# TF - RbsR2: SUB1312
>SUB1312(rbsR2) Score=6.7 Pos=-47 [Streptococcus uberis 0140J]
TAAAGAAAACGGTTACAATA
# TF - CmbR: SUB0728
>SUB1379(cysK) Score=5.1 Pos=-104 [Streptococcus uberis 0140J]
ATGATAAGCCTTTCCTATCAC
>SUB0365(gshT) Score=4.9 Pos=-93 [Streptococcus uberis 0140J]
GTGATAGAGAACTATTATCAT
>SUB0365(gshT) Score=4.2 Pos=-71 [Streptococcus uberis 0140J]
GCGATAGTGAATCACTATTAG
>SUB1416(tcyA) Score=4.2 Pos=-76 [Streptococcus uberis 0140J]
TTGATAGAAAAATGGTATTAT
>SUB1415(tcyB) Score=4.8 Pos=-80 [Streptococcus uberis 0140J]
GTGATAGGCTTTAACTATTGC
>SUB1416(tcyA) Score=4.5 Pos=-98 [Streptococcus uberis 0140J]
GTCATATAAATAGCTAATTAC
# RNA - L10_leader
>SUB0777(rplJ) Score=80.8 Pos=-162 [Streptococcus uberis 0140J]
GTTTTGAAAAAAACTGACCTAAGACAGTAGGGGAGCAATGCTCGTAATATTCCTACCGAGGCACAAAACGTCATTAAAGAAATAACGTATTTGTACTTTCGTGTCTAGGTTTAGGTGCGTTTTTTTTGTACCTAACC
# RNA - TPP
>SUB0597(thiT) Score=68.6 Pos=-150 [Streptococcus uberis 0140J]
ATATTTCACAAAGGAGTGCTTCCGCTGAGATCGCATTTGCGAAATCCTAAATACCTGATCTTGTTAATACAAGCGTAGGGATTGTGATCTTGATATTC
# RNA - FMN
>SUB0410(ribU) Score=121.2 Pos=-201 [Streptococcus uberis 0140J]
AGTGTCTTCAGGGCAGGGTGAAATTCCCGACCGGCGGTGACTAGTCAACTAGAAGTCCGCGAGCGCAAGCTGATGTGGTGAAACTCCACAACCGACAGTAGAGTCTGGATGAGAGAAGACCGGGTT
# RNA - PyrR
>SUB1025(pyrF) Score=55.7 Pos=-153 [Streptococcus uberis 0140J]
AAATACCTTTAAACATGTCCAGAGAGGCAAAAAGGTTTACAAGTAGAAACAGGAGGACGGCATGTCACTCCTAACTTTCGTGTAACCTTGCTTCTTTGGAAGCAAGGTTTTTATTT
>SUB0731(pyrR) Score=69.2 Pos=-138 [Streptococcus uberis 0140J]
ATTCCTTTAAAACGGTCCCGTGAGGCTGTCAAGGAGACAATTCAAGACATAAGTGTACGCTTTTTGGTGTACGATTATTTTGTGAAATCTCCTTGTTTTCAAGGGGATTTTTTTTTGTAA
>SUB1164(SAG2058) Score=45.3 Pos=-177 [Streptococcus uberis 0140J]
ATACTGCTTTAAACCATGTCCCGTGAGGCATGAAAGTCACAAAGAAGAGAATAGTTGCTATCCTCTTATTTTCTGTAGCCTTTAAGACTCACGCCATGCGCTTGAGTCTTTTTTTGA
# RNA - Glycine
>SUB0988(glyP) Score=66.9 Pos=-211 [Streptococcus uberis 0140J]
GACGGACTTCTGGAGAGACCTTTTTAGGCGCCGAAGGGGCAAGGCAACTGTGCTCAATCTCTCAGGCAAAAGGACAGAAGGTAACAGAT
>SUB0988(glyP) Score=25.4 Pos=-291 [Streptococcus uberis 0140J]
GATACCACACAGGAGAAGAAAGTAATTTCGCCGAAGGAGTTAAACTCTCAGGTGTTCAGAAATGAACGGGACTGTTGGTGG
# RNA - L13_leader
>SUB0276(rplM) Score=53.6 Pos=-111 [Streptococcus uberis 0140J]
GTATTGTTTACCCCATTTGAAAGGCCCCGGAACCTTCCAAATACCCTTTGATGGGACGGAACACCCATCAACACTTGTAAACAAATATT
# RNA - L19_leader
>SUB0644(rplS) Score=24.3 Pos=-52 [Streptococcus uberis 0140J]
GGCTAATCCGCTGGGACAAGTACTTATGATTAGTAAGA
# RNA - L20_leader
>SUB0711(infC) Score=79.8 Pos=-138 [Streptococcus uberis 0140J]
GAGAAAAGTAGAAGTGAGAGCTTCTCGCCTTGCGACTTAGGTTGTCTGGCCCAACATGTCAAAATCCAATTTGGATATTTATGTGTGCGGGCTTGATTTATCAAGTCCGCTTTCGTTTTTCTCTAA
# RNA - L21_leader
>SUB0725(rplU) Score=49.5 Pos=-104 [Streptococcus uberis 0140J]
ATCCTGTGCAACCGCACGAAAATCGTTTAAGTAGAGAAATCTCACGATTCCAGGCGAGTCTTCACAGAGGGAA
# RNA - Purine
>SUB0866(xpt) Score=51.7 Pos=-178 [Streptococcus uberis 0140J]
