# TF - Lp_3221: LSEI_2103
>LSEI_2102(agl4) Score=6.5 Pos=-58 [Lactobacillus casei ATCC 334]
ATATGGAATCGATACCACAT
>LSEI_2103(lp_3221) Score=6.3 Pos=-37 [Lactobacillus casei ATCC 334]
CTATGAAATCGATTCCATAC
# TF - CcpA: LSEI_0809
>LSEI_2040(glgB) Score=4.4 Pos=-208 [Lactobacillus casei ATCC 334]
CAGTAAGCGGTTACAA
>LSEI_0980(nplT) Score=4.4 Pos=-80 [Lactobacillus casei ATCC 334]
TTGATAACGGTAACAA
>LSEI_0949 Score=3.9 Pos=-102 [Lactobacillus casei ATCC 334]
TTGAGCGCGTTTTCAA
>LSEI_2729(sorD) Score=4.1 Pos=-304 [Lactobacillus casei ATCC 334]
ATGTAACGGCTTATAT
>LSEI_0306(rbsR) Score=4.5 Pos=-88 [Lactobacillus casei ATCC 334]
TTGACAGCGCTTCCAA
>LSEI_2817(pts20B) Score=4.3 Pos=-39 [Lactobacillus casei ATCC 334]
CAGAAAACGATTACAT
>LSEI_0634 Score=4.5 Pos=-140 [Lactobacillus casei ATCC 334]
ATGAAATCGGATACAT
>LSEI_2549(ldh) Score=4 Pos=-193 [Lactobacillus casei ATCC 334]
CTGGAAACGCTTACGT
>LSEI_2817(pts20B) Score=4.6 Pos=-89 [Lactobacillus casei ATCC 334]
TTGAAAACGCTTGTAA
>LSEI_2739(ulaG) Score=4.2 Pos=-69 [Lactobacillus casei ATCC 334]
TTGTAAGCGTATCCAG
>LSEI_1126(pgi) Score=4 Pos=-62 [Lactobacillus casei ATCC 334]
ATGAAACCACTCTCAT
>LSEI_0662(glpK) Score=4.7 Pos=-51 [Lactobacillus casei ATCC 334]
CTGGAAACGCTTTCAT
>LSEI_2598(lacX) Score=4.5 Pos=-36 [Lactobacillus casei ATCC 334]
TTGAATGCGTTTTCGT
>LSEI_0664(galK) Score=4.7 Pos=-65 [Lactobacillus casei ATCC 334]
ATAAAAACGGTTACAA
>LSEI_0809(ccpA) Score=4 Pos=-94 [Lactobacillus casei ATCC 334]
AGTAAAACGCTTGCAT
>LSEI_2888(mtlA) Score=4.5 Pos=-65 [Lactobacillus casei ATCC 334]
TTGTCAGCGATTACAT
>LSEI_2769(LBA0143) Score=4.8 Pos=-90 [Lactobacillus casei ATCC 334]
TTGAATGCGGTTACAA
>LSEI_0748(ndk) Score=4 Pos=-108 [Lactobacillus casei ATCC 334]
ATGAAAACGATGAAAA
>LSEI_0559(fmpA) Score=4.5 Pos=-200 [Lactobacillus casei ATCC 334]
TTGTAAGCGTTAACCT
>LSEI_2296(cad) Score=4.5 Pos=-115 [Lactobacillus casei ATCC 334]
GAGAAAGCGCTTATAA
>LSEI_0369(simA) Score=4.9 Pos=-105 [Lactobacillus casei ATCC 334]
TTGAAACCGCTTGCAT
>LSEI_2070(lulA) Score=4.5 Pos=-30 [Lactobacillus casei ATCC 334]
TTGGAATCGTTTTAAT
>LSEI_2070(lulA) Score=4.6 Pos=-79 [Lactobacillus casei ATCC 334]
TTATAAACGCTTTCAG
>LSEI_2278(gabD) Score=4.1 Pos=-18 [Lactobacillus casei ATCC 334]
AAGGGAGCGTTTTCAA
>LSEI_0229(gntP) Score=4.9 Pos=-43 [Lactobacillus casei ATCC 334]
TTGTAAGCGATTTCTT
>LSEI_2045(fbp) Score=4.1 Pos=-14 [Lactobacillus casei ATCC 334]
AAGGAAGCTGTTTCAT
>LSEI_2045(fbp) Score=4.3 Pos=-81 [Lactobacillus casei ATCC 334]
CTGAAACCGTATACAA
>LSEI_0808(pepQ) Score=4.2 Pos=-229 [Lactobacillus casei ATCC 334]
ATGCAAGCGTTTTACT
>LSEI_0982(mapA) Score=4.5 Pos=-127 [Lactobacillus casei ATCC 334]
ATGATAGCGGTAACAT
>LSEI_0715(yxjF) Score=4.7 Pos=-98 [Lactobacillus casei ATCC 334]
TTGAAAGCGCTATCGT
>LSEI_1473(lplA1) Score=4.1 Pos=-101 [Lactobacillus casei ATCC 334]
TCGAAATCGCTTTCTT
>LSEI_1305(pdhA) Score=4.1 Pos=-68 [Lactobacillus casei ATCC 334]
