# TF - ArgR: NT01CX_1986
>NT01CX_0138(artP2) Score=5.1 Pos=-254 [Clostridium novyi NT]
ATATATAATTATAAAA
>NT01CX_0138(artP2) Score=4.5 Pos=-232 [Clostridium novyi NT]
ATGTATAATAATACTG
>NT01CX_0138(artP2) Score=4.8 Pos=-158 [Clostridium novyi NT]
TTGTATATGTATAAAA
>NT01CX_0138(artP2) Score=5.3 Pos=-138 [Clostridium novyi NT]
TTGAATAAATATTCAT
>NT01CX_0138(artP2) Score=4.8 Pos=-115 [Clostridium novyi NT]
TTGCATAATTATAATA
>NT01CX_0138(artP2) Score=5.1 Pos=-95 [Clostridium novyi NT]
ATGTATAATTATTTAT
>NT01CX_0138(artP2) Score=4.9 Pos=-10 [Clostridium novyi NT]
GTGTATAAATATGAAA
>NT01CX_2379(argC) Score=5 Pos=-132 [Clostridium novyi NT]
TTGAATAATTATACTA
>NT01CX_2379(argC) Score=4.9 Pos=-59 [Clostridium novyi NT]
TTGAATAATTATGCTT
>NT01CX_1828(argT) Score=5.2 Pos=-92 [Clostridium novyi NT]
TTGTATTATTATAAAT
>NT01CX_1828(argT) Score=5.3 Pos=-72 [Clostridium novyi NT]
ATGCATAAATATAAAA
>NT01CX_0932(artP) Score=4.6 Pos=-267 [Clostridium novyi NT]
TTTTAAAAATATGCAA
>NT01CX_0932(artP) Score=5 Pos=-115 [Clostridium novyi NT]
GTGTATAAATATAAAT
>NT01CX_0932(artP) Score=4.8 Pos=-84 [Clostridium novyi NT]
ATACATAAATATTCAT
>NT01CX_0932(artP) Score=5.4 Pos=-61 [Clostridium novyi NT]
TTGCATAATTATAAAT
>NT01CX_0383(carA) Score=5.3 Pos=-77 [Clostridium novyi NT]
ATGTATAAATATGAAA
>NT01CX_0383(carA) Score=5.1 Pos=-57 [Clostridium novyi NT]
ATGTATAAAAATTCAA
>NT01CX_2380(argB) Score=4.9 Pos=-102 [Clostridium novyi NT]
AAGCATAATTATTCAA
>NT01CX_2380(argB) Score=5 Pos=-29 [Clostridium novyi NT]
TAGTATAATTATTCAA
# TF - LexA: NT01CX_2111
>NT01CX_2123(recA) Score=4.9 Pos=-49 [Clostridium novyi NT]
TAGAACAAACGTTCGG
>NT01CX_2111(lexA) Score=4.8 Pos=-296 [Clostridium novyi NT]
TCGAAAATTTGTTCTA
>NT01CX_2111(lexA) Score=4.8 Pos=-70 [Clostridium novyi NT]
TAGAACATTAGTTTGA
>NT01CX_1274(uvrB) Score=4.9 Pos=-29 [Clostridium novyi NT]
ATGAACAAATGTTCTT
# TF - HrcA: NT01CX_0059
>NT01CX_0059(hrcA) Score=7.5 Pos=-49 [Clostridium novyi NT]
TTAGCACTCAACTAAAACGAGTGCTAA
>NT01CX_0463(groES) Score=7.9 Pos=-82 [Clostridium novyi NT]
TTAGCACTCGATGTTATTGAGTGCTAA
# RNA - Cobalamin
>NT01CX_0583(cbiA) Score=119.1 Pos=-301 [Clostridium novyi NT]
AAAATTGTATATTAGCTTAGGTGTCTGATTAATTTCAGGTGAAAAGGGAATACGGTGAAAATCCGTAACAGCCCCCGCTACTGTAATGTGGACAAATCTAAAACCACTGGTTTATAACCGGGAAGGAAGAGGAGGATGAAACTAAGTCAGGAGACCTGCCTAAGCTTTGGATAAAGAC
>NT01CX_1329(cbiM) Score=95.8 Pos=-349 [Clostridium novyi NT]
AAAATACATACAAAGTAGGTGTCAGTTATAATTGAAAGTTTGATTATGAACTGGTGAAAAGGGAAGCTGGGTGAAAGTCCCACACGGTCCCGCCGCTGTAAGAGAGGAGTTTTTCTTAACAAAACCACTGGTATCTTAAGATATTGGGAAGGGTAGAAAAATTATGATACTCAAGTCAGAAGACCTGCCTATTTTTGTACACCAATGAA
>NT01CX_2077(cobT) Score=107 Pos=-298 [Clostridium novyi NT]
