# TF - XylR: LVIS_0464, LVIS_2109
>LVIS_0462(xylS) Score=5.3 Pos=-150 [Lactobacillus brevis ATCC 367]
GTTGGTTTAGTAAACCAATTTAC
>LVIS_0463(xynT) Score=5.3 Pos=-151 [Lactobacillus brevis ATCC 367]
GTAAATTGGTTTACTAAACCAAC
>LVIS_0183(xylA) Score=5.7 Pos=-42 [Lactobacillus brevis ATCC 367]
GTTGGTTGTCGCAACGAACTAAC
>LVIS_2109(xylR) Score=5.4 Pos=-154 [Lactobacillus brevis ATCC 367]
GTTGGTTGGTTCACTGAACCATG
>LVIS_2287 Score=5.1 Pos=-90 [Lactobacillus brevis ATCC 367]
GTTGGTTGCTTTCGACAACTAAT
>LVIS_0185 Score=5.4 Pos=-111 [Lactobacillus brevis ATCC 367]
CATGGTTGGTTGCGGCAATCAAC
>LVIS_0185 Score=6.1 Pos=-107 [Lactobacillus brevis ATCC 367]
GTTGGTTGCGGCAATCAACCAAC
# TF - CcpA: LVIS_1203
>LVIS_2210(ptcA) Score=4.3 Pos=-96 [Lactobacillus brevis ATCC 367]
TTGGAAACGCTTCCCA
>LVIS_0183(xylA) Score=3.9 Pos=-91 [Lactobacillus brevis ATCC 367]
GCGAAAACGCTTGCAT
>LVIS_0238(glpK) Score=4.3 Pos=-46 [Lactobacillus brevis ATCC 367]
TTGGAACCGGTTTCGT
>LVIS_0254(adhA) Score=4.2 Pos=-90 [Lactobacillus brevis ATCC 367]
ATGTAAGCGCTTACGC
>LVIS_0465(bglA) Score=4.2 Pos=61 [Lactobacillus brevis ATCC 367]
TTGAAGGCGCTTACGA
>LVIS_1203(ccpA) Score=4.1 Pos=-49 [Lactobacillus brevis ATCC 367]
TTGAAAACGGATGAAA
>LVIS_1203(ccpA) Score=4.7 Pos=-107 [Lactobacillus brevis ATCC 367]
TCGAAAACGTTTTCAA
>LVIS_1589(rbsD) Score=4.3 Pos=-199 [Lactobacillus brevis ATCC 367]
TTGTAAGCCCTTTAAT
>LVIS_2179(malT2) Score=4.9 Pos=-38 [Lactobacillus brevis ATCC 367]
TTGAAAACGGTTACTT
>LVIS_0463(xynT) Score=4.7 Pos=-202 [Lactobacillus brevis ATCC 367]
ATGTCAACGCTTTCAT
>LVIS_0463(xynT) Score=4.2 Pos=-115 [Lactobacillus brevis ATCC 367]
GTGTAAGCGGTTGCAG
>LVIS_2109(xylR) Score=4 Pos=-122 [Lactobacillus brevis ATCC 367]
GTGTTACCGTTTGCAA
>LVIS_1619(glpF2) Score=4.7 Pos=-113 [Lactobacillus brevis ATCC 367]
ATGATACCGCTTACAA
>LVIS_1743(araE) Score=4.4 Pos=-79 [Lactobacillus brevis ATCC 367]
TTGAAAGGGCTTTCGA
>LVIS_1904(galK) Score=4.7 Pos=-98 [Lactobacillus brevis ATCC 367]
ATGAAAACGTTTTATA
>LVIS_0621(lrgA) Score=4.4 Pos=-235 [Lactobacillus brevis ATCC 367]
GTGTAAGCGTTTCCTT
>LVIS_0311(pnuC) Score=4.6 Pos=-188 [Lactobacillus brevis ATCC 367]
TTGAAAGCGCTTTATG
>LVIS_1656(pmi) Score=4.8 Pos=-86 [Lactobacillus brevis ATCC 367]
TAGAAAGCGCTTGCAA
>LVIS_2029(ycbA) Score=4.7 Pos=-65 [Lactobacillus brevis ATCC 367]
TAGAAAGCGTTTTCGT
>LVIS_0765(pyk) Score=4.1 Pos=-181 [Lactobacillus brevis ATCC 367]
CGGAAAACGCTTACTT
>LVIS_2191(dhaT) Score=4.6 Pos=-191 [Lactobacillus brevis ATCC 367]
TTGAAAGCGGTAAAAA
>LVIS_0119(adhE) Score=4.4 Pos=-173 [Lactobacillus brevis ATCC 367]
CTGTATGCGCTTACAT
>LVIS_0323(gabD) Score=4.9 Pos=-150 [Lactobacillus brevis ATCC 367]
TTGAAAACGGTTAAAT
>LVIS_1586(gntP) Score=4.5 Pos=-19 [Lactobacillus brevis ATCC 367]
ATGAAAGGGCTTACTT
>LVIS_0438(LVIS_0438) Score=4.3 Pos=-75 [Lactobacillus brevis ATCC 367]
AGGAAAACGTTTACCA
>LVIS_0438(LVIS_0438) Score=4.2 Pos=-97 [Lactobacillus brevis ATCC 367]
ATGAAAGCGTTTGACA
>LVIS_1204(pepQ) Score=4.9 Pos=-103 [Lactobacillus brevis ATCC 367]
TTGAAAACGTTTTCGA
>LVIS_0357(malT) Score=4.2 Pos=-71 [Lactobacillus brevis ATCC 367]
ATGAAAGCGGTGCCAT
>LVIS_0695(lp_0827) Score=4.9 Pos=-166 [Lactobacillus brevis ATCC 367]
TTGACAGCGCTTACAA
>LVIS_1410(pdhA) Score=4.4 Pos=-117 [Lactobacillus brevis ATCC 367]
ATGAAAGGGCTTGCAA
>LVIS_0180(lplA1) Score=4.7 Pos=-101 [Lactobacillus brevis ATCC 367]