TTGTAAAGATTTTCAT
>LSEI_1305(pdhA) Score=4.2 Pos=-111 [Lactobacillus casei ATCC 334]
AATAAAACGCTTGCAA
>LSEI_0629(treR) Score=4.3 Pos=-27 [Lactobacillus casei ATCC 334]
GTGAAAGCGATTTCTG
>LSEI_0629(treR) Score=4.2 Pos=-90 [Lactobacillus casei ATCC 334]
TTAAAAGCGTTTAAAC
>LSEI_2040(glgB) Score=4.1 Pos=-230 [Lactobacillus casei ATCC 334]
TTGTAATCGCTGTTAA
>LSEI_1784(spxB) Score=4 Pos=-149 [Lactobacillus casei ATCC 334]
GTTTAAGCGTTTTATA
>LSEI_1784(spxB) Score=4.4 Pos=-92 [Lactobacillus casei ATCC 334]
ATGAAAGGGCTTGCAT
# RNA - THF
>LSEI_2252(folT) Score=69.6 Pos=-132 [Lactobacillus casei ATCC 334]
TCTAGGAGTAGGAACCTGCGCGTTAAGTGCTGCCGGAACGGAATGTGAACGGCAGACGAAGACAAGTGTCGCGGTGCAGGTGCCGCATTCGCCTGA
# RNA - L10_leader
>LSEI_2273(rplJ) Score=75.3 Pos=-156 [Lactobacillus casei ATCC 334]
TTTGTGATCATTCACTCTGCCTAAGACTCAGGGGGCGTAAGCCTTAATTATCCTGCCGAGGTGGTATCGGAAACACTAGATACCTCTATGTCTTGGTAGACATGGAGTTTTTTTATATTTAA
# RNA - TPP
>LSEI_1757(thiT) Score=61.4 Pos=-141 [Lactobacillus casei ATCC 334]
AACCTTCACAAAGGGGAGCCATTGGCTGAGAACGGGGAAACCCGGACCCTTCGAACCTGTTCGTTAATGCGAGCGTAGGGATTTGTGAATGGTCGGAAG
>LSEI_0294(ykoE) Score=68.2 Pos=-245 [Lactobacillus casei ATCC 334]
AGAAACATTTGGGGTGCTGTAAAGCTGAGATGATACCCATGGAACCTGATGCAGTTAGGACTGCCGCAGGGAAATGTCGAAGAAGTGAATC
# RNA - FMN
>LSEI_1373(ribU) Score=108.4 Pos=-214 [Lactobacillus casei ATCC 334]
TTCGTCTTCAGGGCAGGGTGCAATTCCCGACCGGCGGTATAGTCCGCGACCCGCTTATGCGGTGGAACCGGTGTGACTCCGGTACCGATAGTGATAGTCTAGATGGAAGAAGATGGGGCT
# RNA - PyrR
>LSEI_1457(pyrR) Score=56.8 Pos=-325 [Lactobacillus casei ATCC 334]
AAGCACCTTTAACTAAGTCCAGTGAGGCTTAGAAGGTCCATTCCGCTGCGGCGGATTATTCAGGCTACGGTCGCCTTCTATCCCAAATTGGATTGAAGGCGACTTTTT
# RNA - L13_leader
>LSEI_2463(rplM) Score=59.6 Pos=-77 [Lactobacillus casei ATCC 334]
TGGTATTGTTTGCCCCACGATAAGCCCCGGAAACTTAACGTGTTCAAACAAGCACAGA
# RNA - L19_leader
>LSEI_1597(rplS) Score=32.3 Pos=-54 [Lactobacillus casei ATCC 334]
AACGACATTCCGCTGGTCGGGATGATTATGAATGTCGG
# RNA - L20_leader
>LSEI_1699(infC) Score=52.5 Pos=-192 [Lactobacillus casei ATCC 334]
TGAGAAAAAGCAGAAGTTCCCGCTTCTCGCCTAAGTCCTTGGACCGCTAGGCTCATTAGTTCGGTATTTAATGAACAGCGGGGTCTTTGTGGCCACGCTGTTTTTGTTTTTT
# RNA - L21_leader
>LSEI_1646(rplU) Score=45.2 Pos=-101 [Lactobacillus casei ATCC 334]
CCCTCCTATGCAACCGCACAATGTTGGGTTTTTAAGCGTAAGCACCCAACTTGGCGAGTCTTCAGGGGAAA
# RNA - Lysine
>LSEI_2837(lysX) Score=74.5 Pos=-284 [Lactobacillus casei ATCC 334]
CAAGAAATAGAGGTTGCGGTGGGCAACGAAAACTGGGGAGTGCCGTATCATGTTGAACCAGTTGTAAGTGCCACCGCCGAAATGTTGCACGATATTCGGATCGTGCGCATTGGGCCATGGGTGCATAACCCATGGACTGTCGAAGCACTCGCTTCGGGGCGCTATGATTCTGGT
>LSEI_0098(lysA) Score=98.3 Pos=-278 [Lactobacillus casei ATCC 334]
ACAAACAGATAGAGGTTGCAACCAACATGAGTAGCTTGATCGAGCGGGATCCTTCGTGATGACATCAAGCCAAAGGGGCGGTGCCGAAATGGGGGCGCCGGGATCGGCAAACCTGTTGGGCCAGGATTGAATAAGTCCTGTACTGTCGCTTAGAAACCTAAGCGGGGCGCTATCATTCAA