AATTAAATAAGTCATTAGGTGCTCTATTATAAGAGGTAAAAGGGAAAGTGGTTAAAATCCACTGCAGCCCCCGCTACTGTAAATGAGGATGAAATCTAAATTGCCATCCATAAGGAGAAGGTTAGAAAGTAATATGATCCATAAGCCAGGAAACCTGCCTAATGTACGATTATTTAAGT
# RNA - FMN
>NT01CX_0715(ribD) Score=113.4 Pos=-387 [Clostridium novyi NT]
TTTAATCCTTCAGGGCAGGGTGAAATTCCCGACCGGCGGTAAAGTCCGCGAGCCACTTTAGTGGTTGATTTGGTGAGATTCCAAGACCGACAGTAAAGTCTGGATGGGAGAATAGGATTAA
>NT01CX_0505(ribU) Score=124.7 Pos=-229 [Clostridium novyi NT]
ATAGTATCTTCAGGGCAGGGTGTAATTCCCGACCGGCGGTTAAAGTCCGCGAGCTATACTTGGTATGGCTGATTTGGTGAGATTCCAAAACCGACAGTAAAGTCTGGATGAGAGAAGGTATAG
# RNA - GEMM_RNA_motif
>NT01CX_0209 Score=67.5 Pos=-142 [Clostridium novyi NT]
CCAACGATAAAGGCAAATTTAGTGAAAACTAGAGACGCAAAGCTAAAGGGCCTTCCTTAGTTATTAAGATGGCAGCCAGTTACCGAA
# RNA - Glycine
>NT01CX_2425(glyP) Score=32.8 Pos=-261 [Clostridium novyi NT]
GATGAAGATAGCGGGAGAGAGATGGGATTCCATCCACCGAAGAGGTCAATCTTTCAGGTAACTATGTTTATAGGGGATGACCGTTATT
>NT01CX_2425(glyP) Score=66.3 Pos=-174 [Clostridium novyi NT]
TGGACGAGCCTCTGGAGAGATCCATTAATGGACACCGAAGGAGAAAGATAGCTAAATTTTAGTTATTGAAACTCTCAGGTAAAAGGACAGAGGATAGGAT
# RNA - L10_leader
>NT01CX_1105(rplJ) Score=77.2 Pos=-149 [Clostridium novyi NT]
TTAAATAAGATAATACTCCGCAGACAGTAGGTGCGAAAGCATAACGGGGAACCAACCTACCGAGGATTTAGATATTCGGTATTTTGGATATATTAAGCCTCTTCGTGTCTGGGAAGAGGCTTTTAGTTTTTGTTAAG
# RNA - L19_leader
>NT01CX_2208(rplS) Score=17.4 Pos=-76 [Clostridium novyi NT]
ACGGGCGGTCCTCTGTCTATAGTACACAATATACATAGAGTACGAACGTCAA
# RNA - L20_leader
>NT01CX_1761(infC) Score=61.8 Pos=-316 [Clostridium novyi NT]
TCGTTAAGAAGAAACTAAGCTGTTTCTCACCTTACAGCACAGCTAGTAAGGTTATACATTCATTTCAAGTTATTTTATTTTATGTGAATTGTATAGGACGGCTTAGAAGCCGTCCTTTTTATTTTGTAA
# RNA - L21_leader
>NT01CX_0081(rplU) Score=22.5 Pos=-89 [Clostridium novyi NT]
GGCATTTGTAAACCGCACGCATAAGGTGAGAAATCTCAAAGTAATTTGAGTACCGACGGTGGCGAGACTCTTATAAGGA
# RNA - Lysine
>NT01CX_0133(lysW) Score=116.4 Pos=-307 [Clostridium novyi NT]
GTTTAGTGATAGAGGTGCGGTATTTAAGAGTACTTATGTTGAGGAAAGCACGATGAAGCATAAGGAAAGGAAACATCGCCGAAGTGTATAACCGATGCTTTAAGGTTATATGGCTGGTTTTGCATAAAATATATGTAAGATTGTCACAAATTTTATTTGTGGAGGGCTATCATTCAA
>NT01CX_1352(lysA) Score=100.3 Pos=-319 [Clostridium novyi NT]
CCTAAGGTAGAGGTGCTGTAATTAAGAGTATTTACTAGTAGTCGGCAGATTAAGATAAGTAAAAAAAGGGATTACAGCCGAAGATAATCAAATTGGCAAATTTATTATCTGGCGTTATGCATAATATGTATGACGCTGTCATGTTGTTATTAATATGGAGAGCTACAAGGTTACA
>NT01CX_2354(lysP) Score=110.5 Pos=-340 [Clostridium novyi NT]
TAACTAAGATAGAGGTGCGAGATTTAAGAGTAGTATTATGGAGTTAAGTGCTAAGAAGTAATAAGAAAGGAAATTTCGCCGAAGCTTATAGATAATACTTTAATGCTATTTGCTGGGCTTACATAAAATATGTGTAAGACTGTCACAAATAAAGTTTGTGGAGAGCTATTATTTTA
# RNA - PreQ1
>NT01CX_0338(queT) Score=24.4 Pos=-278 [Clostridium novyi NT]