TTGTAATCGATTACAA
>LVIS_2259(lacL) Score=4.5 Pos=-32 [Lactobacillus brevis ATCC 367]
GTGTAAGCGTTTTATA
>LVIS_2031(arcD) Score=4.5 Pos=-40 [Lactobacillus brevis ATCC 367]
ATCAAACCGCTTTCAT
>LVIS_0313(spxB) Score=4.3 Pos=-152 [Lactobacillus brevis ATCC 367]
TTGAAAGCGTGAACAA
>LVIS_2178(malR3) Score=4.8 Pos=-172 [Lactobacillus brevis ATCC 367]
AAGTAACCGTTTTCAA
# TF - PdxR: LVIS_2153
>LVIS_2153(pdxR) Score=9.4 Pos=-66 [Lactobacillus brevis ATCC 367]
AATTGGCTT----------CAGCCAATT
>LVIS_2152(pdxK2) Score=9.4 Pos=-83 [Lactobacillus brevis ATCC 367]
AATTGGCTG----------AAGCCAATT
# RNA - THF
>LVIS_0823(folT) Score=78.3 Pos=-132 [Lactobacillus brevis ATCC 367]
TTACGGAGTAGGAAATAAAGCGTCAAGTGCCGGTGGAACGCAATGTGAACACCGGACGAAGGGCAATTGGCCCGCGATTTTATTTCCGCATTGGCCGCA
# TF - AraR: LVIS_1744
>LVIS_1743(araE) Score=4.4 Pos=-212 [Lactobacillus brevis ATCC 367]
AAATTAATCCGAATAACAAA
>LVIS_1743(araE) Score=6.1 Pos=-183 [Lactobacillus brevis ATCC 367]
TGATTTATGCGTACAAATAT
# RNA - L10_leader
>LVIS_0590(rplJ) Score=76.7 Pos=-152 [Lactobacillus brevis ATCC 367]
AGTTATGAATTGATCTACCTAAGACTCAGGTGACCAAATTGGTCTTAATCACCGCCTGCCGAGGCAGAAGTTTACTTAAACTTTTGACTCCTTATGTCTTGGTGGCATAGGGATTTTTTTATCCCACCAA
# RNA - TPP
>LVIS_2099(thiM) Score=64.3 Pos=-334 [Lactobacillus brevis ATCC 367]
ACCAAAACACTAGGGGTGTCCACAAATGGGCTGAGATATGGCAACGCCATGATCCCTTAGAACCTGTCAAGTTCAGACTTGCGGAGGGAACGTGTCGTGGCACCCAA
>LVIS_1827(ykoE) Score=58.1 Pos=-180 [Lactobacillus brevis ATCC 367]
ACATATGACTGGGGTGCCACTATGGCTGAGATTAAACCCATTGAACCTGCTCTGGTTAGGACCAGCGAAGGGAACGCGTCTAATTTAGACTTA
# RNA - FMN
>LVIS_0772(ribU) Score=110 Pos=-233 [Lactobacillus brevis ATCC 367]
TTCATCTTCAGGGCAGGGTGGAATTCCCGACCGGCGGTAAAGTCCGCGACCCGCGTGAGCGGTTGATTCGGTGTAACTCCGAAACCGACAGTAAAGTCTGGTATGCAGAAGATGAGACG
>LVIS_1653(ribD) Score=118.4 Pos=-264 [Lactobacillus brevis ATCC 367]
ATGATTTCTTCGGGGCAGGGTGAAATTCCCGACCGACGGTGACAACTTAAAGTTGAAGTCCGTGACCCACGTTTAACGTGGTTGACCCAGTGTGAGTCTGGGACCGACAGTATAGTCTGGATGGGAGAAGAAACGA
# RNA - PyrR
>LVIS_0487(pyrG) Score=17.8 Pos=-125 [Lactobacillus brevis ATCC 367]
GCTCCTTGCTACTTGTAGTGAGGACAACTGAACGGTGAGCTCCCTATTCGCAATGGATAGGGAGCTTTTTTATAG
>LVIS_0416(ntd) Score=51.2 Pos=-146 [Lactobacillus brevis ATCC 367]
AGTCCTTTTAAATTAGTCCCGTGAGGCTAATAAGGGTCCGGTAGAATTCATTGATGAAATGAAGCTAGCGGTCTAAATCCTTGCGGAATTTGGACCGCTTTTTTTA
>LVIS_2229(pyrF) Score=46.3 Pos=-129 [Lactobacillus brevis ATCC 367]
ATCAAACTTTAATTTAGCCCTGTGAGACTAAAAAGGTGAACGGAAATGGCCCTCAGTAGATGAGTGGGTCTATAGCCGGTTAGCCTAATACGGGGCTAACCGGCTTTTTTTG
>LVIS_1729(pyrP) Score=47.3 Pos=-128 [Lactobacillus brevis ATCC 367]
ATAGTCCTTTAATATTGTCCCGTGAGGCAATGAAGGTACGACGTTTCTGGCGCAAGCTGGGCTTAATTGGCGTACACGTTTCCTTACGGGACGGGTGCGCTTTTTT
# RNA - L13_leader
>LVIS_1658(rplM) Score=40.2 Pos=-78 [Lactobacillus brevis ATCC 367]
TGGTATTGTTTGCCCCACGATAAGCCCCGGAAAGTTTACTTGGTGTCAGACAAACACAGA
# RNA - L19_leader
>LVIS_0939(rplS) Score=25.4 Pos=-58 [Lactobacillus brevis ATCC 367]
AACAACATTCCGCTGTCGAACCTGAGGATGAATGTTGG
# RNA - L20_leader
>LVIS_1035(infC) Score=50.8 Pos=-235 [Lactobacillus brevis ATCC 367]
AGAAATTAAGCAGAGGCTTCCGCTTCTCGCCTTATGACTAACGTTATTGGGCTGGATATGCACGTTAATGTCGTCTTCGTGATGACATTTCTTGCGGGAGCCGTTTGATTCTGATCAAAGGTTCCCGCATTTTTTGTGAGTG
# RNA - L21_leader
>LVIS_0985(rplU) Score=61.4 Pos=-99 [Lactobacillus brevis ATCC 367]
TCCACAGCTGCAACCGCTCGGAACGAGTTTAAGTTTTCCGCTTGCGGAGCACTTGTCTTCGGCGAGTCTAAGTCTAAAA