# TF - Rex: LSEI_1250, LSEI_2245
>LSEI_0775(adhE) Score=4.7 Pos=-85 [Lactobacillus casei ATCC 334]
TTGTTTACAAAATCACAA
>LSEI_1250(rex2) Score=4.6 Pos=-39 [Lactobacillus casei ATCC 334]
ATGTGAAAAGAGTAACAA
>LSEI_0285(noxE) Score=5 Pos=-40 [Lactobacillus casei ATCC 334]
TTGTGAAAAGGTTATCAA
>LSEI_0285(noxE) Score=5 Pos=-109 [Lactobacillus casei ATCC 334]
TTAATAAATATTTCACAA
>LSEI_0775(adhE) Score=5 Pos=-106 [Lactobacillus casei ATCC 334]
TCGTGAAAAAATTCACCA
>LSEI_0775(adhE) Score=5.4 Pos=-49 [Lactobacillus casei ATCC 334]
TTGTGAAATGGTTAACAA
# RNA - preQ1-II
>LSEI_2056(queT) Score=56.6 Pos=-97 [Lactobacillus casei ATCC 334]
AACACCAAAACTGAAAACGGAAGGCAATCCTTCCACGACGATACTTACTTTCCTTTGATCGTCGTTACTACTGGCATAGCCACAAAGGAGAACAAACATG
# RNA - yybP-ykoY
>LSEI_1801(atcL) Score=56 Pos=-160 [Lactobacillus casei ATCC 334]
TTTAACCAACATAGGGGAGTAACTAGCAGAGTATTCTGCGACAACGTCACCAACAAGGCTATGTCTGGTGTTGTCTTAAATAGTGAGACTTATGGATCTACT
# RNA - T-box(Ala)
>LSEI_0784(alaS) Score=32.5 Pos=-377 [Lactobacillus casei ATCC 334]
GAAAAGCTATAATGAGTTTTCGTTAGGACATGCGTTGAACCCTGCACGAGACAGAAACGACCGCACAGCTGAGAACGGTCGCGTCAGGCTAAGATGTGCTCCCTGATATTAGTTAAACGACAATTAATGAAGTGGTAATGACTCGCATCATTGCAACCAAGGTGGTACCGCGTGCAAGCGCCCTTGGCAG
# RNA - T-box(Asp)
>LSEI_1527(hisS) Score=50.9 Pos=-361 [Lactobacillus casei ATCC 334]
ACTAAGACCTGTGACGAAGTAGGATAGATCACTTTAAGCGACCCGGAGATGGTGAAAGCCGGGAACGATCGAAAAGACACTTCTGAGGTGAACAAGTTCCGGAACGCCACCGTTATGGCAAAGAAAAAAACAAGGTGGTACCGTGTCCGCACCCTTCGA
# RNA - T-box(Arg)
>LSEI_1728(argS) Score=44 Pos=-218 [Lactobacillus casei ATCC 334]
ATAAGGTTCTGTGAGAAAGAGGAAATAAGGTCAGTTGGCGGTTCTTAGTGAGATCGGATAGTGCAAACGATCACGTCGGACCTGATGGCGCGCTTTTGAGAATCAGTGCTTTGAGTGGACATATTGTCAAGCAGAGTGGTACCGCGGGCTAGGGCTCGTCTCTTCG
# TF - MntR: LSEI_0777
>LSEI_2423(mntC) Score=5.7 Pos=-32 [Lactobacillus casei ATCC 334]
GAATTAGGTCACCCTAAAAA
>LSEI_2413(mntH) Score=6.4 Pos=-71 [Lactobacillus casei ATCC 334]
AAGTTAGGGAGACCTAAAAG
# RNA - T-box(Gly)
>LSEI_1504(glyQ) Score=50.9 Pos=-241 [Lactobacillus casei ATCC 334]
TGAATCGGTGATGAGAAAAAGGGTCGCAACGAAACCTATTGAAGCGAGTCGGGGAAAGTGTAAGCCTGATAACGGTTGTTGTGATTGGCGTTTTCGAACCAAATGATGAAGCCGCAGGTAGTTTTTTCTATCTGAAGTAGGGTGGAACCGCGCATAAGCGTCCCTACG
# RNA - T-box(His)
>LSEI_1435(hisZ) Score=113.8 Pos=-382 [Lactobacillus casei ATCC 334]
ACATGAAGTTGTGATTAGAACAAGTAAGCTGATCCTGATCAACAGAGAGCGTCTATTGCTGAAAAGACGCGATTAGCCAGCTGAACACACATCTATGAACTTGACGGCTGAACTAAGTAAGCTGTCACGCATCCGTTGCGTTATCACTGCTGCCAACTGCTGTTCGCAATTGCTGACAGTTACTTGGCAGGTGAGGTTTAGGTCGCAAGAGCTAAACAAAATTGAGGTGGTACCGCGGTCAAAAATCGCCCTCGGA
# RNA - T-box(Ile)
>LSEI_1280(ileS) Score=81.7 Pos=-252 [Lactobacillus casei ATCC 334]
CAATAACGTATGAACACGCGTCGTTTGGTGGTTCCCTTTGCAGCGAGTCAGGAAGTAGGTGTGAGCCTGACAAGTACCGCTGAACGATATCAGTTCACAGTTGTCCTGCCGAAGTTGGTAAGCGGGACCGGTTGATCACCGTTAGTCAATCACTGAGGGGGACTTGTTCCCTGAAGTTAGGTGGTACCACGTTTGCTCGTCCTAATATT
# TF - PurR: LSEI_2587
>LSEI_0217(guaB) Score=5.3 Pos=-194 [Lactobacillus casei ATCC 334]
AAAACCGAACATT