AAAGTAGACAGTTCGTAAGCCTCCTGTCTATAAACAAAACTAAGGTAAA
>NT01CX_2382(COG1924) Score=23.3 Pos=-155 [Clostridium novyi NT]
TAAGACAGTTCGTAACCATCCTGTCTATAAACAAAACTAGGACTTTAT
# RNA - Purine
>NT01CX_2417(pbuO) Score=75.7 Pos=-282 [Clostridium novyi NT]
TTAAATACGTTATTAAATAACTCATATAAATCCGATAATATGGTTCGGTTGTTTCTACGGGAATACCTTAAATATTCCTGCTATGAGTAAATCTATGTATAAT
>NT01CX_0460(guaB) Score=67.4 Pos=-243 [Clostridium novyi NT]
CGCAGAGAAATAAAATATCACTTATATATACCCTGGATATGGCAGGGAGTTTCTACCGGAAACCTAAAATTTCCGACTATGAGTGAGTGGACTTGTTGC
>NT01CX_2252(pbuO) Score=79.2 Pos=-169 [Clostridium novyi NT]
AACAGAATATTAATCACGTACTCATATAAGCCCAGAAATAAGGTCGGGCGTTTCTACCAAATACCGTAAATATTTGACTATGAGTAGTCTAGTGTAAATT
>NT01CX_0402(xpt) Score=75.6 Pos=-255 [Clostridium novyi NT]
AATTAAATAATGTTCGTAAATTCGTATATGATCGAAAATATGGTTCGATTGTTTCTACCAAATGGCCTTAAACTATTTGACTACGGGTGTTTATATTCATGTA
# RNA - PyrR
>NT01CX_0192(pyrP) Score=55.4 Pos=-215 [Clostridium novyi NT]
GATAATCTTTAATACGGTCCAGAGAGGCTGACAAGATTGATAGTTTAGCTATGTTTGTATTTATATTTAAGATAACTCAAACTTCTTGTCAGTAGGCAAGAGGTTTTTTTATT
>NT01CX_0192(pyrP) Score=43.8 Pos=-86 [Clostridium novyi NT]
GATAACTTTTTAAATCAGTCCAGTGAGGCTGAAAAAAGGAGAAGATGAATTTCTCCTTAGAATAAAAAATATAAGGAGGTTTTTTTA
>NT01CX_0395(pyrB) Score=33.2 Pos=-180 [Clostridium novyi NT]
GCGTGCCTTTAATTCAGTACGAGATACTGGAAAGGGTAGACAAAGGGTTTTTGTCTTTATAAGTATATAGAGCGTATTTTATTATATATTAGTATACTCATGCCTTTCCAAAATCTTGGAAAGGCATTTTTTAT
>NT01CX_0383(carA) Score=50.9 Pos=-245 [Clostridium novyi NT]
ATTAACCTTTAATTTAGTCCAGAGAGATTAGAAAGGTGGTACTTAGAGTGTGGATATTTACTATGCTATAAGTATGACGTTTATAATGATGGTAAATTTAAAAACCTTCTGCTCTGTGGCAGAAGGTTTTTTTATT
>NT01CX_0383(carA) Score=35.6 Pos=-365 [Clostridium novyi NT]
AAAGTCCTTTAAGGTAGTCCGAGAGACTAATAAGGTGCTTATATTTATAATTTTAATATAGTTATGATATGGTATCCTTCTGTCTTAAAGCAGAAGTTTTTTTATA
# RNA - SAM
>NT01CX_1210(metY) Score=99.7 Pos=-203 [Clostridium novyi NT]
TCTTATCAAGAGTGGTTGAGGGACTGGCCCTATGAAACCCGGCAACAACTAATTTTCATTTAAATTAGTAATGTGCTAATTCCAGCAGGAAATTTTCCTGAAAGATAAGAGGT
>NT01CX_0186(metN) Score=92.2 Pos=-181 [Clostridium novyi NT]
AGTCTTATCAAGAGAGGTGGAGGGACTGGCCCTATGAAACCCGGCAACCAGTATACATTTTTAGTGTACAATGGTGCTAAATCCTGCAGTGTAAACTGAAAGATGAGGA
>NT01CX_0516(metK) Score=95.4 Pos=-176 [Clostridium novyi NT]
CATCTTATCAAGAGAGGTGGAGGGAATGGCCCTATGAAGCCCGGCAACCAGTATATAAATAAATACTAAGGTGCTAATTCCTGCAGTATAATCTGCAAGATAAGAA
# RNA - T-box(Ala)
>NT01CX_2280(alaS) Score=91.4 Pos=-254 [Clostridium novyi NT]
ATATTAGGCGATGATAAGAATGAGTAGGTAATTTGTTATTATTAAGAGAGGAAGTGGACGGTGCGAACTTCTTAATGCAAATATTGAAGCTATCTTGGAGTCATATTAAATTAAGAGGTATATGTACATAAATTACATTTTATATGTATTCATATATAACTAGGGTGGTACCGCGAAAACTTTCGTCCCTTGA
>NT01CX_1456(alaR) Score=111.2 Pos=-312 [Clostridium novyi NT]