# RNA - Lysine
>LVIS_1712(lysP) Score=121.3 Pos=-301 [Lactobacillus brevis ATCC 367]
ATCGAATAGAAGAGGCGCGACCAACAAGAGTCGCTTTCCGGAGATGGGTCACATTGCTGATGGAAGGTTAAAGGGGCGGTCGCCGAAATTTACGCATTTTGACCGGATGCGTGGGTTGGGTCCTGGTTGAACAAGTCAGGGACTGTCGCAGTCAAATAATCGGCTGCGGGGCGCTTTCAACGAT
# RNA - Purine
>LVIS_1838(pbuX) Score=67.6 Pos=-226 [Lactobacillus brevis ATCC 367]
AATTAAAATAAGTGATTGCCTATATAATGCCATAATAAGGTTGGCGAGTTTCTACCCAGGACCGTAAATTCTGGACTATAAGCAAATTGAGATGAACTCT
# RNA - S15
>LVIS_1392(rpsO) Score=13.9 Pos=-53 [Lactobacillus brevis ATCC 367]
CACCGCCGGCTTACTCAGTTCGGGGCACTTATTTGAAAGGTGGTACTTTTACCATGGCTATTAGTCAAGCAAAGAAGAACGAAATCATCAAGCAATACGCTCGTCACGAA
# TF - Rex: LVIS_0616
>LVIS_0119(adhE) Score=5 Pos=-105 [Lactobacillus brevis ATCC 367]
TTGTGATTTTTTTAACAT
>LVIS_0119(adhE) Score=4.8 Pos=-47 [Lactobacillus brevis ATCC 367]
TCGTGAAGAAGTTAACAA
>LVIS_2165(gldA) Score=5.3 Pos=-37 [Lactobacillus brevis ATCC 367]
TTGTGAAAATAATCACGA
>LVIS_0616(rex) Score=4.4 Pos=-137 [Lactobacillus brevis ATCC 367]
TTGCAAATTCTTTCACAA
>LVIS_1558(noxE) Score=5.4 Pos=-44 [Lactobacillus brevis ATCC 367]
TTGTGAAAATTATCTCAA
>LVIS_0911(adhB2) Score=5.2 Pos=-36 [Lactobacillus brevis ATCC 367]
TTGTGAATATTATATCAA
>LVIS_1019(adhB1) Score=4.8 Pos=-79 [Lactobacillus brevis ATCC 367]
TTGTGCAAAATTTCACTT
# RNA - ykkC-yxkD
>LVIS_2166(ykkC) Score=70.1 Pos=-175 [Lactobacillus brevis ATCC 367]
AATTTGTTCTCTAGGGTTCCGCCACACGGGTCTGGTCCGAGAGAGAACCTGCGGGTCAGTCCGTAGACACGGAAGGGAAAAAGCCTGGGAGATTT
# RNA - ykoK
>LVIS_2157(lp_2077) Score=132.3 Pos=-376 [Lactobacillus brevis ATCC 367]
AATAAATTGCAATTAGGTGAGGTTACTTTAAGAACATAGGTTGTTGCCCAGAAATGTCGAGAGACAGGAATGAGTAAAGCAGAAACTGCCGAATTAAGGCTTTTTCAAAACAACTAGACTAGTTCTTACGTCTTAAAGTGCTAAAACTCAATGAATGCGTCGATA
# RNA - yybP-ykoY
>LVIS_0947(atcL) Score=58.9 Pos=-181 [Lactobacillus brevis ATCC 367]
CTACAGCAACATAAGGGAGTAACTAGCAGAACGTTTCTGCGGCAATTCCGTCAGCAAGAAGCCAATCCGGGATTGCCTTAAATAGTGAGACTTATGTGTGTTCA
# RNA - T-box(Ala)
>LVIS_1223(alaS) Score=54.9 Pos=-237 [Lactobacillus brevis ATCC 367]
TATTTCAATAATATATGAGCTGAGGATATGCCACGTCAGCGTGATTTTCAGAAACGTTTTGGATGCTGCGAAAAACGAGTCACGATGGCCTTGGTGCTCCCTCACAAACAACGCGACTCAGCGTTATGAGTTTAAGAGGTTAACGATTAAAACATCGTTGCAAGTAAAGTGGTACCGCGCTTCGGCGTCTTTACG
# RNA - T-box(Asn)
>LVIS_1649(asnA) Score=83 Pos=-308 [Lactobacillus brevis ATCC 367]
AAAAAACGGAGGAAAGACAAGTACGTTTGGTCAACCTGCCAGTGAGTTGGGACTTAGTGTAAACCCAATCAGTGTGGATCTTACGGAATAACCCTTTCTTAGTTGCTACCTGAAATGACCCGGGTCATAGTAGGGCGAGCCGTCACCGATACGTTACCATCGGGGAGTATGTTTGTACTCTGATTGAGTTGGTTTATCGTTGCATAAACAACTTGGGTGGTACCGCGAAAAGTCTTTCGTCCCTAGATA
>LVIS_2017(asnS2) Score=70.9 Pos=-303 [Lactobacillus brevis ATCC 367]
ACAAAAACAAGAGAAATGGTCAATGTCCCATCTGGTCGGATGGCGTAGCGAGCTAAGGATAGTGAGAGCTTAGTGTGTCACCAATTGGGGATAACCCCGTTTCTGTTGCTGGCTGAAATTATTAAAGTAGGCTACGCCGTGACCGACACGTTATCAAACGGAACGTATGCTAGTACGTTATTAAAGTTGGTTTTGAATTTAAAACAATTTGGGTGGTACCGCGGAAAGATCTTTCGTCCCTGTG
# RNA - T-box(Asp)
>LVIS_0735(hisS) Score=63.9 Pos=-238 [Lactobacillus brevis ATCC 367]
GATTGCCAAAGAGAAAGACTAGTAAGGCCTACCCCGCTGACAGAGACGTCAACTTGCTGAAAATGACGAACGGGCGCAACTTGAAGACACTTTTGAGGCTAATGGTGGCAGTAGCGACCATTCGTTTGCAACGTTATCCTGCAGAAAATATAAAAGGTGGTACCGTGCATACCTGCGCCCTTGTCAA
# RNA - T-box(Arg)
>LVIS_1491(argS) Score=75.2 Pos=-273 [Lactobacillus brevis ATCC 367]
