# RNA - TPP
>BT0653(thiS) Score=62.8 Pos=-158 [Bacteroides thetaiotaomicron VPI-5482]
CGTAAAGACAAAGGGGTGCCCCCAAAGAGGGGCTGAGATTATACCCTAGGAACCTGAGGCAGTTAGCACTGACGTAGGGATTGTGTTTCTTTCTTAT
>BT2390(omp_thi) Score=62.4 Pos=-96 [Bacteroides thetaiotaomicron VPI-5482]
TCACTAAGTAGGGGTGCCTTAACATGACGGGCTGAGAACATACCCATAGAATCTGAACCGGGTAATGCCGGCGTAGAGAACTAATTAATAAGCAAGAT
>BT2396(pnuT) Score=53 Pos=-97 [Bacteroides thetaiotaomicron VPI-5482]
TCACGCAATAGGGGTGCCCTAACATGACAGGCTGAGAACATACCCATAGAATCTGATCCGGGTAATGCCGGCGTAGAGAACGAATAAATAAGCAAAT
# RNA - Cobalamin
>BT1998(nrdD) Score=94.8 Pos=-214 [Bacteroides thetaiotaomicron VPI-5482]
TCTTTGTATCCGATTTCGGAACTAAAAAGAGGTTTAGTCAATGAGGGAACGCTGTGCAAATCGGCGACAGTACCCGCTGCTGTAATTCTCTGTGAATCCGCACACTATGTCACTGCATCGGCAGATGTGGGAAGGCGCTGCGGGGGAGGGATAAGTCAGAAGACCTGCCGGAGTCAAATAAACATATTA
>BT1915(pccC) Score=86.5 Pos=-341 [Bacteroides thetaiotaomicron VPI-5482]
TCTTTGCCCCCCGAAATGGTTCGGAGTCCGTGTCCAACGGACAACGATTAAAAGGGAATCGGGTGTAAATCCCGTACAGTCCCGCTGCTGTGAAGCTCTATACAATGTCTTATTAATGAACTAATTTATCGCCACTGATGTTATTTCGGGAAGGCACTATAAGACAAGAGTCAGTCAGAAGACCTGCCACTTCGCGTAAAGCGTTCTT
>BT1486 Score=102.6 Pos=-286 [Bacteroides thetaiotaomicron VPI-5482]
ATCTTTGTCCCCGCATTGGTTTGCGACTCTCATCACGAGGGAAGCGATTAAAAGGGAATCAGGTGTAAATCCTGAACAGTCCCGCTGCTGTAAGTTCCATAGATATGTTGCGAGCAATCTACTCAAAGCCACTGGAAAGAAAATTCCGGGAAGGCGCCCGCAACAGGAATAAGTCAGAAGACCTGCCATGTAAAATCCGTTTCACTG
>BT1489(btuB1) Score=104.2 Pos=-387 [Bacteroides thetaiotaomicron VPI-5482]
TATCTTTGTCGCGCATTGGTTTGCAACTCTCATGCACGAGGGAAGCAATTAAAAGGGAATCAGGTGAAAGTCCTGAACAGTCCCGCTGCTGTAAGTTCATTTTTTGGTTGCGAGCAATCGACTTTATAGCCACTGGAAAGCAAATTCCGGGAAGGCGTTCGCAACAGGAACAAGTCAGAAGACCTACCATGCAAACTCGTTTCACTGC
>BT2095 Score=97.5 Pos=-394 [Bacteroides thetaiotaomicron VPI-5482]
AGTATCTTTGCACCTGCAAGGTTCGTATTTGGAGTTGTCTAACCTTCCAAAACGATGAAAAGGGAATCCGGTGTAAATCCGGGACAGTACCTGCTGCTGTAAGTCCTCTCTTTCGGGAGATGAGTTTATCACATTCTTTGCCACTGGTGACATCACTGGGAAGGCGTGATAAATGGGGACGAGTCAGAAGACCTGCCTTGACGCTGCAGATTTAT
>BT1957 Score=110 Pos=-348 [Bacteroides thetaiotaomicron VPI-5482]
AATTTTGCAGTCGGGAAATGGTTTCGGGAGGTTTACGCCTTCCGAATGAAAAGGGAACCCGGTGAAAATCCGGGACAGTACCCGCTGCTGTGAGTCCACAAAAACGGACATCGAACTTTTGCCACTGGTGTAATACCGGGAAGGCACGATGACCGGGACGAGTCAGAAGACCTGCCATGACCGGAATGAGATTT
# TF - HTCS_Rgu-1: BT4111, BT4124
>BT4116(plyC1) Score=9.8 Pos=-119 [Bacteroides thetaiotaomicron VPI-5482]