AAAAGATTGTGATAAGGAAGAGTATATAAAAGGAGAATTTAAAGAGAGCTTGGAATGGTGAGAGCCTGGCAATGGAATTTTATAGAACGCAGCCTTTGAATCGCTTATTGAGAAATGAGAATTAAGTTTAATTCTTAAAATAGATACAGACGTGACCTCGCGTTATTGAGGAATGAAATTATAAGTTTCAGTAAAGAGAGTGCAATTTGCACTAATCAGGGTGGTACCGCGAAAACTCCTTCGTCCCTTTAGG
# RNA - T-box(Arg)
>NT01CX_1587(argS) Score=87 Pos=-295 [Clostridium novyi NT]
AAAATTCGATGATAAGGAGAGTATCTTTTTAAAATATAAAAGCGAGTAGAAGATGGTGTAAGTTCTACAATATTTTATTTAGAGAAAAGAACCTTTGAGAAGCTACTAAGTTATATTAAATTTTATGATGAGGTAAGCCGTTAACTGCGATAAAGTTATGAGGTGGACTAATTTTTAGTCAACTAGAGTGGTACCGCGGATATAACCGTCTCTATATA
# RNA - T-box(Asn)
>NT01CX_1233(asnS) Score=104.5 Pos=-315 [Clostridium novyi NT]
TAAAGATTATGAAGAGGAGAGTAAGTATAGAGCCTTGATTTTAGCGAGCTGATAATGGTGTGAGATCAGTATTAAGTCTATATGGAAGAACACCTCGGAATTTCTAACCGAAATTACATGTAAGAGTAGATTTAGACGAGACCAAACCGTTAAATTTGGGGAGCATAATAAATGTGCTTATTAAAGAGATCATATTTATGATAAGTTAGGTGGTACCGCGAATATATAACCTTCGTCCTGATAAA
# RNA - T-box(Cys)
>NT01CX_1391(cysE) Score=75.3 Pos=-305 [Clostridium novyi NT]
GAAATACAGTGAAGAAGGAAAGTAATATAAATTGTGCATTCAGAGAGGAAATCATATGCTGTGAGATTTCTATGTAAGATTTATGTGAAGTGCCCTTTGGAGTTTTGCACCGAATAAAGTAGGCTGCAACGGGATTACCCGTTATAGTAATAGAGCATAAAATTTAAATTATATTTTAAATGACGGTGCTTGAA
# RNA - T-box(Gly)
>NT01CX_1048(glyS) Score=92.2 Pos=-223 [Clostridium novyi NT]
AAAACACAATGACAAAGAAGAGTAATTTTAAGTTTTTAAAAGAGAGGTTGTGGGTGGTGTAAACAACTAAAAACTTACTATGAATGGAGCTTTGGAGTGTATGAATTTGTAAGGAGGGCTAATAGCCAAAAAGGGTGGAACCGCGGAAGTATGTTTTTCGTCCCTTTAGG
# RNA - T-box(Ile)
>NT01CX_2028(ilvC) Score=101.2 Pos=-482 [Clostridium novyi NT]
GAAAAACGAAGACGGGGAAGAGTAAGTAAAAGATAGTCTAAAGAGAGTGGGAAAAGGTGAGAGCCCATGACGAAGATTTTATTGAAGATCACCCCTGAGTTGCAAGCTGAAATAAGAGTAAGCTGAGCCGGCATTGCCGTTAAAATTAGAGTTATAAATTTGAGTGGTACCGCGATTACAGGATTCCTTCGCCTCATGGCA
>NT01CX_2028(ilvC) Score=104.1 Pos=-246 [Clostridium novyi NT]
GAAAAACGAAGACGGGGAAGAGTAAATAAAAGATAGTCTAAAGAGAGTGGGAAAAGGTGAGAGCCCATGACGAAGATTTTATTGAAAATCACCCCTGAGTTGCAAGCTGAAATAAGAGTAAGCTGAGCCGGCATTGCCGTTAAAGTTAGAGTTATAAATTTGAGTGGTACCGCGATTATAAGATTCCTTCGCCTCATGGAG
>NT01CX_1315(brnQ) Score=110.7 Pos=-386 [Clostridium novyi NT]
TAAATTCTATGAAGAGAAAAAGTAGGATATATTGTTGTTCCAAAGAGAGTTGGTGATTTGCTGAAAGCCAATGTTCGATGTATATTTGAAAATCATCTCTGAGAAGTAAAGCTGAAAGTTTAGTAAGTTTTATCGGAAATTTCACCGTTAAAAGAAAAGCGTATTATTTAGTACGTAATTGAGTGCTATGAAAATATAGTTTAGTTTTATATTTTTATAGAATTAGGGTGGTAACGCGAATATACCTCGTCCCTTTTAT
>NT01CX_0646(ileS) Score=83 Pos=-337 [Clostridium novyi NT]
ATTAATAACTATGAACAGGAAAAGTATTTAAGATATATGCTTACAGAGAGTAGGGGATGATGGGAACCCTATAGCTAAACCTTAAAGAAAATCACCTGGGAGTTGAAAACTGAAAAGGCTTTTTGCTGAGTAAGTTTATCCGTGATTTCGCGTTAAGAAATAGAGTATGTTA
# RNA - T-box(Leu)
>NT01CX_1372(leuS) Score=124.9 Pos=-270 [Clostridium novyi NT]