TTCACCATCACTGGAATAGTAATTTAAGTGGTTTCTCCTCAGCAAGTCCGGGTAGCTGTAAGCCGGAAGGGAATCTTTAAATGAACGGGTCAGTGGCGACTAATTTAATTCAATCATTTAAGTGGACTTTAAAGTCAATTAGAGTGGTACCGCGGGTAATCTCGTCTCTTAC
>LVIS_0024(oppA) Score=101 Pos=-276 [Lactobacillus brevis ATCC 367]
AAACGACGTTGCCCAGAAGAGTAATGGTGGATCAACTGTTTAGCGAGTCCGGGAATGATGGAAGCCGGGTCAGCAATCGCCATGAAGCGCATCTGGAAGTCGTACGGGTGAAATGAGTAGTCCGTACTGGGTCGTGCCCATTAACGCACGCGGTGTTCTCATGAATACCATAAGAGATAAATCAAGGTGGTACCGCGAATCGTTCGCCCTTGTTGA
# TF - MntR: LVIS_1718
>LVIS_0331(mntH) Score=4.3 Pos=-213 [Lactobacillus brevis ATCC 367]
ATTTTTGGTAAGCCAAAAAT
>LVIS_0225(mntH) Score=5 Pos=-19 [Lactobacillus brevis ATCC 367]
AAGGAAGGGAGTCTTAAAAT
# RNA - T-box(Gly)
>LVIS_0753(glyQ) Score=58.4 Pos=-245 [Lactobacillus brevis ATCC 367]
AGTCGATTATGATGAATGAGAAACATAGTGTTGATTCTTAGCGAGTTCGGGAGAGTGGGAGCCGAATAATTGGTGCTGTGGGTTGGCACATTCGGAGTCGTTTCCAAGTAAGCTGCTAATCGGTGATCGATTAGAAGTAGGGTGGAACCGCGAAATTAAAACTTCGTCCCTACGTG
# RNA - T-box(Ile)
>LVIS_0011(oppA) Score=84.7 Pos=-367 [Lactobacillus brevis ATCC 367]
TTAAAAAGTGATGATGAAGTCCAGTAGTGACCAACCACCTCTTCAGCGACCCCGGTTTAGTGTGAGCGGGGACAGGTGCTGGTGACGAACATCCCTTCGGAGCCGTTAGCTGAATTTAAGTAAGTTTACACCGGAAGCATCCGTTATCAATGCAGTGAATCGCGGGCAGGATTGTCCTTTAGCGAGCCTAGCGCTAAATTCCGATCTCTTAGGTCGTCCGCCGTTCATAGATAAGGCTACTTTTTGAGTAGCAAAAAATAAGGTGGTACCGTGCGAACAGCACCCTTACG
>LVIS_1441(ileS) Score=75.9 Pos=-356 [Lactobacillus brevis ATCC 367]
AATAATGGCATGAAGAACCACGTCAACTAAAAAGATGGTTTTAGCGAGTTAGCGATAGTGGAAGGCTAACAGCCCGCTCTTTTAGGTGATATCACTCTTCCAAGCTCTGTAGCCGAATCACAGTAAGCTATAGCGAGAACGTCGCGATATGACGATTGAGGGTTAATGTTAGTTGAACATTAACCGAATTTGGGTGGTACCACGAACGATTTCGTCCCTTGA
>LVIS_2122(brnQ) Score=81.7 Pos=-289 [Lactobacillus brevis ATCC 367]
TTATAAAACGTTGAAGAAAAAAGTAGCGTGGATAGCGATGTCTAGTGAGTCACGTTGAGTGAGAAGTGACCATCTCGTCCTAGTGAAAATCATTTCTGAGTTCGGTGCTGATTTTGTAGGTTACCGTGGCAGCCACCATTACTAGGCTAGCGGATGTTGGTCCGTGATGAGTGTGGCATTTTTGGAGGCCACAAAAAGGTGGTACCGTTCTACTGAATTAGAGCCCTTTTC
# TF - PurR: LVIS_0474
>LVIS_2274(pbuG) Score=5.6 Pos=-66 [Lactobacillus brevis ATCC 367]
AAACACGAACAAT
>LVIS_0474(purR) Score=5.3 Pos=-91 [Lactobacillus brevis ATCC 367]
AAACCCGAACAAT
>LVIS_0228(purB) Score=5 Pos=-190 [Lactobacillus brevis ATCC 367]
AAAAGCGAACTAT
>LVIS_0227(purA) Score=5.3 Pos=-247 [Lactobacillus brevis ATCC 367]
AAAAGCGAACATT
# RNA - T-box(Leu)
>LVIS_1062(leuS) Score=89.4 Pos=-271 [Lactobacillus brevis ATCC 367]
GATCTAAACGTTGACGAGAAGTAGTAGTTGATGCTAGTGTTCAGCAAGCGGATGGGTGCTGTGAATCCGTGATTAGCGTCAACGAACTTGTCTCTGAGTTTTTCTGCTGCAAGGTGGGCGTCTGGCGACGTTATCAGCCGGTGAGTGCCTCAAATCACTGATTGGGGAATTGTAGGTGGTACCGCGCAAAGACGCCCTACAG
>LVIS_0014(oppA) Score=79.7 Pos=-347 [Lactobacillus brevis ATCC 367]
CTTAAAAGTGATGACGAAGACTAGTACCCCTGTTGCTCATTGTTAGCGAGCCCGGTTAAGTGCAAGCGGGTCAAGAACAATGGTGGAAACTCCCTTCTGAACTGTCAGCTGAATTCACAGTAAGCCCGACCGGTGGCCCCGTTATCCCCAAGTGAATCGCGACCTGGCCCAACTAACGGGACCTAGCCCGTGACATTTGGCCTTCTAGGAGTGTCGCCGTTCACGATTGAGTCCCAATTAAGGTGGTACCGTGCGCAAGCGCCCTTACA
# RNA - T-box(Met)
>LVIS_0258(metE2) Score=56.5 Pos=-312 [Lactobacillus brevis ATCC 367]
ATAAATAAAGCTCGGAGAAGAGTAGTGGATTCCGTGTTGTGCAGTGAGCCCGAACAGTGAGAACGGGTCAACCACGGTATCATGAAGATGAACTCCTAATAGCTATTGAGCGATTCACGTTGCTCAGTCGGTAGGAACCGTTAACTTTCCGGGTATCAACTGGTACCGTTGAGGCAAGGTCTGTGAGGATCTTGTGAATTTAGGGTGGTAAAACGACGCGTTCGTCCCTTGAAC
>LVIS_1957(metQ) Score=82.4 Pos=-346 [Lactobacillus brevis ATCC 367]
