# TF - NsrR: Bpro_4724
>Bpro_4720(PF10006) Score=4.8 Pos=-58 [Polaromonas sp. JS666]
GGTGCATCTCAAATACACC
# TF - HexR: Bpro_0750
>Bpro_0751(zwf) Score=5.5 Pos=-74 [Polaromonas sp. JS666]
GTGAAACTAAATTACAA
>Bpro_4634(pykA) Score=5 Pos=-26 [Polaromonas sp. JS666]
CGGGAACTAAATTACAG
>Bpro_3551(edd) Score=4.7 Pos=-34 [Polaromonas sp. JS666]
CCGTAATAAAGTTACAT
>Bpro_0752(tal) Score=4.1 Pos=-95 [Polaromonas sp. JS666]
TTGTAATTTAGTTTCAC
# TF - NrdR: Bpro_2875
>Bpro_1107(nrdA) Score=5.5 Pos=-215 [Polaromonas sp. JS666]
ACACTACAGGTAGTGG
>Bpro_1107(nrdA) Score=5.2 Pos=-183 [Polaromonas sp. JS666]
ACCCTAGGTATAGTGT
# TF - Zur: Bpro_1677
>Bpro_1677(zur) Score=7 Pos=27 [Polaromonas sp. JS666]
ATAATGCAACTAGATTGCGTTAT
# TF - NorR: Bpro_3407
>Bpro_3407(norR) Score=4.6 Pos=-226 [Polaromonas sp. JS666]
TACGGTGGATTTGACGATG
>Bpro_3408(hmp) Score=4.6 Pos=23 [Polaromonas sp. JS666]
CATCGTCAAATCCACCGTA
# TF - HutC: Bpro_1165, Bpro_1044
>Bpro_1159(COG2855) Score=5.3 Pos=-120 [Polaromonas sp. JS666]
CAACTTGTATATACAAGCGA
>Bpro_1164(hutU) Score=5.7 Pos=-99 [Polaromonas sp. JS666]
CAAGTTGTATAGACAACTAC
>Bpro_1158(COG1732 (OpuBC)) Score=5.3 Pos=-158 [Polaromonas sp. JS666]
TCGCTTGTATATACAAGTTG
>Bpro_1165(hutC) Score=5.7 Pos=-98 [Polaromonas sp. JS666]
GTAGTTGTCTATACAACTTG
>Bpro_1043(hutH) Score=5.6 Pos=-25 [Polaromonas sp. JS666]
CAACTTGTATATACAGGACT
>Bpro_1047(hisX) Score=5.4 Pos=-109 [Polaromonas sp. JS666]
TTACCTGTATATACAGGTTG
>Bpro_1047(hisX) Score=4.7 Pos=-231 [Polaromonas sp. JS666]
ATACCTGTATAGACAGCGCA
# TF - IscR: Bpro_2177
>Bpro_2177(iscR) Score=6.3 Pos=-154 [Polaromonas sp. JS666]
ATACTTGACGAAAACAGTCAGGAAC
# TF - NtrC: Bpro_1810
>Bpro_1807(glnA) Score=5.6 Pos=-216 [Polaromonas sp. JS666]
TGCGCTAAATTGGTGCA
>Bpro_1807(glnA) Score=4.9 Pos=-242 [Polaromonas sp. JS666]
GGCCCCGAATTGGTGCG
>Bpro_0182(CHP02001) Score=5.5 Pos=-153 [Polaromonas sp. JS666]
TGCGCCAACTTGGTGCA
>Bpro_3273(narK) Score=4.8 Pos=-145 [Polaromonas sp. JS666]
TGCACGCAATATGTGCA
>Bpro_3273(narK) Score=4.8 Pos=-48 [Polaromonas sp. JS666]
TGCACTAACTTTGTGAA
# TF - LexA: Bpro_2954
>Bpro_2954(lexA) Score=5.7 Pos=-96 [Polaromonas sp. JS666]
TACTGGATATTAAAACAGGT
>Bpro_2954(lexA) Score=6.1 Pos=-115 [Polaromonas sp. JS666]
AACTGGATGAAAATACAGTT
>Bpro_2386(imuA) Score=6 Pos=-56 [Polaromonas sp. JS666]
TACTGTACATAAATACAGTA
>Bpro_3135(PF04055) Score=5.3 Pos=-137 [Polaromonas sp. JS666]
AACTGGGTATTTATCCAGTA
>Bpro_4982(umuD) Score=5.6 Pos=-10 [Polaromonas sp. JS666]
TACTGGATGGATGTACAGTA
>Bpro_3165(parE) Score=5.3 Pos=-114 [Polaromonas sp. JS666]