TGTTATTGCTTTGAAAAGGAGTAGTAGTATTTTTTTCAATTTAAGAGAGTTGTCGGTAGCTGCAAGACAATATTGATAATTTACGAACTTGCCTTTGAGCTTATCTGTAAGAAGCAGATACGGATTAAACCGTTATATTTTTTAAAGTGAAGCTTTAAGCTTAATTAGAGTGGTACCGCGGAAATTACACCTTTCGTCTCTTTA
>NT01CX_2428(brnQ1) Score=71.1 Pos=-381 [Clostridium novyi NT]
TCAAGACATTGACGGAGAGAAAAATACTATATTTTAATTACAGAGAACCAACATTTGCTGAGAGTTGGATATTAAACTAGTATATAATACTCACTCCTGAGTTGCCAATCTGAATTTATTTTAGTAAGATTGGACGGTTGTCACCGATATATGACTAAAGTTTAA
# RNA - T-box(Met)
>NT01CX_0697(metS) Score=66.3 Pos=-330 [Clostridium novyi NT]
AGAAAATGCAGTGAAAAGAAGAGTAATATGTGAAAGTGTATAAAGAGAGCCAGGATAGGTGAAAGCTGGTTACATGGAAATATATGAAGATGGTCTTGGAGCATAGTATCTGACTAATTTAGGGTATTACCGGTGCAACGGTTAGAATGCAAAGTGATAAAATTAACTTTTGTTAAGGAGTCACTTAT
# RNA - T-box(Phe)
>NT01CX_1767(pheS) Score=112.5 Pos=-273 [Clostridium novyi NT]
TTTAAACTATGATAGAGAGAGTAGATATAGAAATTTTTAAAGGGAGAAAAAGTCATAGACTGAGAGCTTTTTCAAAAGGAATATATTGAAGTTCACTCTGGAGTTCTAAGTGTGAAATTAAAGTAGCATTTAGCGGCATATGTCGATAAAATCTCAAGAGAATTGAAAATTGATATTTTCAATTAATAAGGGTGGTAACGCGGAATAACTTCGTCCCTAGTTT
# RNA - T-box(Pro)
>NT01CX_0337(proS2) Score=113.1 Pos=-300 [Clostridium novyi NT]
TTATGACTAAGATAAGGAATAGTAAAATTTCATTCTTTTCAAAGAGAAGAAACTATTTGGTGAGATGTTTCTAAAAGAATACTTTTGAACCAGCCTTTGAGTTCTGTACTGAAATTATAGTAGGATACAGCGGATTTTACCGTTATAAATTTGAGAGAATATATTAATTTAAATATATTAATAAGGGTGGTACCACCGTAAGCTCGGTCCCTATGGG
# RNA - T-box(Ser)
>NT01CX_0848(serS) Score=120.3 Pos=-274 [Clostridium novyi NT]
ATTTAAACCATTGAAGAGAATAGTAGCAATATATTTTAGTTTTAGAGAGTGAATGGGTGGTGCAAATTCATACTAAAAGTTTTGTGAATCCAACTCTGAGGGATTGTGATAAACAATACGGTAAAACCGTTAATATTTAAAGTGGGTTTATTTATAAACCAATTAGGGTGGCAACGCGGAGTCCTTTCGTCCCTACA
>NT01CX_0729(yurG) Score=110.5 Pos=-352 [Clostridium novyi NT]
TACAAAAGCTATGAAGGGTAGCAGTAAATAAACTTTCATTTTAAGAGAGTGGATGTTTGGTGTGAATCCATAATGAAACTTATTGAATCCGACCTGAAGCTGCATTGGAGTAACAACCGATGCCGGAGTTATCCGTTACATAATGAGGCTGCAATAAAGCAGTAAACTAAGGTGGTACCACGTAGATAACTAAGAATATATCTCCGTCCTTGAA
# RNA - T-box(Thr)
>NT01CX_1760(thrZ) Score=95.1 Pos=-303 [Clostridium novyi NT]
TAAAGACAATGATAAGGAAGAGTAAATAAAATACTGTTCTAAGAGAGAAAAATCCATTGGCTGTAAGATTTTTTGTTCAAGTGTTATTGAAAACCACCTTTAAGTTGAGTATTGAAATATTAGTAGATATTTTCCGCCGCAAGCGTTAAAAGCTATGAGATAACAATAATAATGTATACAAATATATTATACTTTATTGTTAATTTGGGTGGAATCGCGATAAAACTCGCCCCATTTTT
# RNA - T-box(Trp)
>NT01CX_1342(trpB) Score=60.2 Pos=-375 [Clostridium novyi NT]
ACAAGTCATTGACTGGAAGTAGTAGCTTTAAGTATTTGTTTCAGCGAGTTGGAGTTAGGTGTGATGTCCAATAACAAATCTTATAGTGAATGGATCCATGAGACGCTAGGTGAAATTTTTTAGAGTAGCTAATGCCGTGATTCTCACGTTATAGAGATAGGATATAT
>NT01CX_0132(trpP) Score=93.7 Pos=-383 [Clostridium novyi NT]