CAAAAAATACAA---------CAAATATTGCAC
>BT4119(plyC2) Score=8.3 Pos=-221 [Bacteroides thetaiotaomicron VPI-5482]
AAAATAGTGCAC---------CAAAAAGTCCCC
>BT4114(susC_Rgu-1) Score=9.4 Pos=-127 [Bacteroides thetaiotaomicron VPI-5482]
CAAAAAATACTA---------CAAATATTACAC
>BT4108(rhiN) Score=9.1 Pos=-105 [Bacteroides thetaiotaomicron VPI-5482]
CAAAAAATACAC---------TAAAAAATCCCA
>BT4187(pehX1) Score=9 Pos=-265 [Bacteroides thetaiotaomicron VPI-5482]
CAAAAAATACAC---------CAATAACTCCAC
# TF - HTCS_Ara-1: BT0366
>BT0365(lamG) Score=7.6 Pos=-136 [Bacteroides thetaiotaomicron VPI-5482]
TATCCACCTCGAAAATTCATTTGTCCACCT
>BT0367(abn2) Score=7 Pos=-69 [Bacteroides thetaiotaomicron VPI-5482]
TGTCCACCAATCGTGTTCGTATGTCCACCT
# TF - HTCS_Fru: BT1754
>BT1763(susC_Fru-1) Score=8.1 Pos=-115 [Bacteroides thetaiotaomicron VPI-5482]
GCAACATAT------------GAAACATTT
>BT1759(scrB) Score=7.9 Pos=-111 [Bacteroides thetaiotaomicron VPI-5482]
GTAACATCT------------GAAACAAAA
>BT1765(scrL) Score=7.7 Pos=-116 [Bacteroides thetaiotaomicron VPI-5482]
GTATCAAAA------------GAAACAAAG
>BT3082(scrB2) Score=7.2 Pos=-98 [Bacteroides thetaiotaomicron VPI-5482]
GTAACGTTT------------GAATCATTT
# TF - SusR4: BT2160
>BT2159(BT2159) Score=5.5 Pos=-135 [Bacteroides thetaiotaomicron VPI-5482]
ATCTACATAAAGT
>BT2159(BT2159) Score=5.5 Pos=-202 [Bacteroides thetaiotaomicron VPI-5482]
ATCTACATTTTTT
# TF - HTCS_Man-2: BT3302
>BT3301(manF3) Score=8.9 Pos=-249 [Bacteroides thetaiotaomicron VPI-5482]
GTACGCTTTTACGACA-----ATATATTTTTGCGACA
# TF - HTCS_Man-1: BT2628
>BT2627(sbp_Man-3) Score=9.4 Pos=-254 [Bacteroides thetaiotaomicron VPI-5482]
GTGTATTATAGCGACA-----GTAAATATTTGTGCCA
>BT2629(manB) Score=9.3 Pos=-132 [Bacteroides thetaiotaomicron VPI-5482]
GTAAAGCTCCGTGCCA-----GTTAATTTCAGCGACA
# TF - HTCS_Aga-1: BT0267
>BT0262(BT0262) Score=9.3 Pos=-121 [Bacteroides thetaiotaomicron VPI-5482]
TTATTTATTACTG--------TGAATGATTATAG
>BT0266(BT0266) Score=10.4 Pos=-238 [Bacteroides thetaiotaomicron VPI-5482]
TGGTCTATTTTTA--------TGAATGATTTTTA
>BT0268(susC_Aga-1) Score=10.7 Pos=-127 [Bacteroides thetaiotaomicron VPI-5482]
TGGTCCAATTTTG--------TGAATGATTAGAG
# TF - HTCS_Ogl-2: BT4137
>BT4136(fucO ) Score=12.3 Pos=-292 [Bacteroides thetaiotaomicron VPI-5482]
ATTAGTGATTTTTGAAA----ATTAGTGATTTTTGAAA
>BT4135(susC_Ogl-3 ) Score=12.3 Pos=-120 [Bacteroides thetaiotaomicron VPI-5482]