>LSEI_0217(guaB) Score=4.5 Pos=-235 [Lactobacillus casei ATCC 334]
AAAAACGAATGAT
>LSEI_0151(pbuO) Score=5.6 Pos=-107 [Lactobacillus casei ATCC 334]
AAACACGAACATT
>LSEI_2587(purR) Score=4.8 Pos=-126 [Lactobacillus casei ATCC 334]
AAATGCGAACGTT
>LSEI_1756(purE) Score=5.3 Pos=-107 [Lactobacillus casei ATCC 334]
AAACACGAACGAT
>LSEI_0911(guaC) Score=5.6 Pos=-135 [Lactobacillus casei ATCC 334]
AAACACGAACATT
# RNA - T-box(Leu)
>LSEI_0883(leuS) Score=81.7 Pos=-238 [Lactobacillus casei ATCC 334]
AACGAACAAAGGAGTAGTAAGTTAGCGCGGGTGACAGAGAGCAGGCGGTGGTGCGAGTCTGACGAAGCAAAGACCGAACTGACCTTTGAAGTTGCTGGGGTGAAATCAGTAGCCACAGCCGGCCGGACCGTTATCTCCTTTGAGCGCTGTGAAAGCAGAACTTAGGTGGTACCGCGGCTGAGCCGTCCTAATGTA
# RNA - T-box(Met)
>LSEI_0411(metQ) Score=74.3 Pos=-351 [Lactobacillus casei ATCC 334]
ACAACACTTTGAGAAGAAGAGTAACCTTGGCGCAGACGCTGTAGAAAGCCCGGTTGATGGAAAAGGGTCATCTGCAAGAAGGTGAAGATGAGCTTCGAATAGTTATTCGTGCGGTTAACGCTCACGAGTCGGTTACGGCCGTTATGCTGTCAGGTATCAACAGGTACTGGAGACGATGTATCAACATCGTGAATAAGGGTGGTAACGCGACACTGTCGCCCCTTGACT
>LSEI_0625(metE) Score=79.2 Pos=-423 [Lactobacillus casei ATCC 334]
TTGAAATGCGGAAAGATGAGTAGTTGTTAGTTTCTTGCTTAGAGAGTGTCCATTTGGTGAAAGGACATCAAGAAACGGCAGCGAATATGGTCTTGGTGATGCAGGAACGCTGAGCGATTGCGAGGCGGTCATGGGGACGCCCATTATTGCGTTAGGTCTCACAGCTATTTGCTGTCGGACTGATTGAGGAAAGTCGTGTGAACGGCTTTCAAACCAAGGTGGTACCACGGTAAGCCGTCCTTGGC
>LSEI_1177(metQ) Score=76.3 Pos=-312 [Lactobacillus casei ATCC 334]
GAAACGAATGACGTGAGTGAGTAGATCTAATCAGACTGTACAGAAAACCTGGGTAGCTGAGAGCAGGGTAGTTAATTGGATCGAAGATGGCTCATTGATCGGCATCGCTGAGCAGTGGTTAAGCGATGATGGCTGGCGGCCTTTAATCCGCACACAGGTGATTGCCTGTTATTGAGGACGCGATGGCGTCGAATTAGAATGGTACCGCGAGCTAGGCTCGCTTCTAAAAC
>LSEI_0764(metE2) Score=66.8 Pos=-486 [Lactobacillus casei ATCC 334]
CAGATTGCTTTGCGGAGAAGAGTACCTGAAGCGCAGATCACAAGCGAGCCTGAACAGTGAAAGCAGGCGATCAGTTAATCAGGGAAGATGAGCTCCAAACAGCTTTTCAGCGGTTCACGCCACTGAAACGGGCGCACCCGTTACCATGCCGGGTATCAAAATTGGTACCGTTGAGGCATTGGCATCAAAACCAGTGCGAATAAGGGTGGTAACGCGCAAAGTCGCCCCTTGATC
# RNA - T-box(Phe)
>LSEI_1672(pheS) Score=69.3 Pos=-298 [Lactobacillus casei ATCC 334]
CGTAAAAACGATGACGAAAGCCCAAACAGGCTGACGAGATAGGGAATGACGTTCATACGACTGCAAGACGTCTATCGCCAAAGTGTTTGTCTTCACTTTCTGAGTTGACTTTTGAAGTGGCAACACTTAGAAAGCTCCGGCCTAGCCGTTACCTTGTTGAGTGCATGGTTATTTCGTGACCATGAACAAGGGTGGTACCGCGATGCTTCGTCCCTTTT
# RNA - T-box(Pro)
>LSEI_2358(proB) Score=40.2 Pos=-240 [Lactobacillus casei ATCC 334]
TACAATTCACTTCATCAAGTCATAGTAGCGCCTCACAGAGATCAGGACAATCGCTGAAAGTCCTGAAATGTGCGCGAATCCAAGCTTGTATGATGAGTCTCACAAAACTTAAATAACGATAAAAGCGCAAAGCATTGCTTTGAACGAGAATGGTACCGCCTTAACGGGTGTCTCGA
# RNA - T-box(Ser)
>LSEI_1836(serS) Score=65.2 Pos=-257 [Lactobacillus casei ATCC 334]
AGCAAACACGTCTGAAGCGTCTATTGGATGATCAAGAGAGACAGCGGTTGGTGAAAGCTGTCAGCCATCCATATTCCAGCGCCTTAGTGGGTAGTGATGAACTGCACGGCCACTGACCGTTATCAGTTATTGAGGGTGGCGCATAGGCGTCAAACTTGGGTGGCACCGCGGAATGGCCTTTCGTCCCAACG
# RNA - T-box(Thr)
>LSEI_1703(thrS) Score=59.7 Pos=-262 [Lactobacillus casei ATCC 334]