TAAAATCGTGGATCAGGATTAGTACCTAAAGTACTAAGTTCTAGAGAGTTGAGGATGGTGGAATCTCAATACAATAGACTTTAGCGAATGGACCTGTTAGATGTAAGCCGAAATCATTTTGAAAGTAGTCTTTACCGTGTTTCGCACGTTATAGCGATAGGATATGTTAGTATCTGAAAGAGATGTATTATTAAATAATTTTATTTTTAATAATATAATTTAGGTGGCAACGCGAATACACTTCGCCCTATTATT
# RNA - T-box(Tyr)
>NT01CX_1364(tyrS) Score=116.2 Pos=-279 [Clostridium novyi NT]
GAAAGATTTTGATGGAAAGAAGTAGCTTTATGATTCATGAAGAGAGCTAGTGGTTGGTGTGAACTAGTTGATGAGTTTAGTGAAATACATTCTTGAATTTTATACTGAACGGTTTAAACTTAGTAGGTTGATACGGATATCCCAACGTTATAGGGAAATGAGCGAATATGTATAAACATATTAACTTGGGTGGTACCACGGAAAAATTTCGTCCCTTTATA
# RNA - T-box(Val)
>NT01CX_1727(valS) Score=107.6 Pos=-282 [Clostridium novyi NT]
TAAAAACAGAGAAAAAGAGGAGTAGGGATAAGGAGTATTAAGAGAGGAAAGTTTATTAGCTGAGAGACTTTCTATATAAATTATCTTGAAGGTAGCTTTGGAGTTTCTTTATTGAAATAATAGTAGATAAAGACGGTGGTCACATCGTTAATTTTAATGAGTGCTTGATTGATTTCGAGAATTAAGGTGGTAACGCGCATTGTCGTCCTTTGGTG
# RNA - glmS
>NT01CX_1166(glmS) Score=81.5 Pos=-221 [Clostridium novyi NT]
TTTGAGTAAGTTCGCCTTAACCAAATCGTAGATTTGGAGGCTCACTTAAGTTGACGAGGATGGGGAGTATCGAGAATTCGGCGGATGTCCCACGGTATTTATGTACTACCGATAACAGTTAGCAAATCTAAAAAGCGATTTTTAGCACAAATCTAACTAGGTACATGATGG
# RNA - TPP
>NT01CX_0246(thiD) Score=77.2 Pos=-275 [Clostridium novyi NT]
TTAAGTTGCAGGGGTGCCTAACTTAGGCTGAGAAGAAATTTTTCTAACCCTTAGAACCTGAAACTAGGTAATTCTAGCGGAGGAAGCAATATAGTTTCATATTT
>NT01CX_0092(thiC) Score=62.9 Pos=-202 [Clostridium novyi NT]
ATCGTTTGCGGGGGAGCCTTGAGCTGAGAAGGATAAAACCTGACCCTTAGAACCTGATGTAGTTAGTACTATCGTAGGGAAGCAACTAGACTAATTGAAT
>NT01CX_1441(thiT) Score=70.4 Pos=-317 [Clostridium novyi NT]
TTTTTAACTAGGGGTGCTTACCTAAATGTAGGCTGAGAGATAAAGTTTATCAACCCTTGTACCTGATGTGGATAATGCCAACGTAGGAAAAGTTATTAGTTATAAGATT
# TF - Zur: NT01CX_0363
>NT01CX_2391(yciC) Score=6.3 Pos=-57 [Clostridium novyi NT]
TTAGTGCAAATGATTTGCATTTG
>NT01CX_2337(fld) Score=5.2 Pos=-40 [Clostridium novyi NT]
AATATGAAAATGATAATCAATAT
>NT01CX_2337(fld) Score=5.2 Pos=-34 [Clostridium novyi NT]
AAAATGATAATCAATATCAATAA
>NT01CX_2431(feoA) Score=5.6 Pos=-87 [Clostridium novyi NT]
TAAATGAATTTCATTTTCAATTG
>NT01CX_0482(znuA2) Score=5 Pos=-175 [Clostridium novyi NT]
TATATGAAAAACATTGTCATTAT
>NT01CX_0482(znuA2) Score=6.4 Pos=-42 [Clostridium novyi NT]
TTTTTGCAAATGATTTGCATTTT
# TF - NiaR: NT01CX_0853
>NT01CX_0090(nadA) Score=5.9 Pos=-61 [Clostridium novyi NT]
TTAAGGTGTATATACACATGTG
>NT01CX_1651(niaX) Score=6.5 Pos=-42 [Clostridium novyi NT]
TACTACTGTATATACAGTAGTA
# RNA - ydaO-yuaA
>NT01CX_1494(lysM/COG3773) Score=88.3 Pos=-135 [Clostridium novyi NT]
CATCTGAACAATGCCGAATCTCCATTTGGAGTACGGGGGATATATTTTGGGGTGAAACTTATTTTTATATAAGTAGGGTTCCTCAATCCTAACCCGTCAACTAACCTCGGAGGCAAAACGAGGAGGAAAT
# RNA - THF
>NT01CX_2426(folT) Score=90.7 Pos=-170 [Clostridium novyi NT]
AGGCAGAGTAGGTATTTGTGCGTTAAGTGTCATTGGAACGGGAAGTTGTCCATTGAACGAAAAATGAATTTATTTCATTTGCGGTGCATATATCGCATTCCGCTGCC
