# TF - SphR: slr0081
>sll0679(sphX) Score=10.9 Pos=-135 [Synechocystis sp. PCC 6803]
TTTAACCA-(3)-CTTTACTA-(3)-CTTAACCT
>sll0654(phoA) Score=7.3 Pos=-210 [Synechocystis sp. PCC 6803]
TTTTACTT-(3)-CTTTCCCT-(3)-GTTAGCAA
>sll0654(phoA) Score=8.8 Pos=-175 [Synechocystis sp. PCC 6803]
CTTAACCT-(3)-CATAGTCT-(3)-CATAAGTT
>slr1247(pstS) Score=10.5 Pos=-342 [Synechocystis sp. PCC 6803]
CTTAATCT-(3)-CTTAATTC-(3)-CTTAATTT
>slr0115(rpaA) Score=7 Pos=-174 [Synechocystis sp. PCC 6803]
ATTACCCA-(3)-TTTAGATG-(3)-TTTTTCTT
# TF - Fur: sll0567
>slr0749(chlL) Score=3.3 Pos=-173 [Synechocystis sp. PCC 6803]
ATTTTATTTTTGTCTCAAT
>ssr2333(feoA) Score=4.5 Pos=-31 [Synechocystis sp. PCC 6803]
GTTGAGAATTATTTGCAGT
>sll1406(fhuA) Score=3.4 Pos=-38 [Synechocystis sp. PCC 6803]
ATTAATAAAACTTTTTAAC
>sll1404(exbB) Score=6 Pos=-110 [Synechocystis sp. PCC 6803]
ATTGAAAATAGTTATCAAT
>slr1490(fhuA) Score=4.1 Pos=-86 [Synechocystis sp. PCC 6803]
TTTGAGAATTAGTTGCAGT
>slr1484(SYNPCC7002_G0090) Score=5.6 Pos=-255 [Synechocystis sp. PCC 6803]
ATTGATAACTATTTTCAAT
>slr1318(fecE) Score=4.1 Pos=-176 [Synechocystis sp. PCC 6803]
ATTCCTAATTATTCTTAAC
>slr1485(SYNPCC7002_G0089) Score=2.2 Pos=-9 [Synechocystis sp. PCC 6803]
GTTTTAATAATGTTTAAAT
>slr1316(fecC) Score=4.2 Pos=-78 [Synechocystis sp. PCC 6803]
ATTGATAATCTTTCCTAGT
>slr1485(SYNPCC7002_G0089) Score=2.7 Pos=-42 [Synechocystis sp. PCC 6803]
ACTGTGAAATTTATTTAAC
>sll1404(exbB) Score=4.6 Pos=-64 [Synechocystis sp. PCC 6803]
ATTGAGAATTACTCTTAAC
>sll1404(exbB) Score=4.6 Pos=-286 [Synechocystis sp. PCC 6803]
TATGTGAAATATTATTATT
>slr1295(sufA) Score=4.9 Pos=-44 [Synechocystis sp. PCC 6803]
ATTGAGAATTACTTTTATT
>sll1911(SYNPCC7002_A0913) Score=4.2 Pos=-59 [Synechocystis sp. PCC 6803]
GTTGTTAAAATTTAACAAT
>slr0513(sufA) Score=3.9 Pos=-240 [Synechocystis sp. PCC 6803]
AATAATAATCTCTTGCAAT
>slr0513(sufA) Score=4.1 Pos=-187 [Synechocystis sp. PCC 6803]
ATTGCACTTTATTTGCAAT
>sll0849(psbD) Score=3.3 Pos=-298 [Synechocystis sp. PCC 6803]
AATGTAAAATATTTGCTAA
>slr1181(psbA) Score=2.8 Pos=-242 [Synechocystis sp. PCC 6803]
ATTAAAATCTTTTTTTTAC
>slr1181(psbA) Score=4 Pos=-182 [Synechocystis sp. PCC 6803]
TTAAAGAAATATTATTAAT
>sll1867(psbA) Score=3.4 Pos=-124 [Synechocystis sp. PCC 6803]
ATTTACAAATTGTTACAAT
>slr1738(perR) Score=3 Pos=-194 [Synechocystis sp. PCC 6803]
ATTAATATTTTTTTTATAA
>sll0247(isiA) Score=2.8 Pos=-269 [Synechocystis sp. PCC 6803]
ATTTCTTAATAATTTTAGT
>ssr2333(feoA) Score=4.4 Pos=-69 [Synechocystis sp. PCC 6803]
TTTGATATTTATTCTGAAC
>slr1392(feoB) Score=4.5 Pos=-278 [Synechocystis sp. PCC 6803]
GTTGAGAATTATTTGCAGT