GAAGCTATCGAAGACGGAAGCAACAAAGGATCATCCAATAGAGAGCGAGACCATGGCTGAAAGTCTTGCAAGATCTGATCCGAACCACTTCTCGAGATTGCCGCAAGGCCCTGTTACGCAGGTTACGCGTCAATTAAGTGGCCAACAGCCGGTGCTGTTGGCAAACTGGGTGGAACCGCGATCACTGATCGTCCCTGAT
# RNA - T-box(Trp)
>LSEI_2624(trpS) Score=72.8 Pos=-350 [Lactobacillus casei ATCC 334]
TATTCACACAAACGATGAGTAGCTTATCTAAGTGGTCTCCAGAGAGTCGGCAATGCTGTGACGTCGATGACCATGGTAGGCAAAGTTGGGTCGTTTGCGTTATGTTCGGTGGGTGCGCCTTAAGCCAAGAGAGGTCCGCAAGGCGGACAAGTTAGGTGGTACCGCGCGCTTGCGTCCTATGT
>LSEI_0078(trpD) Score=97.1 Pos=-468 [Lactobacillus casei ATCC 334]
GAACAAACCGATGATGTGGAGATCAAGATCATTGTGCGCGCAAAGAGAGTTGCCGGTGCTGAGAGTGCAATCGAACGCAGATGATTAAATGGACCACGGAGGGTTCTCCCGAAAGACTTCAAGTACGGAGAAACGTAAAGGCATACGTCAGTTGCCGGAGAGATGTTGGTCTCTCGCTAAGCGTGATTAATTGGGGATTTTTAGACAAATCAGATGCTATTATTTGTTGAAGTCTCGATTAATCGAACTAAGGTGGCACCGCGGAAAAATCCGTCCTTAAC
>LSEI_2797(oppA) Score=89.9 Pos=-416 [Lactobacillus casei ATCC 334]
ATGCAAACCTTTGAAGTGGAGATCAAGCTGATTGTGCACGCACAGAGAGCCGGCGATGCTGCGAGTCCGGCCGAACGCAGGTCAGTAAATGGACCACTGAGGGTTCCCCCGAAAGTTTTTCGAGTACGGGGAAACGTGTTGACATACGTCAGTTGTCGCCGGGGTGTTGGCCCCGGGCTAAGCGTGATCAAACACTGCCAGATGCTACCATCACACAGGCGCAGTCTCTTTGATCAAACTAAGGTGGCACCGCGGGAAACCGTCCTTAAC
# RNA - T-box(Tyr)
>LSEI_2031(tyrS) Score=76.7 Pos=-432 [Lactobacillus casei ATCC 334]
CATAAAGTCACCAGATGAGCCGCAGTAGTGGTCCTAGGCAGGTCTAAGAAAAACGGTGGTTGCTGCAAACCGTTCCGCCTTTGATTACGAATTACACCTCAATGAAAGCCTGGTTAACGGGTCATGCCGATATCCATTAGAGTGATGCAAAGCATAATGTGGGTGGTACCGCGGTGAAAATCGTCCCTGGT
# RNA - T-box(Val)
>LSEI_1251(valS) Score=114.9 Pos=-291 [Lactobacillus casei ATCC 334]
CTAATGCAATGATCAAGAGGGTCATGGTCTTTTTTTCCAGCGACAAGGTGGTTGGTGCAAACCTTGAAAAAGGCTATGGTTGTAGCTTGTGAGCTGCCGTCCTGAAGTGAGTAGGGAGCGGCCGGTGACAGCCGTTATCCTGAACCAAGTGGGGGATTGTTTCCCAATTTAGGTGGTACCGCGAGCTGACTCGTCCTAATTTT
>LSEI_0248(brnQ) Score=86.3 Pos=-356 [Lactobacillus casei ATCC 334]
ACTAAAAACGATGAGTAGAAGAGTACCTGAGTTGTCGGTGTCAGCGAGTCTCGGTTGGTGGGAAGAGACCTCTGGTAGCTTTGGGAAAGTAGTCTACGAGTTGCCGAGGTGACTTTGGAAGCTTCGGTTGGGATTGCGCCCATTATAGCAATCGTGTATCGCCAGGCAACTGGCCGTACACAGTAAGGCCGCTTACGGTGACGTAGCGGTAAATTAAGGTGGTACAGCGTGATTCGCGCCCTTAAC
# TF - NiaR: LSEI_0807
>LSEI_2277(niaP) Score=5 Pos=-45 [Lactobacillus casei ATCC 334]
CTAGGGTGTCAAGACACCCTAA
# TF - GlnR: LSEI_1653
>LSEI_2849(glnP) Score=5.3 Pos=-172 [Lactobacillus casei ATCC 334]
ATGTCAATTAATCTAACAT
>LSEI_0653(nrgA) Score=4.7 Pos=-173 [Lactobacillus casei ATCC 334]
ATGTCACATAAGCTAACGC
>LSEI_2863(ansB) Score=4.9 Pos=-90 [Lactobacillus casei ATCC 334]
TTGTCAGACTACCTAACAA
>LSEI_1653(glnR) Score=6 Pos=-79 [Lactobacillus casei ATCC 334]
ATGTCAGAAAAGCTTACAT
# TF - CopR: LSEI_1745, LSEI_A02
>LSEI_A02(copR) Score=4.6 Pos=-46 [Lactobacillus casei ATCC 334]
GAGACTACAAACGTAAACTT
>LSEI_1745(copR) Score=6.1 Pos=-29 [Lactobacillus casei ATCC 334]
TAGATTACAGATGTAAACGG
>LSEI_1745(copR) Score=5 Pos=-59 [Lactobacillus casei ATCC 334]
TGGTTTACAGTTGTAAATTA