TGAAAACAATGTGATCAGGAGAGTAACCACCGTCAATGGTTCGTAGAGAGTTCGTGATTTGCTGCAAGCGAATAACCCACGGCGGGGTGAAGATGGCCTGAAATGAATTGGTATCACTGAGTCTGATTGATGAGGTGATAATGTTTGGCACTCATTACCGTGCACGCACTTCAAGGCGCAAGCTGGCGAGTGTTAATGAGGGGCCAGACATTTTTGTCTGACTTGAATTAGAATGGTACCACGACAAAGTTCGTTTCTATT
>LVIS_2175(oppA) Score=91.1 Pos=-280 [Lactobacillus brevis ATCC 367]
TGAACGCATGACTAGGAAGAGTAGCTGTTCTCGCTAAGACAAGAGACCACCGGTAGCTGAAAAGGTGGCTTACAACTGAGCGGCGAAGATGAACCTAGGAGCAAGTCACCGGTGGAAGCTGGTGGCTCGGGTTGAAGCCCGTTACCGCTTCCGACTTTTGGCAACAGAAGTTACGGAGATGGTGGATGTGAATCCACCATGAATCAAGGTGGTACCGCGAGTGAAATCGTCCTTATGTT
# RNA - T-box(Phe)
>LVIS_1010(pheS) Score=83 Pos=-291 [Lactobacillus brevis ATCC 367]
GTTAAAAACGATGATAGAAAAGTAGTAACCGGAACGGTTTGTCAGGAAGAGTCTGCCTAGACTGTGAGCAGACTTCAAAGCGATAGGTGAATTCAGTTCTTGAGTTGTCGCCAGGACGCAACTTAGTTGTTGTGAAAAGGTGTTCCGGTACGTGACCGTTATCACGACTGAGTGTGGTTGGGGATGAAATCCCTAACTGAATCAGGGTGGTACCGCGATGCTTCGTCCCTAGT
# RNA - T-box(Ser)
>LVIS_1710(serS) Score=53 Pos=-240 [Lactobacillus brevis ATCC 367]
AATAAACACGAGGTGCCTATCCAGTAGACGGCCAGAGAAGCGGGGAAAGCTGCAAGCCGCAACGTCGAAAATTCCAGCACTAAAAAAGTGGGCGGGTAATGCCGCACGGTGCAGACCGTTATCATGTTCAAGGGTGTCATTGCGTGCAATGACGAACTTGGGTGGTACCGCGAAGGTCTTCGTCCCATGT
# RNA - T-box(Thr)
>LVIS_1036(thrS) Score=60.2 Pos=-280 [Lactobacillus brevis ATCC 367]
CAAAAGAGCTATGACGAAAGACATGGTGTTACCGGAGTTCGTTTACAGGAAGAGTTGGCCTAGCTTGGAAGCCACTTAGCGCCCGGAAGCATTACCACTTTCTTAGCTGTTGGAAGGAAATTTCCGACCGGTCCGTTCCGTTAACGACGACTAGAGTTCACGGGAGTAGTCTCGTGAAAAATATCGGGTGGAACCACGTTATTGACGTCCCCAGT
# RNA - T-box(Trp)
>LVIS_0448(trpS) Score=68 Pos=-223 [Lactobacillus brevis ATCC 367]
AGACTAACGATAAAAGTAGTCCGAATTCAGAGAGGAAATGGCTTGGTGCAACGTTTCCAGTGACGAAGTGGGTCGTTAGATCACTTTAAAATTCGATGATTAGTGTCGCGGGGTCGCCGTTATCGACAAGAGGCAGTCATGAACTGCAAATTAGGTGGTACCGCGCGTTAGCGTCCTTTTAGC
>LVIS_0057(oppA) Score=99.7 Pos=-376 [Lactobacillus brevis ATCC 367]
AAACAAACCATTGAAGTGGAGATCAAGCTTATCATGCCCGCAAAGAGAGTCGTCGTTGCTGAGAGTACGGCCGAACGCAGGTAAGTAAATGGACCACCGAGGGCTTCCCCGAATTTATAGTACGGGAAGACGTGCGACATACGTCAGTTGTCAGGGAAATGTTAGTTTCCTGTGGAGAGGGGCGCAGACGCTTATTTGCGTATCTGCGTTCAATTAAGGTGGTACCGCGGTTAAAAGTTAACCGTCCTTAAC
# RNA - T-box(Tyr)
>LVIS_0199(tyrT) Score=59.6 Pos=-278 [Lactobacillus brevis ATCC 367]
TAATTTCCATTACCAAGTAGCGTGTCATCTGGGTGTCAGAAAGTCGGTGGTTGCTGCGAACCGATCAGGGTGATTACGACGAAATACAGTGGGATGTCCTGGTCCGCCAGGCGGGAAATAACTAGAGCCGTTACCTTCTAGTGAGTGGAGTGACTGGGTCTAGAACCAGTGGCTCAAGTTGGGTGGTACCACGGTTTAGTCTAAAATCGTCCCTGTTGC
>LVIS_2216 Score=51.7 Pos=-459 [Lactobacillus brevis ATCC 367]
TAAGAAATCTTTCAAACGAAGTAGTGACTTATCTGAGGGTTCAGAGAATTGGCGGTTGGTGCAAGCCATGCAGGGTAAGCTTAACGAAATACGAAAGGTGTTTCTTCGGGGTATCTCCACGTTATTGGGGATTAAAGTGCAGCGGACTTAGGTCCCTGAAGCTGGGTGGTACCGCGCTAAGGCGTCCCTTCT
>LVIS_0424(tyrS) Score=99.6 Pos=-251 [Lactobacillus brevis ATCC 367]
CATAAGCAAAGAAGCAGTTCAGTAGTGGTGGCGGCTCCGGTTGAGAGATTTGACGGTGCTGGGAGTCAAAACGTCCGTGGCCATGAATTACCCTGTGGAGCGGCCGAGGTGTCGGCGGGTCATTCCGTTAACAATGACGAGCGGTTGTCAATCGACAACAACTTGGGTGGTAACGCGGATTTCAATTCGTCCCTGATGG
# RNA - T-box(Val)
>LVIS_1253(valS) Score=121.3 Pos=-281 [Lactobacillus brevis ATCC 367]
AAAACTAGCGTTGAACAAGTCAGTAGCGTGATGACCAACCAATAGAGAGCTGGGAATGCTGGAAACCGGTGGTGGTGATGACGTGAACGTAGCTTGCGAGCTGAAAGGCTGAACTAATAGTAGGCCTTTTCCGGAGCACTCTCCGTTAACAAAGAAGTTAAGTGGGGCATAAATGCCCAATTTAGGTGGTACCGCGAAGACTCTTCGTCCTAATT
>LVIS_2119(brnQ) Score=78 Pos=-290 [Lactobacillus brevis ATCC 367]
