# TF - GalR: SP_1854
>SP_1853(galK) Score=6.2 Pos=-116 [Streptococcus pneumoniae TIGR4]
GATATTTTACTAAAATTTT
>SP_1854(galR) Score=6 Pos=-67 [Streptococcus pneumoniae TIGR4]
AAAATTTTAGTAAAATATC
# TF - HomR
>SP_0585(metE) Score=5 Pos=-218 [Streptococcus pneumoniae TIGR4]
CTTATAAGAATTACTAATAAC
>SP_0585(metE) Score=5 Pos=-251 [Streptococcus pneumoniae TIGR4]
GTTATAGTCTTTTCTAATAAC
# TF - BirA: SP_1900
>SP_0783(bioY) Score=8.2 Pos=-35 [Streptococcus pneumoniae TIGR4]
ATAGTTACT----------------GTTAACTAT
>SP_0783(bioY) Score=7.4 Pos=-87 [Streptococcus pneumoniae TIGR4]
TTTGTTACC----------------GTTGACATC
# TF - BfrR: SP_1799
>SP_1798(bfrF) Score=6.5 Pos=-93 [Streptococcus pneumoniae TIGR4]
AAAATGAAACGTTTCAAAAA
>SP_1798(bfrF) Score=6.5 Pos=-31 [Streptococcus pneumoniae TIGR4]
AAAATGAAACGTTTCAAAAA
# TF - CelR: SP_0306, SP_0307
>SP_0305(celB) Score=5.7 Pos=-125 [Streptococcus pneumoniae TIGR4]
TTTCCATATCATTTAGGAAA
>SP_0303(bglA) Score=6.2 Pos=-86 [Streptococcus pneumoniae TIGR4]
TTTCCTTAACAATAAGGAAA
# TF - MtlR: SP_0395
>SP_0394(mtlA) Score=6.9 Pos=-85 [Streptococcus pneumoniae TIGR4]
TTTGACACAAAATCTGTGACAAA
# TF - SgaR2
>SP_2131(sgaR2) Score=5.2 Pos=-69 [Streptococcus pneumoniae TIGR4]
ATATTGTGCTCAAATA
# TF - CodY: SP_1584
>SP_2066(thrC) Score=5.4 Pos=-57 [Streptococcus pneumoniae TIGR4]
AATTTTCTGAAAAAT
>SP_1584(codY) Score=5.6 Pos=-71 [Streptococcus pneumoniae TIGR4]
AATTTTCAGATAATT
>SP_0445(ilvB) Score=5.3 Pos=-93 [Streptococcus pneumoniae TIGR4]
AAAATTCAGAAAATT
>SP_0366(oppA2) Score=5.3 Pos=-71 [Streptococcus pneumoniae TIGR4]
AAAATTCTGAAAATT
>SP_1891(oppA2) Score=5.6 Pos=-87 [Streptococcus pneumoniae TIGR4]
AATATTCTGAAAATT
>SP_1961(rpoB) Score=5 Pos=-112 [Streptococcus pneumoniae TIGR4]
AAGATTCTGAAAATT
>SP_1119(gapN) Score=5.2 Pos=-55 [Streptococcus pneumoniae TIGR4]
GATTTTCTGAAAATT
>SP_1306(gdhA) Score=5.5 Pos=-94 [Streptococcus pneumoniae TIGR4]
AATTTTTAGAAAATT
>SP_0159(SMU.1109) Score=5.2 Pos=-33 [Streptococcus pneumoniae TIGR4]
ATTATTCTGAAAATT
>SP_0856(ilvE) Score=5.8 Pos=-88 [Streptococcus pneumoniae TIGR4]
AATTTTCTGAAAATT
>SP_1578(ubiE) Score=4.7 Pos=-55 [Streptococcus pneumoniae TIGR4]
AATTGTCAGATAATA
>SP_0749(livK) Score=5.6 Pos=-60 [Streptococcus pneumoniae TIGR4]
AATTTTCTGATAATT
>SP_0711(str1582) Score=5.3 Pos=-183 [Streptococcus pneumoniae TIGR4]
AAATTTCAGAAATTT
>SP_1013(asd) Score=5.5 Pos=-31 [Streptococcus pneumoniae TIGR4]
AATTTTTAGAAAATT
>SP_1869(fatD) Score=5.2 Pos=-80 [Streptococcus pneumoniae TIGR4]
AATTGTCAGAAATTT
>SP_2126(ilvD) Score=5.8 Pos=-85 [Streptococcus pneumoniae TIGR4]
AATTTTCTGAAAATT
>SP_0141(mutR) Score=4.7 Pos=-69 [Streptococcus pneumoniae TIGR4]
AACTATCAGAATATT
>SP_1361(hom) Score=5.2 Pos=-56 [Streptococcus pneumoniae TIGR4]
AATTTTCACAAAATT
>SP_0095(ymdE) Score=5 Pos=-41 [Streptococcus pneumoniae TIGR4]
AAAATTTAGAAAATT
>SP_0754(acuB) Score=4.4 Pos=-183 [Streptococcus pneumoniae TIGR4]
TAATTTCTAATAATT
# TF - FruR: SP_0875
>SP_0875(fruR) Score=5.5 Pos=-73 [Streptococcus pneumoniae TIGR4]
TGATAAAAAATGCTTGACTT
>SP_0875(fruR) Score=5.8 Pos=-93 [Streptococcus pneumoniae TIGR4]
TGATAGATTTTGAAAGAAAA
>SP_0875(fruR) Score=5.4 Pos=-83 [Streptococcus pneumoniae TIGR4]
TGAAAGAAAATGATAAAAAA
# TF - CtsR: SP_2195
>SP_0338(clpL) Score=6.5 Pos=-275 [Streptococcus pneumoniae TIGR4]
AAACTCTTGACCTTTTCTGACCAA
>SP_0820(clpE) Score=6.3 Pos=-62 [Streptococcus pneumoniae TIGR4]
TAGAATTTGACTATTTTTGACCTT
>SP_1907(groS) Score=6.2 Pos=-102 [Streptococcus pneumoniae TIGR4]
TTTTTCTTGATTATTTCTGACCAA
>SP_0746(clpP) Score=6.8 Pos=-89 [Streptococcus pneumoniae TIGR4]
AAAAATTTGACCTTTTTTGACCAA
>SP_2195(ctsR) Score=-0.4 Pos=-44 [Streptococcus pneumoniae TIGR4]
ATAGTCAAACAAGGTCAAGGTTTA
# TF - AgaR: SP_0058
>SP_0060(bgaC) Score=5.6 Pos=-56 [Streptococcus pneumoniae TIGR4]
ATAATTAATATAACAACAAA
>SP_0058(agaR) Score=5.6 Pos=-312 [Streptococcus pneumoniae TIGR4]
TTTGTTGTTATATTAATTAT
# TF - LacR: SP_1182
>SP_1182(lacR) Score=-1.4 Pos=-78 [Streptococcus pneumoniae TIGR4]
TTGTTTTAT-TTGTTGTTT
>SP_1182(lacR) Score=-0.6 Pos=-88 [Streptococcus pneumoniae TIGR4]
ATTTTTGTT-TTGTTTTAT
>SP_1193(lacA) Score=8.8 Pos=-143 [Streptococcus pneumoniae TIGR4]
AAATAACAA-AACAAACAA
# TF - YwzG: SP_0100
>SP_0100(ywzG) Score=6.5 Pos=-110 [Streptococcus pneumoniae TIGR4]
TATATAAAAATTTTACACA