>LSEI_A02(copR) Score=5.4 Pos=-77 [Lactobacillus casei ATCC 334]
GTGACTACAGTTGTAAACTA
# TF - FabT: LSEI_2120
>LSEI_2120(fabT) Score=6 Pos=-39 [Lactobacillus casei ATCC 334]
ACTTTGAATATCAAATC
# TF - CggR: LSEI_0966
>LSEI_0966(cggR) Score=7.6 Pos=1 [Lactobacillus casei ATCC 334]
TGCATACTGAACTTGCGTGGCTCAAAGCGATCGCGCC
# TF - CcpN: LSEI_2335
>LSEI_2334(ppdK) Score=4.7 Pos=-196 [Lactobacillus casei ATCC 334]
TTTTTAAATATCTCATTGAAA
>LSEI_2334(ppdK) Score=5 Pos=-66 [Lactobacillus casei ATCC 334]
TTCAAAAATAATACATTATAA
# TF - NrtR: LSEI_2768
>LSEI_2767(pncA) Score=6.3 Pos=-40 [Lactobacillus casei ATCC 334]
TTTAAGTAAAAAATACTTTTA
# TF - PerR: LSEI_0869
>LSEI_2506(ahpC) Score=5.5 Pos=-31 [Lactobacillus casei ATCC 334]
TAATAATCATTCTAA
>LSEI_0397(npr) Score=4.7 Pos=-74 [Lactobacillus casei ATCC 334]
TTGGAACTATTCTAA
>LSEI_2799(cadA) Score=5.2 Pos=-46 [Lactobacillus casei ATCC 334]
TTGTAATGGTTATAA
>LSEI_2799(cadA) Score=5 Pos=-80 [Lactobacillus casei ATCC 334]
TTATATTCGTTCTAA
>LSEI_2417(cueO) Score=5.3 Pos=-192 [Lactobacillus casei ATCC 334]
TTAGATTAATTCTAA
>LSEI_2588(ybbL) Score=5.8 Pos=-40 [Lactobacillus casei ATCC 334]
TTAGAATGATTATAA
# TF - TreR: LSEI_0629
>LSEI_0629(treR) Score=5.2 Pos=-61 [Lactobacillus casei ATCC 334]
ATACCTGTACGTACAGGTAA
# TF - RbsR: LSEI_0306
>LSEI_0306(rbsR) Score=6.7 Pos=-45 [Lactobacillus casei ATCC 334]
TAAGTAAAACGTTTTACCTA
# TF - ArgR: LSEI_1727, LSEI_1634
>LSEI_1344(artPQ) Score=4.2 Pos=-56 [Lactobacillus casei ATCC 334]
ATTGCATAAAAATCAATT
>LSEI_2810(artP2) Score=4.4 Pos=-46 [Lactobacillus casei ATCC 334]
AATGAGTATATATTCAAT
# TF - FatR: LSEI_0061
>LSEI_0061(fatR) Score=6.4 Pos=-29 [Lactobacillus casei ATCC 334]
GAATGAACGTTCATTC
# TF - GalR: LSEI_0667
>LSEI_0664(galK) Score=5.8 Pos=-79 [Lactobacillus casei ATCC 334]
TTATTTTTAGTAAAATAAA
# TF - HrcA: LSEI_1567
>LSEI_2239(groS) Score=6.7 Pos=-56 [Lactobacillus casei ATCC 334]
TTAGCACTTAGACATAACGAGTGCTAA
>LSEI_1762(clpL) Score=5.9 Pos=-257 [Lactobacillus casei ATCC 334]
TTAGCACTCTTAGTGGCAGAGTGCTTG
>LSEI_0963(clpP) Score=6.9 Pos=-51 [Lactobacillus casei ATCC 334]
TTAGCACTGTACTTTTAAGAGTGCTAA
>LSEI_1567(hrcA) Score=7.6 Pos=-42 [Lactobacillus casei ATCC 334]
TTAGCACTCATATAAAACGAGTGCTAA
>LSEI_2800(hsp) Score=6.7 Pos=-97 [Lactobacillus casei ATCC 334]
TTAGCACTCGACGTTTGCGAGTGCTAA
# TF - Zur: LSEI_2025
>LSEI_2427(znuA) Score=7 Pos=-183 [Lactobacillus casei ATCC 334]
TAATTCGTAATCATTACTATTTA
>LSEI_2426(lp_0947) Score=6.4 Pos=-183 [Lactobacillus casei ATCC 334]
CAAAACGTAATAATTACGATTTA
>LSEI_2426(lp_0947) Score=6.9 Pos=-40 [Lactobacillus casei ATCC 334]
TAAATAGTAATGATTACGAATTA
>LSEI_2425(rpsN2) Score=6.9 Pos=-248 [Lactobacillus casei ATCC 334]
TAAATAGTAATGATTACGAATTA
>LSEI_2427(znuA) Score=6.7 Pos=-40 [Lactobacillus casei ATCC 334]
TAAATCGTAATTATTACGTTTTG
>LSEI_2025(zur) Score=6.5 Pos=-69 [Lactobacillus casei ATCC 334]
TTAATCGTAATCAATACGATTTA