ATTCATGCTTATTGAAA----AAGAATGAATTGTTAAC
# TF - HTCS_Pga: BT4673
>BT4672(ganC) Score=11.9 Pos=-99 [Bacteroides thetaiotaomicron VPI-5482]
TTCGTCCTATTTTT-------TATGTCCAATCTGT
# TF - SusR3: BT3309
>BT3310(susC3) Score=6.1 Pos=-127 [Bacteroides thetaiotaomicron VPI-5482]
ATCCACTTATTATACCCT
>BT3310(susC3) Score=6 Pos=-194 [Bacteroides thetaiotaomicron VPI-5482]
ATCCACTTTTTAGGCCTC
# TF - Zur: BT2511
>BT1139(omp_Zn) Score=5.9 Pos=-77 [Bacteroides thetaiotaomicron VPI-5482]
ATGCAACTCAGTTGCAA
>BT2512(zntA) Score=5.8 Pos=-56 [Bacteroides thetaiotaomicron VPI-5482]
TTGCAACTTTGTTGCAC
>BT2038(czcB) Score=5.7 Pos=-78 [Bacteroides thetaiotaomicron VPI-5482]
ATGCAAGCAAGTTGCAT
# TF - UxaR: BT0824
>BT0824(uxaR) Score=6.1 Pos=-92 [Bacteroides thetaiotaomicron VPI-5482]
AAAATAATTCGTATATTTGC
>BT_0823(uxaC) Score=6.1 Pos=-166 [Bacteroides thetaiotaomicron VPI-5482]
GCAAATATACGAATTATTTT
# TF - KdgR: BT0487
>BT3231(kduI1) Score=4.8 Pos=-66 [Bacteroides thetaiotaomicron VPI-5482]
ATCGTGTACGTAAACGAT
>BT4107(sgcC) Score=4.5 Pos=-194 [Bacteroides thetaiotaomicron VPI-5482]
TTCGTGCACGGAAACGAC
>BT4107(sgcC) Score=4.2 Pos=-172 [Bacteroides thetaiotaomicron VPI-5482]
TTTGTGCACGTAAACGTC
>BT0488(kdgK) Score=5.6 Pos=-228 [Bacteroides thetaiotaomicron VPI-5482]
TATGTGCTCGCACACAAT
>BT0488(kdgK) Score=5.9 Pos=-146 [Bacteroides thetaiotaomicron VPI-5482]
TTTGTGCCCGCACACGAA
>BT0487(kdgR) Score=5.9 Pos=-124 [Bacteroides thetaiotaomicron VPI-5482]
TTCGTGTGCGGGCACAAA
>BT0487(kdgR) Score=5.6 Pos=-42 [Bacteroides thetaiotaomicron VPI-5482]
ATTGTGTGCGAGCACATA
# TF - UxuR: BT1434
>BT1434(uxuR) Score=5.5 Pos=-124 [Bacteroides thetaiotaomicron VPI-5482]
CGTGTGTGCGCACACACT
# TF - LgoR: BT3613
>BT3614(lgoD) Score=6.5 Pos=-101 [Bacteroides thetaiotaomicron VPI-5482]
TACGTAAACCGTTACGTA
>BT4159(GH43) Score=6 Pos=-157 [Bacteroides thetaiotaomicron VPI-5482]
TACGTAAAGCATTACGTG
>BT3613(lgoR) Score=6.5 Pos=-96 [Bacteroides thetaiotaomicron VPI-5482]
TACGTAACGGTTTACGTA
# TF - FucR: BT1272
>BT1272(fucR) Score=6.4 Pos=-45 [Bacteroides thetaiotaomicron VPI-5482]
CTTTGCAACAGCATAGCTCAGCACAG
# TF - XylR: BT0791
>BT0791(xylR) Score=5.1 Pos=-150 [Bacteroides thetaiotaomicron VPI-5482]
CATATTGTAATTCAGAAGATAAC
>BT0791(xylR) Score=5.9 Pos=-280 [Bacteroides thetaiotaomicron VPI-5482]
GATATCGTTTGAAATACAATAAG
>BT0791(xylR) Score=5.7 Pos=-196 [Bacteroides thetaiotaomicron VPI-5482]
