# TF - SdhR: BB3683
>BB3339(aceA) Score=6.7 Pos=-124 [Bordetella bronchiseptica RB50]
ATTTTTGTCTTATATAAGATATAAGC
>BB3684(mdh) Score=7.8 Pos=-174 [Bordetella bronchiseptica RB50]
TCTTATGTCTTATATAAGATATAAGA
>BB3683(sdhR) Score=7.8 Pos=-140 [Bordetella bronchiseptica RB50]
TCTTATATCTTATATAAGACATAAGA
>BB1844(acnA) Score=6.4 Pos=-122 [Bordetella bronchiseptica RB50]
GATCAAGTCTTATATAAGACACAAGA
>BB1850(acnB) Score=6.3 Pos=-104 [Bordetella bronchiseptica RB50]
AGGCAAGTCTTATATAAGATATAAGA
# TF - PdxR2: BB2872
>BB2871(COG0325) Score=6 Pos=-38 [Bordetella bronchiseptica RB50]
TTTGTCATAGGACAAA
>BB2872(pdxR2) Score=6 Pos=-37 [Bordetella bronchiseptica RB50]
TTTGTCCTATGACAAA
# TF - ModE: BB3353
>BB0825(modA) Score=7.1 Pos=-95 [Bordetella bronchiseptica RB50]
TTCGTTATATATTCCACTACATAACGCT
# TF - PrpR: BB1351
>BB1342(acnA) Score=4.6 Pos=-122 [Bordetella bronchiseptica RB50]
AGTGTCAACTCT
>BB1342(acnA) Score=4.8 Pos=-29 [Bordetella bronchiseptica RB50]
ACTGTTGACAGT
>BB1351(prpR) Score=4.6 Pos=-39 [Bordetella bronchiseptica RB50]
AGAGTTGACACT
>BB1341(BAV0623) Score=4.8 Pos=-182 [Bordetella bronchiseptica RB50]
ACTGTCAACAGT
>BB1341(BAV0623) Score=4.6 Pos=-89 [Bordetella bronchiseptica RB50]
AGAGTTGACACT
# TF - GlcC: BB0096
>BB0095(glcB) Score=5.3 Pos=-233 [Bordetella bronchiseptica RB50]
ACTGGTATGACCACG
>BB0095(glcB) Score=5.6 Pos=-124 [Bordetella bronchiseptica RB50]
ACTGGTATGACCAGT
>BB0096(glcC) Score=5.3 Pos=-25 [Bordetella bronchiseptica RB50]
CGTGGTCATACCAGT
>BB0096(glcC) Score=5.6 Pos=-134 [Bordetella bronchiseptica RB50]
ACTGGTCATACCAGT
# TF - NrdR: BB4347
>BB4376(nrdA) Score=5.3 Pos=-157 [Bordetella bronchiseptica RB50]
ACACTACATCTTGTGG
>BB4376(nrdA) Score=5.5 Pos=-189 [Bordetella bronchiseptica RB50]
TCACTAGAATTAGTGC
# TF - GabR: BB1808, BB1885
>BB1807(gabT) Score=11.8 Pos=-136 [Bordetella bronchiseptica RB50]
TTGGTTC-(16)-GTGGTTC-(9)-GGGCCAT
>BB1884(dppA) Score=10.3 Pos=-418 [Bordetella bronchiseptica RB50]
GTGGCAC-(17)-TTGGACC-(8)-GTACCAA
# TF - Bpet4349: BB4672
>BB4671(sgaA) Score=4.1 Pos=-35 [Bordetella bronchiseptica RB50]
AGTTGGTATACCAATA
>BB1501(Bpet4354) Score=4 Pos=-103 [Bordetella bronchiseptica RB50]
ATCTTGCATGTATGAT
>BB1501(Bpet4354) Score=4.1 Pos=-91 [Bordetella bronchiseptica RB50]
TGATTGCATTCAATCG
>BB4672(Bpet4349) Score=4.1 Pos=-179 [Bordetella bronchiseptica RB50]
TATTGGTATACCAACT
# TF - PdxW: BB2428
>BB2429(PF00583) Score=13 Pos=-118 [Bordetella bronchiseptica RB50]
CATGGCTCTAT-(13)-CGTGGCACTTT-(2)-ATCATGCCACG
# TF - FdsR: BB1324
>BB1324(fdsR) Score=6.1 Pos=-88 [Bordetella bronchiseptica RB50]
ATATGTTATTCAGTACATAT
>BB1323(fdsG) Score=6.1 Pos=-81 [Bordetella bronchiseptica RB50]