>LSEI_0242(znuC) Score=6.4 Pos=-39 [Lactobacillus casei ATCC 334]
TAAACCGTAATCGTTACCGTTTA
# TF - NrdR: LSEI_1706
>LSEI_1742(nrdG) Score=4.3 Pos=-113 [Lactobacillus casei ATCC 334]
ATACTACATCTTGGGG
>LSEI_0131(nrdD) Score=5.5 Pos=-131 [Lactobacillus casei ATCC 334]
ACACTATATAGTGTAT
>LSEI_1204(pnuN) Score=3.6 Pos=-105 [Lactobacillus casei ATCC 334]
CCAATATATTGTATAT
>LSEI_1204(pnuN) Score=4.9 Pos=-107 [Lactobacillus casei ATCC 334]
CACCAATATATTGTAT
>LSEI_0131(nrdD) Score=5 Pos=-133 [Lactobacillus casei ATCC 334]
ACACACTATATAGTGT
>LSEI_1467(nrdH) Score=4.6 Pos=-85 [Lactobacillus casei ATCC 334]
CCCCAAGATATGGTAT
>LSEI_2287(nrdJ) Score=5.3 Pos=-31 [Lactobacillus casei ATCC 334]
ATACCATATCTTGTAT
# TF - CcpB: LSEI_2269
>LSEI_2268(ywbB) Score=6 Pos=-259 [Lactobacillus casei ATCC 334]
CTGAAACGCGTTACAG
# TF - OglR2: LSEI_0400
>LSEI_0400(oglR2) Score=6.1 Pos=-89 [Lactobacillus casei ATCC 334]
TTGAAATCGATACCAA
# TF - MdxR: LSEI_0979
>LSEI_0982(malK) Score=5.8 Pos=-129 [Lactobacillus casei ATCC 334]
TTATGATAGCGGTAACATTC
>LSEI_0980(malL) Score=5.4 Pos=-82 [Lactobacillus casei ATCC 334]
TTTTGATAACGGTAACAAAC
# TF - LSEI_0368 : LSEI_0368
>LSEI_0368 (LSEI_0368) Score=6.5 Pos=-71 [Lactobacillus casei ATCC 334]
TTGTGTAAACGTTTTCGCAT
>LSEI_0368 (LSEI_0368) Score=6.7 Pos=-169 [Lactobacillus casei ATCC 334]
TTGCGGTAACGTTTACGCAA
>LSEI_0367(tal) Score=6.7 Pos=-44 [Lactobacillus casei ATCC 334]
TTGCGTAAACGTTACCGCAA
>LSEI_0367(tal) Score=6.5 Pos=-142 [Lactobacillus casei ATCC 334]
ATGCGAAAACGTTTACACAA
# TF - GutR: LSEI_2725
>LSEI_2729(gutF) Score=7.5 Pos=-88 [Lactobacillus casei ATCC 334]
TTTTCG--------GGAAAA
# TF - MtlR: LSEI_2887
>LSEI_2888(mtlA) Score=7.5 Pos=-96 [Lactobacillus casei ATCC 334]
TTTGGCACAGACAACTGTGCCAAA
# TF - TagR: LSEI_2656
>LSEI_2656(tagR) Score=4.8 Pos=-27 [Lactobacillus casei ATCC 334]
GAAAATGCTTTTCA
>LSEI_2655(tagK) Score=4.8 Pos=-112 [Lactobacillus casei ATCC 334]
TGAAAAGCATTTTC
# TF - FruR: LSEI_1349
>LSEI_1349(fruR) Score=5.1 Pos=-82 [Lactobacillus casei ATCC 334]
TGACAGTTGTTGAATGTTTT
>LSEI_1349(fruR) Score=5.9 Pos=-72 [Lactobacillus casei ATCC 334]
TGAATGTTTTTGCACGTTTT
# TF - CtsR: LSEI_2518
>LSEI_0963(clpP) Score=7 Pos=-85 [Lactobacillus casei ATCC 334]
AAATCTTTGACCTTATTTGACTTT
>LSEI_1762(clpE) Score=0.1 Pos=-198 [Lactobacillus casei ATCC 334]
TAGGTCAAGAAAGGTCAAACCTTT
>LSEI_2518(ctsR) Score=-0 Pos=-39 [Lactobacillus casei ATCC 334]
ATAGTCAAGATTGGTCAAAGTCAA
# TF - LexA: LSEI_0730, LSEI_1968
>LSEI_1346(uvrC) Score=4.9 Pos=-29 [Lactobacillus casei ATCC 334]
GCGAACATTTGTTTTA
>LSEI_1631(LJ1544) Score=4.3 Pos=-53 [Lactobacillus casei ATCC 334]
TTGAACACTTGTTCGT
>LSEI_1631(LJ1544) Score=5 Pos=-26 [Lactobacillus casei ATCC 334]
ACAAACAAATGTTCGG
>LSEI_1415(xerC) Score=5 Pos=-26 [Lactobacillus casei ATCC 334]
GAAAACATACGTTCGA
>LSEI_1049(umuC) Score=5.2 Pos=-40 [Lactobacillus casei ATCC 334]