CTTTTTGTACTTTATACAATTAC
>BT0791(xylR) Score=5.4 Pos=-117 [Bacteroides thetaiotaomicron VPI-5482]
CATATTGTAGATTGTATGATATG
>BT0347(tkt) Score=5.3 Pos=-162 [Bacteroides thetaiotaomicron VPI-5482]
CTTACTGTATTGTAAACAAGAAG
# TF - AraR: BT0354
>BT0365(PF13385) Score=5.7 Pos=-167 [Bacteroides thetaiotaomicron VPI-5482]
AAAGTGTAAAAAAGACACTTA
>BT4163(BT4163) Score=5.1 Pos=-329 [Bacteroides thetaiotaomicron VPI-5482]
AAATTGTATTATCTACACTCT
>BT3047(sbp_Ara-4) Score=4.9 Pos=-229 [Bacteroides thetaiotaomicron VPI-5482]
ATAATGTAAAATCTACACTCA
>BT0356(araM) Score=5.6 Pos=-84 [Bacteroides thetaiotaomicron VPI-5482]
AGAGTGTATTTGATACACCAA
>BT0356(araM) Score=5.8 Pos=-60 [Bacteroides thetaiotaomicron VPI-5482]
AAAGTGTTACTTTTACACCCA
# TF - Crp: BT4338
>BT0832(serB) Score=6.3 Pos=-67 [Bacteroides thetaiotaomicron VPI-5482]
TTTTATGTTATTTAGCATAAAA
>BT0356(araM) Score=6.2 Pos=-105 [Bacteroides thetaiotaomicron VPI-5482]
TTTTATGTTGCACAACATATAA
>BT2831(PF01694) Score=4.9 Pos=-192 [Bacteroides thetaiotaomicron VPI-5482]
ATATATGTTACACAAAAGATTT
>BT2831(PF01694) Score=5 Pos=-69 [Bacteroides thetaiotaomicron VPI-5482]
TTCCATGCTTTAAAACAGAATT
>BT2178 Score=5.4 Pos=-135 [Bacteroides thetaiotaomicron VPI-5482]
TTTTATGCTATAAAACATATCG
>BT4738(pflB) Score=6.1 Pos=-114 [Bacteroides thetaiotaomicron VPI-5482]
TTTTATGTTGAAAAGCATAAAA
>BT1272(fucR) Score=5.5 Pos=-100 [Bacteroides thetaiotaomicron VPI-5482]
TTTCCTGCTATAGAACATATTA
>BT2096(BT1272) Score=4.8 Pos=-77 [Bacteroides thetaiotaomicron VPI-5482]
CTGTATGTTGTAAAACACATAC
>BT1434(uxuR) Score=5.1 Pos=-207 [Bacteroides thetaiotaomicron VPI-5482]
TCTTATGTTTAACAACATACGT
>BT4338(crp) Score=4.8 Pos=-33 [Bacteroides thetaiotaomicron VPI-5482]
TTTTGTGCTGTATAACACAGTT
>BT0791(xylR) Score=4.2 Pos=-81 [Bacteroides thetaiotaomicron VPI-5482]
AACAATGTTTTATAGCATGTCA
>BT2097(COG3533) Score=4.8 Pos=-111 [Bacteroides thetaiotaomicron VPI-5482]
GTATGTGTTTTACAACATACAG
>BT4080(sbp_Crp-1) Score=5.7 Pos=-168 [Bacteroides thetaiotaomicron VPI-5482]
TTATATGTTATAGAATATAAAA
>BT4330(nupG) Score=5.7 Pos=-271 [Bacteroides thetaiotaomicron VPI-5482]
CATTATGTTCTATAACATAAAA
# TF - ArgR: BT3762
>BT3762(argR) Score=6 Pos=-16 [Bacteroides thetaiotaomicron VPI-5482]
TTAGAATAATTATACAAT
# TF - NanR: BT0433
>BT0434(BT0434) Score=6.3 Pos=-98 [Bacteroides thetaiotaomicron VPI-5482]