# TF - NrtR: slr1690
>slr1691(nadE) Score=6 Pos=-34 [Synechocystis sp. PCC 6803]
TTAAAGTAATAATTACCATAA
>sll0622(nadA) Score=6.1 Pos=-43 [Synechocystis sp. PCC 6803]
TTATGGTAGTTTTAACTATAA
>slr0787(nadM) Score=6 Pos=-69 [Synechocystis sp. PCC 6803]
TTTTGGTGAAATCTACTATAA
# TF - NtcA: sll1423
>sll0108(amt1) Score=4 Pos=-189 [Synechocystis sp. PCC 6803]
AGTAGTAAATCATACA
>sll0108(amt1) Score=4.4 Pos=-18 [Synechocystis sp. PCC 6803]
TGTAGATTAAAGTACA
>ssr1562(SYNPCC7002_A0076) Score=4.5 Pos=-78 [Synechocystis sp. PCC 6803]
TGTAATCGATAATACA
>slr1147(SYNPCC7002_A1954) Score=4.7 Pos=-214 [Synechocystis sp. PCC 6803]
TGTAATGATAGTTACA
>ssl1911(gifA) Score=5 Pos=-89 [Synechocystis sp. PCC 6803]
TGTATAAAATGTTACA
>slr1756(glnA) Score=4.3 Pos=-98 [Synechocystis sp. PCC 6803]
GGTAGCGAAAAATACA
>ssl0707(glnB) Score=3.7 Pos=-184 [Synechocystis sp. PCC 6803]
GGTACTGATTTTTACA
>slr0851(ndh) Score=4.1 Pos=-72 [Synechocystis sp. PCC 6803]
TGTAACAACCATTACC
>sll1450(nrtA) Score=3.9 Pos=-96 [Synechocystis sp. PCC 6803]
AGTTACAAACTATACA
>slr0898(nirA) Score=4.7 Pos=-74 [Synechocystis sp. PCC 6803]
TGTAATTTACGTTACA
>sll1330(nrrA) Score=4.6 Pos=-75 [Synechocystis sp. PCC 6803]
GGTAACTGTTGTTACA
>slr0653(rpoD) Score=3.9 Pos=-246 [Synechocystis sp. PCC 6803]
TGTTATCGAGGCTACA
>sll1515(gifB) Score=4.2 Pos=-119 [Synechocystis sp. PCC 6803]
CGTAAAAATGGATACA
>slr0447(urtA) Score=4.5 Pos=-211 [Synechocystis sp. PCC 6803]
GGTATCCTATGCTACA
>slr0009(rbcL) Score=4.3 Pos=-228 [Synechocystis sp. PCC 6803]
TGTAATTTAAAAAACA
>sll0741(nifJ) Score=3.3 Pos=-181 [Synechocystis sp. PCC 6803]
AGAATCAACAAAAACA
>sll1733(ndhD) Score=4 Pos=-252 [Synechocystis sp. PCC 6803]
TGTAACAATTTTTAGT
>sll1732(ndhF) Score=4 Pos=-244 [Synechocystis sp. PCC 6803]
TGTAACAAATAACACT
>sll1712(hanA) Score=3.8 Pos=-264 [Synechocystis sp. PCC 6803]
GGTAGTTTTTGAAACT
# TF - NtcB: slr0395
>sll1450(nrtA) Score=4.9 Pos=-125 [Synechocystis sp. PCC 6803]
ATGCAGTAATCGCAT
>slr0898(nirA) Score=4.8 Pos=-103 [Synechocystis sp. PCC 6803]
ATGCGTAAACTGCAT
>slr0395(ntcB) Score=4 Pos=-187 [Synechocystis sp. PCC 6803]
ATGGATTCTTTTCAT
>smr0007(psbL) Score=4.3 Pos=-30 [Synechocystis sp. PCC 6803]
ATGCAATTTATTCAA
# TF - Zur: sll1937
>sll1550(ompZ) Score=6.7 Pos=-118 [Synechocystis sp. PCC 6803]
ATGATAATGATTATCATTATTTA
>slr2043(znuA) Score=5.6 Pos=-84 [Synechocystis sp. PCC 6803]
ATGATAATGATTATCGTTTATTG
>sll1937(zur) Score=5.6 Pos=-45 [Synechocystis sp. PCC 6803]
CAATAAACGATAATCATTATCAT
# TF - SufR: sll0088
>sll0088(sufR) Score=5.6 Pos=-163 [Synechocystis sp. PCC 6803]
TAAAACAACAGGTAAGTTGTTTTA
>sll0088(sufR) Score=5.6 Pos=-123 [Synechocystis sp. PCC 6803]