ATATGTACTGAATAACATAT
>BB1323(fdsG) Score=5.6 Pos=-158 [Bordetella bronchiseptica RB50]
ATATGTCATTTATTTCTTAT
# TF - ModE3: BB2126
>BB2126(modE3) Score=6.1 Pos=-100 [Bordetella bronchiseptica RB50]
ATATGAAACGAATTGCATAG
>BB2127(tupA) Score=6.1 Pos=-81 [Bordetella bronchiseptica RB50]
CTATGCAATTCGTTTCATAT
# TF - HrcA: BB3939
>BB4835(rpoH) Score=7.4 Pos=-36 [Bordetella bronchiseptica RB50]
TTAGCACTCGATTGCGTGGAGTGCTAA
>BB0963(groS) Score=7.9 Pos=-91 [Bordetella bronchiseptica RB50]
TTAGCACTCGTCGCCGGTGAGTGCTAA
# TF - LexA: BB2271
>BB3086(imuA) Score=6.3 Pos=-35 [Bordetella bronchiseptica RB50]
TACTGTATATTTATACAGTG
>BB1810(uvrD) Score=6.3 Pos=-41 [Bordetella bronchiseptica RB50]
TTCTGTATAAATATACAGTA
>BB4032(uvrA) Score=6.1 Pos=-150 [Bordetella bronchiseptica RB50]
TACTGTTTATTTATACAGCA
>BB2076(recA) Score=5.7 Pos=-135 [Bordetella bronchiseptica RB50]
CACTGGATTTTTATCCAGTA
>BB3446(PF4055) Score=5.3 Pos=-25 [Bordetella bronchiseptica RB50]
TACTGCGTTTTTGTACAGTA
>BB2271(lexA) Score=5.2 Pos=38 [Bordetella bronchiseptica RB50]
CGCTGTATATCCATACAGTC
# TF - OapR: BB0870
>BB0869(oapT) Score=14.4 Pos=-204 [Bordetella bronchiseptica RB50]
TTCTGTACAGTT-(11)-AACTACACAGTT-(15)-GATTGTATATTT
# TF - BAV2922: BB4262
>BB4263(PF00892) Score=19 Pos=-153 [Bordetella bronchiseptica RB50]
CAACTGTCATG-(10)-CAGGCCAGTGA-(15)-AAAGTGTACCG-(0)-GTACTGTACCG
# TF - YdcR: BB1241
>BB4510(COG2863) Score=8.1 Pos=-123 [Bordetella bronchiseptica RB50]
ATCTGCTATGGTCTC----------ATCTGCGCCTGTCCC
>BB1238(cydA) Score=7.6 Pos=-129 [Bordetella bronchiseptica RB50]
AACTGATATGCTTTT----------ATCTGTACTGATTTC
>BB1238(cydA) Score=7 Pos=-124 [Bordetella bronchiseptica RB50]
ATATGCTTTTTTTAC----------ATCTGTACTGATTTC
>BB1239(cydB) Score=6.7 Pos=-162 [Bordetella bronchiseptica RB50]
CCCTGCTGCTGTTCG----------ATCTGATCGTGTTCG
# TF - PdxR: BB0707
>BB0709(PF03594) Score=9.5 Pos=-114 [Bordetella bronchiseptica RB50]
AAGTGGTCTG-(13)-ATGTGGCATG-(6)-CCTGCCACAT
# TF - BAV2320: BB2054
>BB2055(BAV2318) Score=19.4 Pos=-732 [Bordetella bronchiseptica RB50]
ACAGGCACAGTTGT-(11)-ACCATAACAGAGTT-(8)-AGATCTGTATCGAT-(11)-GTTGCTGTGCCTGT
# TF - UxuR2: BB2654
>BB2654(uxuR2) Score=4.7 Pos=-49 [Bordetella bronchiseptica RB50]
TTAGTGGCCTGACCACTGG
# TF - MlnR: BB3362
>BB3362(mlnR) Score=6.7 Pos=-37 [Bordetella bronchiseptica RB50]
TTATTCATAATTATGAATTA
# TF - MetR: BB2078
>BB2079(metE) Score=5.7 Pos=-108 [Bordetella bronchiseptica RB50]
ATGAATAATACTCAA
>BB2079(metE) Score=5.2 Pos=0 [Bordetella bronchiseptica RB50]
ATGACTATTATTCAT
>BB2078(metR) Score=5.2 Pos=-176 [Bordetella bronchiseptica RB50]
ATGAATAATAGTCAT
>BB2078(metR) Score=5.7 Pos=-68 [Bordetella bronchiseptica RB50]
TTGAGTATTATTCAT