TTATTAATAAAATATTTTATTAT
>BT0434(BT0434) Score=5.9 Pos=-95 [Bacteroides thetaiotaomicron VPI-5482]
TTAATAAAATATTTTATTATCTA
>BT2055(exbB) Score=4.8 Pos=-39 [Bacteroides thetaiotaomicron VPI-5482]
ATAATAATCAATTAATTAATCTT
>BT0433(nanR) Score=5.8 Pos=-51 [Bacteroides thetaiotaomicron VPI-5482]
TTAATAAAAAAATTAATTATCTT
# TF - ManR: BT2103
>BT2107(susC_Man-1) Score=5.9 Pos=-148 [Bacteroides thetaiotaomicron VPI-5482]
CAATATGTATATACATATAG
>BT2103(manR) Score=5.8 Pos=-108 [Bacteroides thetaiotaomicron VPI-5482]
TAGTATGTCTGAACATATAA
>BT2104(pmi-manK) Score=5.8 Pos=-41 [Bacteroides thetaiotaomicron VPI-5482]
TTATATGTTCAGACATACTA
# TF - HcpR: BT0688
>BT_0687(hcp) Score=5.9 Pos=-91 [Bacteroides thetaiotaomicron VPI-5482]
ATGTAACATTGGTTACAA
# TF - PerR: BT0215
>BT0215(perR) Score=6.3 Pos=-40 [Bacteroides thetaiotaomicron VPI-5482]
ATAATTGTAATGAATACAACTTT
>BT1604(PF05140) Score=6.1 Pos=-94 [Bacteroides thetaiotaomicron VPI-5482]
CTACTTGTAACGATTACAATTTT
>BT1211(BT1211) Score=6.2 Pos=-35 [Bacteroides thetaiotaomicron VPI-5482]
ATATTTGTACTCATTACAAATTC
# TF - Fur: BT1844
>BT1592(feoB) Score=6.6 Pos=-71 [Bacteroides thetaiotaomicron VPI-5482]
ATTTAAAAACATTCTAAAT
# TF - HTCS_Rgu-2: BT4182, BT4178
>BT2680(BT2680) Score=7.5 Pos=-111 [Bacteroides thetaiotaomicron VPI-5482]
GATTCATTTTTAAA------TGAACAAATCTCTA
>BT4174(rhiN2) Score=9.2 Pos=-117 [Bacteroides thetaiotaomicron VPI-5482]
TGGACAAATTTAAA------TGGACAATATTCCA
>BT4151(bguA) Score=8.5 Pos=-111 [Bacteroides thetaiotaomicron VPI-5482]
GATACAATATTCTA------TGTACATCTTTCTA
>BT4172(BT4172) Score=9.6 Pos=-123 [Bacteroides thetaiotaomicron VPI-5482]
TGAACAAATATCCA------TGAATGATATTCTA
>BT4175(BT4175) Score=6.5 Pos=-183 [Bacteroides thetaiotaomicron VPI-5482]
TGGAATATTGTCCA------TTTAAATTTGTCCA
>BT4182(HTCS_Rgu-2) Score=8 Pos=-253 [Bacteroides thetaiotaomicron VPI-5482]
TAAACAAATATTCT------GGAAGTTTTTTCCA
>BT4152(abnC) Score=8.2 Pos=-128 [Bacteroides thetaiotaomicron VPI-5482]
TGTACGAAACTACA------TGATAATATCTCCA
>BT4163(BT4163) Score=7.2 Pos=-263 [Bacteroides thetaiotaomicron VPI-5482]
GGCGGTATTTTCCA------TGTACGATTCTTCA
# TF - HTCS_Man-3: BT3786
>BT3787(sbp_Man-4) Score=8.4 Pos=-244 [Bacteroides thetaiotaomicron VPI-5482]
CTATTAAATCATGCCA-----GTAAATATCCCTGCCG
>BT3784(manB  ) Score=9.4 Pos=-131 [Bacteroides thetaiotaomicron VPI-5482]
GTAAGAATGCGTGCCA-----GTTAATTATAGCGCCA