# TF - CcpA: NT01CX_0643
>NT01CX_0754(lrgA) Score=4.2 Pos=-140 [Clostridium novyi NT]
AATAAAATATTTTATT
>NT01CX_0749(cca) Score=4 Pos=-30 [Clostridium novyi NT]
TTAAAAATTATATAAT
>NT01CX_0749(cca) Score=4.2 Pos=-131 [Clostridium novyi NT]
AAGAAAAATTTTATTT
>NT01CX_1623 Score=4 Pos=46 [Clostridium novyi NT]
TTGTTAAAGCTTTAAA
>NT01CX_0100 Score=4.1 Pos=-65 [Clostridium novyi NT]
TTGAAAATAAATTTAT
>NT01CX_1854(nifJ2) Score=4.1 Pos=-193 [Clostridium novyi NT]
TTGAAAAAGTGTACAA
>NT01CX_1380(agaY) Score=4.2 Pos=-156 [Clostridium novyi NT]
TTTAAAAAAATTTTTT
>NT01CX_0292(agaS) Score=4.1 Pos=-75 [Clostridium novyi NT]
ATAAAAATAATTTTTT
>NT01CX_1609(glcA) Score=4.1 Pos=-124 [Clostridium novyi NT]
TTTTAAATGTTAATAA
>NT01CX_1609(glcA) Score=4.2 Pos=-32 [Clostridium novyi NT]
AAGTAAAAAATTAAAA
>NT01CX_1593 Score=4.1 Pos=-56 [Clostridium novyi NT]
AATAAAAATATTAAAT
>NT01CX_0643(ccpA) Score=4.4 Pos=-61 [Clostridium novyi NT]
TTTTAAATGTTTTATA
>NT01CX_1328(yxkH) Score=4.1 Pos=-56 [Clostridium novyi NT]
ATAATAAAGATTATAA
>NT01CX_1328(yxkH) Score=4 Pos=-32 [Clostridium novyi NT]
ATTATAAAAATTAATT
>NT01CX_0609(glpF) Score=4.2 Pos=-104 [Clostridium novyi NT]
ATACAAACGTTTTCAA
>NT01CX_0608(glpK) Score=3.9 Pos=-54 [Clostridium novyi NT]
ATGAAAAATAAATTAT
>NT01CX_0606(glpF) Score=4.2 Pos=-107 [Clostridium novyi NT]
TATAAAAAGTTATATT
>NT01CX_0689(dhaK) Score=4 Pos=-33 [Clostridium novyi NT]
TATAAAAGGTTTTCAA
>NT01CX_0284(aspC1) Score=4.1 Pos=-128 [Clostridium novyi NT]
CTGTAAACGTTATTAT
>NT01CX_2313(mepA) Score=4.2 Pos=-96 [Clostridium novyi NT]
ATTAAATTGTTTTTAT
>NT01CX_1049(murD) Score=4.6 Pos=-152 [Clostridium novyi NT]
ATAAAAAAGTTTTTAT
>NT01CX_2122(rny) Score=4.7 Pos=-223 [Clostridium novyi NT]
ATTAAAAAGTTTTTAT
>NT01CX_0485 Score=4.4 Pos=-194 [Clostridium novyi NT]
ATATAAATGATTTAAA
>NT01CX_0485 Score=4.6 Pos=-74 [Clostridium novyi NT]
ATGAAAAAGATAATAT
>NT01CX_1403(cggR) Score=4.1 Pos=-111 [Clostridium novyi NT]
TTGATAACTTTTTTTA
# TF - Rex: NT01CX_0475
>NT01CX_0385(pflD) Score=5.4 Pos=-198 [Clostridium novyi NT]
TAGATAAATAATTAACAT
>NT01CX_1610(etfB) Score=5.2 Pos=-70 [Clostridium novyi NT]
TTGAAAAATATATAACAA
>NT01CX_0604(hbd) Score=5.4 Pos=-233 [Clostridium novyi NT]
ATGATATATATTTAACAA
>NT01CX_0604(hbd) Score=5.6 Pos=-46 [Clostridium novyi NT]
AAGTTAAAAAATTAACAA
>NT01CX_0474(crt) Score=5.2 Pos=-69 [Clostridium novyi NT]
TTGTTACTATATTAACAA
>NT01CX_2324(bcd) Score=4.7 Pos=-114 [Clostridium novyi NT]
GTGTTTTTTTTTTAACAA
>NT01CX_0464(hyd) Score=5.3 Pos=-97 [Clostridium novyi NT]
ATGTTACATATTTAACAA
>NT01CX_0468(bdh) Score=5.7 Pos=-61 [Clostridium novyi NT]
TTGTTAATAAAATAACAA