TTATAAAACGTTGAAGAAAGTAGTAGCAAAGCGGTTGATGTTTAGCGAGTCACGGTCGATGCAAGGTGACCATCAGCGGTTTGTGAAGGTTAATTCTGAGTTCGGTAGTTGCTAAGGCTATCGTGGTGGCCACCATTACCTGGCTAGCGGATGTTGGTCCGTGAAGTGCGGTGATGATGTCGTCGCAAAAAGGTGGTACCGTTCTACTCGTAGAGCCCTTTTC
# TF - GlnR: LVIS_0991
>LVIS_1775(gluQ) Score=5.7 Pos=-260 [Lactobacillus brevis ATCC 367]
GTGTTAGAATTTATAACAT
>LVIS_0844(nrgA) Score=6 Pos=-42 [Lactobacillus brevis ATCC 367]
GTGTTAGAATTCCTAACAT
>LVIS_0844(nrgA) Score=5.3 Pos=-177 [Lactobacillus brevis ATCC 367]
ATGTCATAAAAATTAACAT
>LVIS_0991(glnR) Score=6.3 Pos=-82 [Lactobacillus brevis ATCC 367]
ATGTCAGAAAACCTAACAT
# TF - CopR: LVIS_0270
>LVIS_0270(copR) Score=5.4 Pos=-68 [Lactobacillus brevis ATCC 367]
ATGACTACAGATGTAGACTC
>LVIS_0270(copR) Score=6 Pos=-35 [Lactobacillus brevis ATCC 367]
AAGATTACATTTGTAGTCTA
>LVIS_0274(copA2) Score=5.7 Pos=-139 [Lactobacillus brevis ATCC 367]
AGGATTACATTTGTAAACAA
>LVIS_0274(copA2) Score=5.1 Pos=-184 [Lactobacillus brevis ATCC 367]
TCGTTGACAGATGTAAACGA
# TF - FabT: LVIS_0936
>LVIS_0937(fabA) Score=5.3 Pos=-206 [Lactobacillus brevis ATCC 367]
GGTTTGATATTCAAATT
>LVIS_0937(fabA) Score=6 Pos=-55 [Lactobacillus brevis ATCC 367]
AGTTTGAACATCAAATT
# TF - MalR: LVIS_0356
>LVIS_0357(malT) Score=6.2 Pos=-93 [Lactobacillus brevis ATCC 367]
TTGCGCAATCGGTTGCATTA
# TF - DeoR: LVIS_1592
>LVIS_1595(deoC) Score=5.7 Pos=-19 [Lactobacillus brevis ATCC 367]
ATGAAAGGGGTTTCAT
# TF - SdaR: LVIS_0411
>LVIS_0411(sdaR) Score=4.8 Pos=-190 [Lactobacillus brevis ATCC 367]
AATTGATCAATGTAACTATG
>LVIS_0412(grtP) Score=4.8 Pos=-123 [Lactobacillus brevis ATCC 367]
CATAGTTACATTGATCAATT
# TF - CggR: LVIS_0660
>LVIS_0660(cggR) Score=6.5 Pos=1 [Lactobacillus brevis ATCC 367]
TGCATGAGGATTGGCAATGGGTAGAGGCCATCATGCC
# TF - PadR: LVIS_0214
>LVIS_0214(padR) Score=7.1 Pos=-208 [Lactobacillus brevis ATCC 367]
GAACATGTAATTAATTACATGTTT
>LVIS_0213(padC) Score=7.1 Pos=-48 [Lactobacillus brevis ATCC 367]
AAACATGTAATTAATTACATGTTC
# TF - PerR: LVIS_1882
>LVIS_0392(cadA) Score=4.6 Pos=-52 [Lactobacillus brevis ATCC 367]
CAATAATTGTTATAA
>LVIS_B09(npr) Score=5.9 Pos=-90 [Lactobacillus brevis ATCC 367]
TTAGAATGATTCTAA
>LVIS_1881(pcl2) Score=5.6 Pos=-98 [Lactobacillus brevis ATCC 367]
TAAGAATTATTCTAA
>LVIS_1917(ycnB) Score=5.2 Pos=-39 [Lactobacillus brevis ATCC 367]
TAAGAATATTTCTAA
>LVIS_1882(perR) Score=5.5 Pos=-186 [Lactobacillus brevis ATCC 367]
TTAGAATAATTCTTA
>LVIS_0086(ahpC) Score=4.9 Pos=-82 [Lactobacillus brevis ATCC 367]
TTAGAATCATTCTTG
# TF - RbsR: LVIS_1422
>LVIS_1421(rbsK) Score=6.5 Pos=-50 [Lactobacillus brevis ATCC 367]
TACGTAAAACGTTTTACAAA
>LVIS_1589(rbsD) Score=5 Pos=-125 [Lactobacillus brevis ATCC 367]
TAAGTAAATCGATTTACGCA
>LVIS_1588(rbsP) Score=5.2 Pos=-48 [Lactobacillus brevis ATCC 367]
GATGTAAAACGTTTTACGAT
# TF - ArgR: LVIS_1490, LVIS_0973
>LVIS_1200(artPQ) Score=4.6 Pos=-161 [Lactobacillus brevis ATCC 367]
AATGTATAAATTTTTATA
>LVIS_1200(artPQ) Score=4.9 Pos=-96 [Lactobacillus brevis ATCC 367]
AGTGTATAAAAATAGATA
# TF - GalR: LVIS_1901
>LVIS_1906(LVIS_1906) Score=5.1 Pos=-222 [Lactobacillus brevis ATCC 367]
ATTGATTTACTAAATTTTT
>LVIS_1908(galM) Score=5.3 Pos=-84 [Lactobacillus brevis ATCC 367]
CGAATTTTAGTAAAAAATT
>LVIS_1904(galK) Score=5.9 Pos=-38 [Lactobacillus brevis ATCC 367]
AAAACTTTACTAAAAATTT
# TF - HrcA: LVIS_1331
>LVIS_1331(hrcA) Score=6.9 Pos=-43 [Lactobacillus brevis ATCC 367]
TTAGCACTTGTGTTGTTTGAGTGCTAA
>LVIS_1331(hrcA) Score=6.1 Pos=-127 [Lactobacillus brevis ATCC 367]