AACTGGGTATTTATCCAGTA
>Bpro_4685(recA) Score=4.2 Pos=-146 [Polaromonas sp. JS666]
AACTGACTAAAAATAGGGTT
>Bpro_0200(radA) Score=5.7 Pos=-30 [Polaromonas sp. JS666]
TACTGGTTGTTTGTACAGTA
# TF - LiuR: Bpro_4192
>Bpro_4192(liuR) Score=6.3 Pos=-111 [Polaromonas sp. JS666]
TTTGACGTTTACGTAAAC
>Bpro_4191(paaI) Score=6.6 Pos=-135 [Polaromonas sp. JS666]
ATTGACGTTTACGTAAAC
>Bpro_4191(paaI) Score=5.3 Pos=-129 [Polaromonas sp. JS666]
GTTTACGTAAACGTCAAT
>Bpro_4054(mcm) Score=5.7 Pos=-41 [Polaromonas sp. JS666]
GTTTACGTAAACGTCAAC
>Bpro_4054(mcm) Score=6.6 Pos=-47 [Polaromonas sp. JS666]
ATTGACGTTTACGTAAAC
>Bpro_3143(etfB) Score=5.1 Pos=-40 [Polaromonas sp. JS666]
GTTTACGTCAACGTCAAT
>Bpro_3143(etfB) Score=5.6 Pos=-46 [Polaromonas sp. JS666]
GCTTACGTTTACGTCAAC
>Bpro_3093(paaH) Score=5.5 Pos=-63 [Polaromonas sp. JS666]
GTTTACGTCAACGTCAAC
>Bpro_3093(paaH) Score=6.4 Pos=-69 [Polaromonas sp. JS666]
ATTGACGTTTACGTCAAC
# TF - FadP: Bpro_3958
>Bpro_3958(fadP) Score=5.7 Pos=-35 [Polaromonas sp. JS666]
TAGAACGATCGTTCGT
>Bpro_3143(etfB) Score=5.7 Pos=-142 [Polaromonas sp. JS666]
TAGAACGACCGTTCTT
>Bpro_4459 Score=5.5 Pos=-56 [Polaromonas sp. JS666]
AAGAACGACCGTTCTA
>Bpro_2573(fadB) Score=4.9 Pos=-86 [Polaromonas sp. JS666]
AAGAACGGTCGTACTA
# TF - VanR: Bpro_3386, Bpro_2134
>Bpro_3387(vanA) Score=4.9 Pos=-18 [Polaromonas sp. JS666]
TGTATACA
>Bpro_3387(vanA) Score=4.1 Pos=-81 [Polaromonas sp. JS666]
TGAATACA
# RNA - TPP
>Bpro_0037(thiC) Score=75.4 Pos=-182 [Polaromonas sp. JS666]
AAAGCTTGTCGGGGTGCCAAAGATGATTCATCTGAGGCTGAGATCGCAGATGCGAGACCCGCCGAACCTGATCGGGATCATGCCCGCGTAGGGAACAAGGCACTTGGCTCCGG
>Bpro_2332(cytX) Score=35.4 Pos=-171 [Polaromonas sp. JS666]
GTGCATCCGCTGGGAATGTCGCTGCCTGCCGCAGTGGCGCGCAGCGACTGAGAAAGATCCTTTGAACCCGATTGAAGTCATCCTCGCGCAGGGAAGCATGTGTCCAGCTGC
# TF - HrcA: Bpro_1303
>Bpro_0760(groS) Score=7.2 Pos=-121 [Polaromonas sp. JS666]
TTAGCACTCGATGGTATTGAGTGCTAA
>Bpro_1256(rpoH) Score=7 Pos=-57 [Polaromonas sp. JS666]
TTAGCACTCTCTCCAATGGAGTGCTAA
# TF - SoxR: Bpro_1373
>Bpro_1374(PF03992) Score=6.7 Pos=-83 [Polaromonas sp. JS666]
ACCTCAACTTTACTTGAGGT
>Bpro_1373(soxR) Score=6.7 Pos=-33 [Polaromonas sp. JS666]
ACCTCAAGTAAAGTTGAGGT
# TF - MerR: Bpro_4798, Bpro_2232
>Bpro_2231(merT) Score=6.1 Pos=-63 [Polaromonas sp. JS666]
ACTCCGTACATTACTACGGAAA
>Bpro_4797(merT) Score=6.7 Pos=-34 [Polaromonas sp. JS666]
ACTCCGTACTTAAGTACGGAAG
# TF - CadR-PbrR
>Bpro_3481(czcD) Score=5.3 Pos=-60 [Polaromonas sp. JS666]
ACCTTGAAGTGGGTCCAGGGT