ATTAGCAACCCGATTGTTGTCAAA
>sll0741(nifJ) Score=4.9 Pos=-172 [Synechocystis sp. PCC 6803]
AAAAACAATCTTGACGTTGTTTAA
>slr0074(sufB) Score=5.3 Pos=-116 [Synechocystis sp. PCC 6803]
TAAAACAACTTACCTGTTGTTTTA
# TF - Crp: sll1371, sll1924
>sll1874(chlA-II) Score=4.8 Pos=-403 [Synechocystis sp. PCC 6803]
TGTGAGAATAATCACA
>slr0442(SYNPCC7002_A1600) Score=4.9 Pos=-203 [Synechocystis sp. PCC 6803]
TGTGATCCAGATCACA
>sll1268(SYNPCC7002_A1600) Score=5.3 Pos=-162 [Synechocystis sp. PCC 6803]
TGTGATCTAGATCACA
>slr0013(SYNPCC7002_A0687) Score=4.1 Pos=-56 [Synechocystis sp. PCC 6803]
TTTGATCAAAGTCCTA
>sll1708(sll1708) Score=4.4 Pos=-77 [Synechocystis sp. PCC 6803]
CGTGATAGTAATCACC
>slr1667(slr1667) Score=4.9 Pos=-259 [Synechocystis sp. PCC 6803]
TGTGATCTGGGTCACA
>slr1703(serS) Score=3.6 Pos=-211 [Synechocystis sp. PCC 6803]
ATTGATAGAAGGCACT
>slr1351(murF) Score=5 Pos=-101 [Synechocystis sp. PCC 6803]
GGTGATCTAGATCACA
>slr1503(slr1503) Score=3.8 Pos=-1 [Synechocystis sp. PCC 6803]
TATGACAATTAGCACC
>sll1608(SYNPCC7002_A2113) Score=3.8 Pos=-188 [Synechocystis sp. PCC 6803]
AATGATAAACATCACT
>sll1371(crp) Score=4 Pos=-159 [Synechocystis sp. PCC 6803]
AGTGAAAAAACTCACT
>sll1924(crp) Score=4.5 Pos=-106 [Synechocystis sp. PCC 6803]
TGTGACAATAAACACC
# TF - CcmR: sll0030, sll1594
>slr2006(mnhC) Score=3.8 Pos=-125 [Synechocystis sp. PCC 6803]
ATAGAATCTATGCAAT
>slr2007(mnhD) Score=4.3 Pos=-107 [Synechocystis sp. PCC 6803]
ATTGTGATTGGTCTAT
>slr0040(cmpA) Score=4.5 Pos=-208 [Synechocystis sp. PCC 6803]
TTGGATATTTATCTAT
>sll0834(bicA) Score=5.3 Pos=-45 [Synechocystis sp. PCC 6803]
ATAGACTAAAGACTAT
>sll0834(bicA) Score=4.4 Pos=-76 [Synechocystis sp. PCC 6803]
CTAGAATATTCTCTAT
>slr1512(sbtA) Score=4.7 Pos=-182 [Synechocystis sp. PCC 6803]
ATAGACTTTAGCTTAT
>slr2094(glpX) Score=5.6 Pos=-71 [Synechocystis sp. PCC 6803]
ATAGACTTTTGACTAT
>sll1732(ndhF3) Score=3.9 Pos=-204 [Synechocystis sp. PCC 6803]
ATTGTCGCTTGACTAT
>sll1594(ccmR) Score=4.8 Pos=-179 [Synechocystis sp. PCC 6803]
ATAGCCATAGGTCTAT
>sll1594(ccmR) Score=4.7 Pos=-240 [Synechocystis sp. PCC 6803]
ATTGGCTTTATTCTAT
>slr1512(sbtA) Score=5 Pos=-136 [Synechocystis sp. PCC 6803]
ATAGACAAGAGTCTAT
# TF - HrcA: sll1670
>sll0416(groEL2) Score=10.2 Pos=-81 [Synechocystis sp. PCC 6803]
TTAGCACTC---------GAGTGCTAA
>slr2075(groES) Score=10.2 Pos=-74 [Synechocystis sp. PCC 6803]
TTAGCACTC---------GAGTGCTAA
# TF - PerR: slr1738
>slr1738(perR) Score=5.3 Pos=-233 [Synechocystis sp. PCC 6803]
TCAGAATAGTTCTGA
>slr1738(perR) Score=4.8 Pos=-181 [Synechocystis sp. PCC 6803]
TTATAATTATTCTAT