TTAGCACTTAATTACGTTGATTGCTAA
>LVIS_1554(clpL) Score=6.4 Pos=-205 [Lactobacillus brevis ATCC 367]
TTAGCATTCTATTGACGAGAGTGCTAG
>LVIS_0617(groS) Score=6.4 Pos=-62 [Lactobacillus brevis ATCC 367]
TTAGCACTTATGTTAGTCAAGTGCTAA
# TF - Zur: LVIS_1778
>LVIS_0470(znuA) Score=6.6 Pos=-46 [Lactobacillus brevis ATCC 367]
TAAACGGTAATCATTACTGTTTA
>LVIS_0566(znuA) Score=6.8 Pos=-41 [Lactobacillus brevis ATCC 367]
TAAATAGTAATAATTACCATTTA
>LVIS_0360(rpsN2) Score=5.9 Pos=-37 [Lactobacillus brevis ATCC 367]
TAAAGCGTAATAATTACTATCAA
# TF - NrdR: LVIS_1039
>LVIS_1520(dgk2) Score=3.6 Pos=-41 [Lactobacillus brevis ATCC 367]
GTACACTATATCTTGT
>LVIS_1520(dgk2) Score=5.7 Pos=-39 [Lactobacillus brevis ATCC 367]
ACACTATATCTTGTAT
>LVIS_0597(nrdH) Score=4.6 Pos=-94 [Lactobacillus brevis ATCC 367]
CTACCAAATATGGTGT
>LVIS_1711(dgk1) Score=4.8 Pos=-100 [Lactobacillus brevis ATCC 367]
CCACGATATATTGTCT
>LVIS_1711(dgk1) Score=4.9 Pos=-68 [Lactobacillus brevis ATCC 367]
GTACAATATGTGGTGT
>LVIS_0597(nrdH) Score=4.5 Pos=-126 [Lactobacillus brevis ATCC 367]
ACACCATATTTGGTAG
>LVIS_0311(pnuN) Score=3.5 Pos=-41 [Lactobacillus brevis ATCC 367]
GTACTAAATATAGAAA
>LVIS_0311(pnuN) Score=5.8 Pos=-82 [Lactobacillus brevis ATCC 367]
CCACAATATATTGTGT
>LVIS_1898(nrdJ) Score=4.6 Pos=-45 [Lactobacillus brevis ATCC 367]
CTACCATATATAGCAT
>LVIS_1898(nrdJ) Score=5.3 Pos=-77 [Lactobacillus brevis ATCC 367]
TAACTATATATTGTAT
# TF - MalR3: LVIS_2178
>LVIS_2179(malT2) Score=5.5 Pos=-106 [Lactobacillus brevis ATCC 367]
TTACACAAACGTTTGCTTTT
>LVIS_2178(malR3) Score=5.5 Pos=-108 [Lactobacillus brevis ATCC 367]
AAAAGCAAACGTTTGTGTAA
# TF - HxlR: LVIS_0444
>LVIS_0438(LVIS_0438) Score=5.9 Pos=-76 [Lactobacillus brevis ATCC 367]
TAGGAAAACGTTTACCAT
>LVIS_0438(LVIS_0438) Score=6.1 Pos=-178 [Lactobacillus brevis ATCC 367]
TAGGTTAACGTTTTCCCA
# TF - CtsR: LVIS_1701
>LVIS_0654(clpP) Score=6.2 Pos=-90 [Lactobacillus brevis ATCC 367]
TTTTGTTTGACCTACTCTGACCTT
>LVIS_1554(clpE) Score=0.6 Pos=-84 [Lactobacillus brevis ATCC 367]
ATGGTCAAGAAAGGTCAAGCCTTT
>LVIS_0762(clpB) Score=-1.6 Pos=-139 [Lactobacillus brevis ATCC 367]
TTGGTCAAAAAAGGTCAAATTATT
>LVIS_1701(ctsR) Score=-1.1 Pos=-45 [Lactobacillus brevis ATCC 367]
TTAGTCAGCATTAGTCAAATAAGT
# TF - UxuR: LVIS_0145
>LVIS_0137(aglX) Score=6.7 Pos=-259 [Lactobacillus brevis ATCC 367]
AAAACTGATATATAAGCTAT
>LVIS_0136(uidB) Score=6.7 Pos=-119 [Lactobacillus brevis ATCC 367]
ATAGCTTATATATCAGTTTT
>LVIS_0139(uxuB) Score=6.6 Pos=-86 [Lactobacillus brevis ATCC 367]
AATACTGATATATAAGTTAT
# TF - LexA
>LVIS_0804(parE) Score=4.7 Pos=-70 [Lactobacillus brevis ATCC 367]
TTGAACATACGTTCGG
>LVIS_0812(xerC) Score=4.1 Pos=-112 [Lactobacillus brevis ATCC 367]
TAAAACAAATATTTTA
>LVIS_0812(xerC) Score=4.7 Pos=-27 [Lactobacillus brevis ATCC 367]
CAGAACATACGTTTGG
>LVIS_1383(uvrC) Score=4.4 Pos=-64 [Lactobacillus brevis ATCC 367]
CCAAACAAACATTCGG
>LVIS_1870(srmB) Score=4.1 Pos=-70 [Lactobacillus brevis ATCC 367]
TCGAACACGCGTTCAA
>LVIS_2268(addB) Score=4.4 Pos=-202 [Lactobacillus brevis ATCC 367]
TTGAACGTGTGTTCGT
>LVIS_1226(dinP) Score=4.2 Pos=-49 [Lactobacillus brevis ATCC 367]
GCAAACGCCCGTTCGG
>LVIS_0648(uvrB) Score=4.9 Pos=-101 [Lactobacillus brevis ATCC 367]
GCGAAAGTATGTTCGG
>LVIS_0763(dnaE) Score=4.7 Pos=-86 [Lactobacillus brevis ATCC 367]
ACGAACATTTGTTCAT