# RNA - SAH_riboswitch
>Bpro_0174(metH) Score=48.5 Pos=-110 [Polaromonas sp. JS666]
AACCCAAGGAGCGTTGCAGCGAAGCATTGATTCGTCAGGCTTGGGTCACCGGCGTGTTCCCCGAAGCGCCTGCAGCAACGACGCTCACCTTGAGC
>Bpro_4132(ahcY) Score=52.7 Pos=-173 [Polaromonas sp. JS666]
GCTTCCTGAGGAGCGTTGCAACCCACATCACGTGGACCAGGCTCAGGACTTCATTGCAACCACGCTCACCCGCA
# TF - CueR: Bpro_4873, Bpro_3495
>Bpro_3497(copZ2) Score=5 Pos=-26 [Polaromonas sp. JS666]
ACCTTCCCACAGTCGGAAGCA
>Bpro_4871(copZ2) Score=5.6 Pos=-218 [Polaromonas sp. JS666]
ACCCTGCCCCCGTGGGAAGGT
>Bpro_4872(copA) Score=5.7 Pos=-84 [Polaromonas sp. JS666]
ACCCTGCCATGATGGTAAGGT
>Bpro_3496(copA) Score=5.4 Pos=-72 [Polaromonas sp. JS666]
ACTTTCCAACAGTGGCAAGGT
# TF - PhnR2: Bpro_3219, Bpro_4693
>Bpro_3219(phnR2) Score=5.2 Pos=-68 [Polaromonas sp. JS666]
ATTGTTGACAAT
>Bpro_3218(phnT) Score=5.2 Pos=-148 [Polaromonas sp. JS666]
ATTGTCAACAAT
>Bpro_4694(phnS) Score=4.8 Pos=-161 [Polaromonas sp. JS666]
AATGTCAACAAT
>Bpro_4693(phnR2) Score=4.8 Pos=-30 [Polaromonas sp. JS666]
ATTGTTGACATT
# TF - Bpro_5109: Bpro_5109
>Bpro_5109(Bpro_5109) Score=5.7 Pos=-80 [Polaromonas sp. JS666]
ACGTGAATACGTATTCACAG
>Bpro_5109(Bpro_5109) Score=6 Pos=-26 [Polaromonas sp. JS666]
TTATGACTACGTATTCAAAA
# TF - ModE3: Bpro_1757
>Bpro_0936(fdoX) Score=5.8 Pos=-48 [Polaromonas sp. JS666]
GTATGCAAACCGTTGCATAC
>Bpro_1758(tupA) Score=5.8 Pos=-85 [Polaromonas sp. JS666]
CTATGCAAACCCATTCATAA
# TF - ModE2: Bpro_2496
>Bpro_2496(modE2) Score=6.9 Pos=-103 [Polaromonas sp. JS666]
TTCGCTATATTTAATGGAATATAGCGAA
>Bpro_2497(modA) Score=6.9 Pos=-99 [Polaromonas sp. JS666]
TTCGCTATATTCCATTAAATATAGCGAA
# TF - Bpro_5165: Bpro_5165
>Bpro_5163(COG1573) Score=6.7 Pos=-172 [Polaromonas sp. JS666]
TTGTGGTGCA--------------CTTTGATGCT
# TF - Daci_0595: Bpro_4233
>Bpro_4234(PF01810) Score=17 Pos=-92 [Polaromonas sp. JS666]
TAAGTGTGCCG-(10)-CAATACAGTTT-(15)-CAACTGTATTG-(0)-GTAGTGTGCTG
# TF - YdcR: Bpro_3442
>Bpro_3448(COG2863) Score=7.3 Pos=-44 [Polaromonas sp. JS666]
ATCTGATGCTTACGC---------ATGTGAGGCATGATT
>Bpro_3448(COG2863) Score=9.2 Pos=-68 [Polaromonas sp. JS666]
ATCTGATATGGTTTT---------ATCTGATGCTTACGC
# TF - Daci_3053: Bpro_2754
>Bpro_2753(sgaA) Score=5.2 Pos=-122 [Polaromonas sp. JS666]
ATTCTGTATGCAAAAA
>Bpro_2753(sgaA) Score=5.8 Pos=-58 [Polaromonas sp. JS666]
ATTTTGTATGCAAAAA
>Bpro_2754(Daci_3053) Score=5.8 Pos=-86 [Polaromonas sp. JS666]
TTTTTGCATACAAAAT
>Bpro_2754(Daci_3053) Score=5.2 Pos=-22 [Polaromonas sp. JS666]
TTTTTGCATACAGAAT
>Bpro_0548(sgaA2) Score=5.1 Pos=-111 [Polaromonas sp. JS666]
ATTATGCATACAAAAG