>sll1621(ahpC) Score=4.7 Pos=-144 [Synechocystis sp. PCC 6803]
ATAGAATAATTATAA
>sll1621(ahpC) Score=5.4 Pos=-92 [Synechocystis sp. PCC 6803]
TCAGAACTATTCTGA
# TF - PedR: ssl0564
>slr1957(slr1957) Score=4.8 Pos=-18 [Synechocystis sp. PCC 6803]
AAGCATAAATACCT
>slr1291(ndhD2) Score=4.3 Pos=-20 [Synechocystis sp. PCC 6803]
AGGTATTTATTCTT
>slr0750(chlN) Score=3.5 Pos=-242 [Synechocystis sp. PCC 6803]
AATTAAAATTAATC
>slr0749(chlL) Score=4 Pos=-178 [Synechocystis sp. PCC 6803]
AAGTTATTTTATTT
>slr0749(chlL) Score=4.8 Pos=-196 [Synechocystis sp. PCC 6803]
AAGTAACTATACCC
>slr0772(chlB) Score=3.4 Pos=-182 [Synechocystis sp. PCC 6803]
AAGCATTAAGAATT
>sll0296(sll0296) Score=4.8 Pos=-349 [Synechocystis sp. PCC 6803]
GAGTAAATATACCT
>sll0807(rpe) Score=3.5 Pos=-27 [Synechocystis sp. PCC 6803]
GAGTTGAAATACTT
>ssl0564(pedR) Score=4.8 Pos=-28 [Synechocystis sp. PCC 6803]
GAGTAAATATACCT
# TF - PirR: slr1871
>slr1871(pirR) Score=5 Pos=-73 [Synechocystis sp. PCC 6803]
TTGCATCCCCAATAAAGACAA
>slr1871(pirR) Score=5.3 Pos=-32 [Synechocystis sp. PCC 6803]
TTGCATCCAAAATAGGGACAA
>sll1773(pirA) Score=5.3 Pos=-118 [Synechocystis sp. PCC 6803]
TTGTCCCTATTTTGGATGCAA
>sll1773(pirA) Score=5 Pos=-77 [Synechocystis sp. PCC 6803]
TTGTCTTTATTGGGGATGCAA
# TF - SmtB: sll0792
>sll0792(smtB) Score=6.5 Pos=-97 [Synechocystis sp. PCC 6803]
AACACCTGAAGATATGCTCAGATATT
>slr0798(ziaA) Score=6.5 Pos=-80 [Synechocystis sp. PCC 6803]
AATATCTGAGCATATCTTCAGGTGTT
# RNA - TPP
>slr0118(thiC) Score=63 Pos=-102 [Synechocystis sp. PCC 6803]
GCCATAGCTAGGGGTGTCTAGAAAGCTAGGCTGAGAAAAACCCTTAGAACCTGAGACTGGGTAATACCAGCGGAGGGAAGCTCACCATTCGAGGAAA
# TF - ArsR: sll1957
>slr0944(arsB) Score=6 Pos=-53 [Synechocystis sp. PCC 6803]
ATCAAGTTTTTTTGAT
>slr0944(arsB) Score=6 Pos=-24 [Synechocystis sp. PCC 6803]
ATCAAGTTTTTTTGAT
>sll1957(arsR) Score=4.8 Pos=-40 [Synechocystis sp. PCC 6803]
ATAAATTATTTTTAAT
# RNA - ykkC-yxkD
>sll1077(speB) Score=87 Pos=-196 [Synechocystis sp. PCC 6803]
GGGATATTGTTTCTAGGGTTCCGATTCCTGGTGATGTGGGGAATGGCTGGTCCGAGAGAAACAGGCTAGGCTTTGTAAAGATTTTTGCCACTAGCTACACGGCGGGACAAAAGCCCGGGAGAC
# RNA - L10_leader
>sll1745(rplJ) Score=66.5 Pos=-213 [Synechocystis sp. PCC 6803]
ATTTATTTAACTGGCTATGCCAAAGACCGCAGGAGCAATTAGGGTTGCTTAATTAACCTGCCGAGGTTGAAGCCTGAATCAAGATTTGAGTTTGTTGGGGATTTGCTTCCTTGACAGCTTTTGATCCTCTGCTTCAGCCCCGGCGATCGCCAAGGGGCATTTTTATTGTGTGT
# RNA - glnA
>sll1515(IF17) Score=56.2 Pos=-96 [Synechocystis sp. PCC 6803]
AATCGTTCATCTTCTCTTTTTGAAGAAGACGGAAGTAGGGATATATTCCTGAAGGAACGCGCC
# TF - sll5086: sll5086
>slr5087(PF10025) Score=16.5 Pos=-576 [Synechocystis sp. PCC 6803]
ACAGTT-(19)-ACAGTT-(11)-AACTGT-(7)-ACAATT