# TF - Lp_2742: LVIS_0389
>LVIS_0387(lp_2739) Score=6.7 Pos=-46 [Lactobacillus brevis ATCC 367]
TTAATTACACAAGTAACTAA
# TF - YtrA: LVIS_0408
>LVIS_0408(ytrA) Score=6.7 Pos=-60 [Lactobacillus brevis ATCC 367]
GTGTACTAGGTATAATAGTACAG
# TF - YwzG: LVIS_0242
>LVIS_0242(ywzG) Score=7.1 Pos=-36 [Lactobacillus brevis ATCC 367]
ATATTATACGTCGTATAGTAT
# TF - GntR1: LVIS_1584
>LVIS_1585(gntK) Score=5.2 Pos=-143 [Lactobacillus brevis ATCC 367]
AGTGAAACTTTTTTACATA
>LVIS_1584(gntR1) Score=5.2 Pos=-63 [Lactobacillus brevis ATCC 367]
GTTGTAAAATGTTTACAAA
>LVIS_1584(gntR1) Score=5.2 Pos=-95 [Lactobacillus brevis ATCC 367]
TATGTAAAAAAGTTTCACT
>LVIS_0144(gntZ) Score=6.3 Pos=-75 [Lactobacillus brevis ATCC 367]
TATGTAAATTTTTTTCATA
>LVIS_1585(gntK) Score=5.2 Pos=-175 [Lactobacillus brevis ATCC 367]
TTTGTAAACATTTTACAAC
>LVIS_1576(gntP) Score=4.6 Pos=-131 [Lactobacillus brevis ATCC 367]
TTTGAAAATAACATTCAAT
>LVIS_1576(gntP) Score=5.7 Pos=-99 [Lactobacillus brevis ATCC 367]
CTTGAAAATATTTTTCATA
>LVIS_0144(gntZ) Score=4.8 Pos=-106 [Lactobacillus brevis ATCC 367]
TTTGTAATTTTTTTACGGT
# TF - ExuR: LVIS_0147
>LVIS_0148(uxaT) Score=5.3 Pos=-215 [Lactobacillus brevis ATCC 367]
ATGTTAACGTGTGCAG
# TF - MleR: LVIS_2204
>LVIS_2203(mleS) Score=6 Pos=-103 [Lactobacillus brevis ATCC 367]
TATAAAATAATTTTATA
>LVIS_2204(mleR) Score=6 Pos=-52 [Lactobacillus brevis ATCC 367]
TATAAAATTATTTTATA
# TF - CzcR2: LVIS_0395
>LVIS_0396(cadD2) Score=6.1 Pos=14 [Lactobacillus brevis ATCC 367]
ATATGTTGAAAATAACATAT
>LVIS_0396(cadD2) Score=5.9 Pos=-2 [Lactobacillus brevis ATCC 367]
ATATGAATATGATAACATAT
>LVIS_0395(czcR2) Score=5.9 Pos=-40 [Lactobacillus brevis ATCC 367]
ATATGTTATCATATTCATAT
>LVIS_0395(czcR2) Score=6.1 Pos=-56 [Lactobacillus brevis ATCC 367]
ATATGTTATTTTCAACATAT
# TF - NihR: LVIS_1848
>LVIS_1849(PF09861) Score=4.7 Pos=-134 [Lactobacillus brevis ATCC 367]
CTTAACATTTGGTAAT
>LVIS_1848(nihR) Score=4.7 Pos=-87 [Lactobacillus brevis ATCC 367]
ATTACCAAATGTTAAG
# TF - AguR: LVIS_2205
>LVIS_2210(ptcA) Score=5.6 Pos=-157 [Lactobacillus brevis ATCC 367]
GAATGAAACATGTGTCACCA
# TF - YxeR: LVIS_2199
>LVIS_2199(yxeR) Score=5.1 Pos=-46 [Lactobacillus brevis ATCC 367]
TAAGTGACGCCGTGTCACTTA
>LVIS_2199(yxeR) Score=4.3 Pos=-90 [Lactobacillus brevis ATCC 367]
AAGTTGACACGGTGTCACTCA
# TF - FlrR: LVIS_0215
>LVIS_0215(flrR) Score=6 Pos=-95 [Lactobacillus brevis ATCC 367]
CGTTTCACTTGTAACG
>LVIS_0216(flr) Score=6 Pos=-32 [Lactobacillus brevis ATCC 367]
CGTTACAAGTGAAACG
# RNA - SMK_box_riboswitch
>LVIS_1523(metK) Score=53.3 Pos=-117 [Lactobacillus brevis ATCC 367]
CTTGAGTTATGAGTCAATTCCCGATAGGATTCACATGCTAGTGAAGCTGCCTTGTAACCGAATGGCGACGAGATTATCGGTCAACTTGCCGTCTACTATATCTAGGGGGAATATCCATTG
# TF - YhcF: LVIS_2001
>LVIS_2001(yhcF) Score=6.6 Pos=-39 [Lactobacillus brevis ATCC 367]
AGTGTAATAGTAAAATATAACACT
# TF - NagR: LVIS_0540
>LVIS_0539(nagA) Score=5.3 Pos=-66 [Lactobacillus brevis ATCC 367]
TTTCTGGTCTATACCGATTA
>LVIS_1312(pgi) Score=5.1 Pos=-82 [Lactobacillus brevis ATCC 367]
AATGTGGACTAGACCATTTA
>LVIS_1312(pgi) Score=4.5 Pos=-43 [Lactobacillus brevis ATCC 367]
ATAATGGACTAGTCAATAAT
>LVIS_0687(glmS) Score=5.3 Pos=-106 [Lactobacillus brevis ATCC 367]
ATTTCAGTCTATACCAATTT
>LVIS_0689(nagB) Score=5.4 Pos=-58 [Lactobacillus brevis ATCC 367]
AAATCGGTCTAGATCATTTA
>LVIS_0689(nagB) Score=5 Pos=-38 [Lactobacillus brevis ATCC 367]
CAATTGGACTATACCATTAG