>BT3779(BT3779) Score=9.1 Pos=-129 [Bacteroides thetaiotaomicron VPI-5482]
ACATATTTCACTGCCA-----GTAAACATTTGCGCCA
>BT3774(manG) Score=9.1 Pos=-134 [Bacteroides thetaiotaomicron VPI-5482]
ATGTAAAGTGGTGCCA-----GTAAATATCCGTGCCA
# TF - SusR: BT3705
>BT3704(susA) Score=5.3 Pos=-163 [Bacteroides thetaiotaomicron VPI-5482]
CACTTGTATTTTTC
>BT3704(susA) Score=5.4 Pos=-96 [Bacteroides thetaiotaomicron VPI-5482]
CATTTATATTTTCT
>BT3703(susB) Score=5.1 Pos=-184 [Bacteroides thetaiotaomicron VPI-5482]
AACTTATATTTATC
>BT3703(susB) Score=5.2 Pos=-117 [Bacteroides thetaiotaomicron VPI-5482]
AACTTGTATTTTTA
# TF - SusR2: BT3091
>BT3090(susC2) Score=6.1 Pos=-186 [Bacteroides thetaiotaomicron VPI-5482]
AAATCCACTACTTTTTTAGC
>BT3090(susC2) Score=5.9 Pos=-109 [Bacteroides thetaiotaomicron VPI-5482]
TAAACCACTATATTTTTGCT
# TF - NrfR: BT1413
>BT1418(nrfH) Score=6.6 Pos=-66 [Bacteroides thetaiotaomicron VPI-5482]
GGTGTAATAGTTATTACACC
# TF - RhaR: BT3768
>BT3763(rhaB) Score=8.1 Pos=-107 [Bacteroides thetaiotaomicron VPI-5482]
TCAAAAT--------------TCAAAAT
# TF - HTCS_Ara-2: BT3049
>BT3047(sbp_Ara-4) Score=9 Pos=-262 [Bacteroides thetaiotaomicron VPI-5482]
TGAATGATTC-----------TGAATGATTT
>BT3049(HTCS_Ara-2) Score=8.9 Pos=-81 [Bacteroides thetaiotaomicron VPI-5482]
TGAATCATTT-----------TACAAGATTT
>BT3043(abnX) Score=8 Pos=-105 [Bacteroides thetaiotaomicron VPI-5482]
TGCAAGATTT-----------TGGTCGTTTT
# TF - HTCS_Hep: BT4663
>BT4675(hepC) Score=8.3 Pos=-140 [Bacteroides thetaiotaomicron VPI-5482]
ACAAATGTGA-----------ACAAACGAAA
>BT4662(hepL1) Score=8.5 Pos=-149 [Bacteroides thetaiotaomicron VPI-5482]
ACAAAAACAA-----------ACAAATTTGA
>BT4658(hepH) Score=8 Pos=-140 [Bacteroides thetaiotaomicron VPI-5482]
AGAATATTAA-----------ACAAATTCAA
# TF - HTCS_Hya: BT3334
>BT3333(hyaS) Score=8.3 Pos=-98 [Bacteroides thetaiotaomicron VPI-5482]
TGGACTATTTT----------TGTACATTCCT
>BT3332(susC_Hya-1) Score=8.7 Pos=-140 [Bacteroides thetaiotaomicron VPI-5482]
TGTATTATTTT----------TGAATAATTCT
# TF - HTCS_Ogl-1: BT2826
>BT2818(susC_Ogl-1) Score=10.8 Pos=-214 [Bacteroides thetaiotaomicron VPI-5482]
TTGTGCACCT-----------TATTGCACGT
# TF - GalR: BT2096
>BT2096(galR) Score=6 Pos=-93 [Bacteroides thetaiotaomicron VPI-5482]
ACTAGTACGAACTGGTC
>BT2097(COG3533) Score=5.5 Pos=-125 [Bacteroides thetaiotaomicron VPI-5482]
ACTGGTACGGAGTGGTA