>NT01CX_0309(COG1115) Score=5 Pos=-30 [Clostridium novyi NT]
TTGAGAGAAATTTAACAA
>NT01CX_0278(ctfA) Score=5.4 Pos=-90 [Clostridium novyi NT]
ATGACAAAAATTTAACAA
# TF - CzrA: NT01CX_1198
>NT01CX_1198(czrA) Score=7.1 Pos=-35 [Clostridium novyi NT]
CATATGAATATATGTTCAAATG
# TF - AgaR: NT01CX_0293, NT01CX_0302
>NT01CX_0292(agaS) Score=5.1 Pos=-53 [Clostridium novyi NT]
TAACTGGTAATGACAACACA
>NT01CX_0293(agaR) Score=4.8 Pos=-41 [Clostridium novyi NT]
TAAGTGGTATGTACAACATG
>NT01CX_0299(NT01CX_0299) Score=5.3 Pos=-235 [Clostridium novyi NT]
GAACTGGTAATGACAACATT
>NT01CX_0299(NT01CX_0299) Score=5.8 Pos=-317 [Clostridium novyi NT]
AATGTGGTAATAACAACATT
>NT01CX_0302(agaR) Score=4.1 Pos=-350 [Clostridium novyi NT]
CAACTTGTTCGTACAAGTTG
>NT01CX_0301(Cbei_1383) Score=4.1 Pos=-76 [Clostridium novyi NT]
CAACTTGTACGAACAAGTTG
# TF - YhcF: NT01CX_0788
>NT01CX_0788(yhcF) Score=6.8 Pos=-64 [Clostridium novyi NT]
GTGTATTAATATATTAATACAC
# TF - MalR1: NT01CX_0963
>NT01CX_0963(malR1) Score=6.1 Pos=-75 [Clostridium novyi NT]
TACCAGTAACGTTTCCAAAA
# TF - RbsR: NT01CX_0161
>NT01CX_0166(rbsK) Score=6.5 Pos=-65 [Clostridium novyi NT]
TAATTTAACCGGTTAAATTA
# TF - YtrA: NT01CX_0244
>NT01CX_0244(ytrA) Score=7.4 Pos=-121 [Clostridium novyi NT]
AAGTGTACTAGTTAAATTAATACACTT
# TF - Cbei_4343: NT01CX_2435
>NT01CX_2435(Cbei_4343) Score=9.2 Pos=-54 [Clostridium novyi NT]
TGTATATACTGTATATAAAGAATATATACAGTATATACA
# TF - NrdR: NT01CX_2257
>NT01CX_2366(nrdA) Score=4.4 Pos=-200 [Clostridium novyi NT]
CTACTTTATTTTGTAA
>NT01CX_1076(nrdD) Score=5 Pos=-31 [Clostridium novyi NT]
GTACAATATGTTGTGG
# TF - BirA: NT01CX_0898
>NT01CX_0019(bioY2) Score=9 Pos=-105 [Clostridium novyi NT]
TTGTTAAC----------------GTTGACAA
>NT01CX_0019(bioY2) Score=9.1 Pos=-47 [Clostridium novyi NT]
TTGTAAAC----------------GTTTACAA
>NT01CX_1467(bioY1) Score=9.1 Pos=-48 [Clostridium novyi NT]
TTGTAAAC----------------GTTTACAA
# TF - IscR: NT01CX_2284
>NT01CX_2284(iscR) Score=5.6 Pos=-41 [Clostridium novyi NT]
AGAATTCATAGTATAACACTCGGATTTAA
>NT01CX_2284(iscR) Score=5.9 Pos=-82 [Clostridium novyi NT]
TTAATGTTGACAAAAACACTCGGATTTGA
# TF - SdaR: NT01CX_0982
>NT01CX_0983(grtP) Score=6.4 Pos=-97 [Clostridium novyi NT]
TATTGTGCATTTGAACAATA
# TF - MntR: NT01CX_2309
>NT01CX_2309(mntR) Score=6.8 Pos=-164 [Clostridium novyi NT]
AAAATTAGCTTAGTCTAACTTT
>NT01CX_2308(feoA) Score=6.8 Pos=-65 [Clostridium novyi NT]
AAAGTTAGACTAAGCTAATTTT
# TF - HcpR: NT01CX_0590
>NT01CX_0589(frdX) Score=5.5 Pos=-89 [Clostridium novyi NT]
TGGTAACTTAGGTTACAT
>NT01CX_0590(hcpR) Score=5.5 Pos=-63 [Clostridium novyi NT]
ATGTAACCTAAGTTACCA
>NT01CX_0591(hcp) Score=5.8 Pos=-100 [Clostridium novyi NT]
TGGTAACATAAGTTACAT