GCAAACGTATGTTCGT
>LSEI_0288(srmB) Score=4.5 Pos=-55 [Lactobacillus casei ATCC 334]
GAGAATGTATGTTCTA
>LSEI_2649(recA) Score=4.8 Pos=-221 [Lactobacillus casei ATCC 334]
ACAAACGCATGTTCGA
>LSEI_0730(lexA) Score=5 Pos=-61 [Lactobacillus casei ATCC 334]
GCAAACGTTCGTTCGC
>LSEI_1968(lexA) Score=4.1 Pos=-53 [Lactobacillus casei ATCC 334]
TCAAAAGTTTTTTTGT
>LSEI_0956(uvrB) Score=4.2 Pos=-127 [Lactobacillus casei ATCC 334]
ACGAAATTTTGTTTGG
>LSEI_0956(uvrB) Score=5 Pos=-206 [Lactobacillus casei ATCC 334]
GCGAAAGTATGTTCGC
# TF - LacR: LSEI_0681
>LSEI_0681(lacR) Score=9 Pos=-46 [Lactobacillus casei ATCC 334]
AAGAAACAA-ATCAAACAA
# TF - YtrA: LSEI_2244
>LSEI_2244(ytrA) Score=6.9 Pos=-46 [Lactobacillus casei ATCC 334]
GTGTACTACGTATAATAGTACAC
# TF - GntR1: LSEI_0226
>LSEI_0226(gntR1) Score=5.7 Pos=-208 [Lactobacillus casei ATCC 334]
TATGTAAATCGTTTACAAA
>LSEI_0226(gntR1) Score=4.7 Pos=-175 [Lactobacillus casei ATCC 334]
ACCGTAAATTATTTTCACG
>LSEI_0227(gntZ) Score=4.7 Pos=-146 [Lactobacillus casei ATCC 334]
CGTGAAAATAATTTACGGT
>LSEI_0227(gntZ) Score=5.7 Pos=-113 [Lactobacillus casei ATCC 334]
TTTGTAAACGATTTACATA
# TF - RpiR: LSEI_2316
>LSEI_2315(rpiA) Score=5.7 Pos=-44 [Lactobacillus casei ATCC 334]
TGAAATATAATTTCA
>LSEI_2316(rpiR) Score=5.7 Pos=-154 [Lactobacillus casei ATCC 334]
TGAAATTATATTTCA
# TF - MleR: LSEI_0739
>LSEI_0740(mleS) Score=5.7 Pos=-389 [Lactobacillus casei ATCC 334]
TATAAAAATATTTTATC
>LSEI_0739(mleR) Score=5.7 Pos=-76 [Lactobacillus casei ATCC 334]
GATAAAATATTTTTATA
# TF - FlpA: LSEI_0073
>LSEI_0070(cadA) Score=4.8 Pos=-68 [Lactobacillus casei ATCC 334]
AAGTTGATCACCGTCAAGGC
>LSEI_0071(copZ) Score=5.4 Pos=-76 [Lactobacillus casei ATCC 334]
AACTTGACGACGATCAAGGA
# TF - YxeR: LSEI_0394
>LSEI_0394(yxeR) Score=4.2 Pos=-77 [Lactobacillus casei ATCC 334]
ATGTTGACACGGTGTCACTTT
>LSEI_0394(yxeR) Score=4.7 Pos=-33 [Lactobacillus casei ATCC 334]
TTAGTGACACCGTGTCACCAC
# TF - LSEI_0081: LSEI_0081
>LSEI_0081(LSEI_0081) Score=5.4 Pos=-119 [Lactobacillus casei ATCC 334]
GACACATGTGTGAC
>LSEI_0080(LSEI_0080) Score=5.4 Pos=-53 [Lactobacillus casei ATCC 334]
GTCACACATGTGTC
# RNA - SMK_box_riboswitch
>LSEI_0877(metK) Score=65.4 Pos=-85 [Lactobacillus casei ATCC 334]
AGAGTTGCAAAACATTCCCGATGGGGTTCGTCAAAACTATGACGAACATGCCTTGTAACCTAAAATAATAAGGGGGAAACAAAACATGCA
# TF - YhcF: LSEI_1880
>LSEI_1880(yhcF) Score=6.9 Pos=-40 [Lactobacillus casei ATCC 334]
AGTGTATTAGTAATCTAATACACT
# TF - NagR: LSEI_1807
>LSEI_1808(nagA) Score=5.3 Pos=-73 [Lactobacillus casei ATCC 334]
ATCTTGGTCTATACCAGTTA
>LSEI_1019(glmS) Score=5.3 Pos=-159 [Lactobacillus casei ATCC 334]
AAATTAATATAGACCAATAT
>LSEI_1019(glmS) Score=5.2 Pos=-48 [Lactobacillus casei ATCC 334]
AAATCTGTCTAAACCAATTT
>LSEI_2889(nagB) Score=5 Pos=-77 [Lactobacillus casei ATCC 334]
ATTACGGTATAGACCACTAT
>LSEI_2889(nagB) Score=5.1 Pos=-34 [Lactobacillus casei ATCC 334]
ACATTGGACTAGACCAGATA