>Bpro_0548(sgaA2) Score=4.4 Pos=-33 [Polaromonas sp. JS666]
AAATTGTATGCAATTT
# TF - GabR2: Bpro_2911
>Bpro_2912(gabT) Score=14.8 Pos=-122 [Polaromonas sp. JS666]
CCATGTACAGCA-(6)-ACCCGCACAGTG-(17)-AGCTGTACATGG
# TF - Aave_3430: Bpro_2661
>Bpro_2662 Score=18.3 Pos=-130 [Polaromonas sp. JS666]
ACAGCCACAGATGG-(11)-ACCATAACAGATGG-(8)-CCATCTGTACCGAT-(11)-TTGATTGCCTCTGT
>Bpro_2661(Aave_3430) Score=15.4 Pos=-137 [Polaromonas sp. JS666]
ACAGAGGCAATCAA-(11)-ATCGGTACAGATGG-(8)-CCATCTGTTATGGT-(11)-CCATCTGTGGCTGT
# TF - UxuR2: Bpro_3963
>Bpro_3976 Score=4 Pos=-161 [Polaromonas sp. JS666]
TTGCTGGTTAGACCAAACT
>Bpro_3963(uxuR2) Score=5.5 Pos=30 [Polaromonas sp. JS666]
CAATTGGCCTTACCACTTG
>Bpro_3962(COG4948) Score=5.5 Pos=-131 [Polaromonas sp. JS666]
CAAGTGGTAAGGCCAATTG
>Bpro_3977(uxuR3) Score=4 Pos=-198 [Polaromonas sp. JS666]
AGTTTGGTCTAACCAGCAA
# TF - UxuR3: Bpro_3977
>Bpro_3976(COG0834) Score=5.1 Pos=-118 [Polaromonas sp. JS666]
TTAGTGGTTTACCACTAT
>Bpro_3976(COG0834) Score=5.1 Pos=-297 [Polaromonas sp. JS666]
AAGATGGTTTACCAATTA
>Bpro_3977(uxuR3) Score=5.1 Pos=-240 [Polaromonas sp. JS666]
ATAGTGGTAAACCACTAA
>Bpro_3977(uxuR3) Score=5.9 Pos=-217 [Polaromonas sp. JS666]
AAATTGGTATACCACTTA
>Bpro_3977(uxuR3) Score=5.1 Pos=-61 [Polaromonas sp. JS666]
TAATTGGTAAACCATCTT
>Bpro_3976(COG0834) Score=5.9 Pos=-141 [Polaromonas sp. JS666]
TAAGTGGTATACCAATTT
# TF - SdhR: Bpro_3599
>Bpro_3598(mdh) Score=7.5 Pos=-239 [Polaromonas sp. JS666]
TATCATATCTTATATAAGACATAAGA
>Bpro_2101(aceA) Score=7.1 Pos=-102 [Polaromonas sp. JS666]
ATTTTTGTCTTATATAAGACATAAGA
>Bpro_3599(sdhR) Score=7.5 Pos=-49 [Polaromonas sp. JS666]
TCTTATGTCTTATATAAGATATGATA
# TF - GudR: Bpro_3418, Bpro_4527
>Bpro_4527(gudR) Score=4.9 Pos=-24 [Polaromonas sp. JS666]
GCAAGTTAGCGTTAACATCA
>Bpro_3418(gudR) Score=5.2 Pos=-33 [Polaromonas sp. JS666]
GACTGGTAGCGCTATCGTCG
>Bpro_4526(tctC) Score=5.9 Pos=-79 [Polaromonas sp. JS666]
AATTGTTAGCGCTAACATTC
>Bpro_3419(kdgD) Score=6 Pos=-29 [Polaromonas sp. JS666]
AAAAGGTAGCGCTACCATTC
>Bpro_3419(kdgD) Score=5.5 Pos=-2 [Polaromonas sp. JS666]
CAATGGTAGCGCTACCTTTA
# TF - GguR: Bpro_3110
>Bpro_3110(gguR) Score=4.6 Pos=-59 [Polaromonas sp. JS666]
AGGTTGTCTGATGACTG
>Bpro_3109(udh) Score=4.6 Pos=-97 [Polaromonas sp. JS666]
CAGTCATCAGACAACCT
# TF - TalR: Bpro_0436
>Bpro_0435(talD) Score=7 Pos=-159 [Polaromonas sp. JS666]
AAATGATAACGTTATCATTT
>Bpro_0435(talD) Score=6.8 Pos=-281 [Polaromonas sp. JS666]
AAATGACAACGTTATCATTA
>Bpro_0436(talR) Score=6.8 Pos=-328 [Polaromonas sp. JS666]
TAATGATAACGTTGTCATTT