CAAAAATTGAATAAACTACTTATTTATACTGTGAATTGGCGCAGTGTTTCTACAAGACACCGTAATGTCTAACAATAAGTAAGCTAAAAAGCTTGCT
# RNA - S15
>SUB0266(rpsO) Score=27.1 Pos=-60 [Streptococcus uberis 0140J]
TTCTTGGTTTTAGGAGTGCCAATCCTAGGACTCGGATTAAGCAAAAAAAGGAGAAAAATTATGGCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCTCAATATGCACGTCATGAAGG
# TF - Rex: SUB0845
>SUB1630(gap) Score=4.7 Pos=-78 [Streptococcus uberis 0140J]
AAGTTAATCTTTTCACAA
>SUB0877(noxE) Score=4.6 Pos=-170 [Streptococcus uberis 0140J]
TTGTGAATTTATGAACTA
>SUB0877(noxE) Score=4.7 Pos=-24 [Streptococcus uberis 0140J]
TTGTGAAAAGAGGAACAA
>SUB0330(fba) Score=4.4 Pos=-59 [Streptococcus uberis 0140J]
TTGTGCTAAAATGAACAA
>SUB0063(adhE) Score=5.5 Pos=-38 [Streptococcus uberis 0140J]
TTGTGAAACTTTTAACAA
>SUB0063(adhE) Score=5.2 Pos=-116 [Streptococcus uberis 0140J]
TTGAAAAAAAGTTCACAA
>SUB0655(eno) Score=4.3 Pos=-101 [Streptococcus uberis 0140J]
AAGTGAAATTTTTCATTA
>SUB0655(eno) Score=4.2 Pos=-52 [Streptococcus uberis 0140J]
TTGTGATATTATGGACAT
>SUB1629(pgk) Score=4.5 Pos=-96 [Streptococcus uberis 0140J]
TTGTGAAAAAAATAATTT
>SUB0063(adhE) Score=5.5 Pos=-93 [Streptococcus uberis 0140J]
TTGTGAAACTATTTACAA
>SUB0879(ldh) Score=4.3 Pos=-77 [Streptococcus uberis 0140J]
GTGACAAACTATTCACAA
>SUB1260(forT) Score=4.9 Pos=-29 [Streptococcus uberis 0140J]
TTGTGAAAATGATAACTA
>SUB0605(tpi) Score=5.2 Pos=-98 [Streptococcus uberis 0140J]
TTGTGAAAATTATCCCAA
>SUB0845(rex) Score=4.4 Pos=-52 [Streptococcus uberis 0140J]
TTGTTACAATAGTAACAT
# RNA - preQ1-II
>SUB0657(queT) Score=83.2 Pos=-113 [Streptococcus uberis 0140J]
ATGCTACAATAATAAAGTTGCTTAGCAACCCTTGGTGCTTAGTTCCCTTTCGCCAAGCATATTACAAACGGCATCAATCATTTTCAATTGATGTATCGTTAAAGGAGAAAAAAATGAA
# RNA - yybP-ykoY
>SUB0614(atcL) Score=66.9 Pos=-155 [Streptococcus uberis 0140J]
TAACTATATCAAGGGAGTAGCAGACGGGTTTACCCGTGATTGTATCGTCACTACGGAATTTCGATTTCCGGTGCAATCTGAAACAGCGAGACTTGTTTAACTAAATT
# RNA - T-box(Ala)
>SUB1230(alaS) Score=41.9 Pos=-253 [Streptococcus uberis 0140J]
TAAGTTAGTTAAGAATTGTTTGTCAGGGATTGGATACAGAAAAATGACGGTTGCTGAAAGTCATGGAAAATCCGATAAACATGCTACTTAATTGTTACAATCGAAAATATGATAAAGATAATGACAAGTTCATTGAATAGAGGTGGTACCGCGGTTTTCGCCCTCTGT
# RNA - T-box(Gly)
>SUB1436(glyQ) Score=53.6 Pos=-366 [Streptococcus uberis 0140J]
TAAAATGGGTTTCAGAAAGAAGTTCATTTCTCTTTTACAGAAGCGAGTTCAGGATGGTGAAAGCTGAGCGTAGAAATTAATGAATAAGGCACTTTCCTATATATCTTTATGAAATAATAACGAAGTCATAAACTAGGGTGGAACCGCGTCTCTACGCCCCTATA
# RNA - T-box(Ile)
>SUB1284(ileS) Score=76.6 Pos=-259 [Streptococcus uberis 0140J]
AAAATAAGAAAAACACAATAGTCATTCTATAAATACAGCAAGTAGGTGATGATGAGAGGCCTACATTCCCTGGGATGATATATTATCATTTTCTAGCATTCTAACTGAAACGATTCATTAAGTTAGAAGGTTAGTCCACCTTACGGACGAAGAGGGAATAATAGTGATTATTATTCTAAACAAAGGTGGTACCACGAGCTTTCGTCCTTTTT
# RNA - T-box(Phe)
>SUB0678(pheS) Score=53.4 Pos=-220 [Streptococcus uberis 0140J]
AGTCAGCAAGACTAGTAATTACAGGGAAATCACCAGGGATTGAGGGCCATAGACTGAAAGCCTTCTTGATGAAAGTGTAATGAATTCACTTGCCAAATGACTGTTAATTAAGGTCTGATAAGTCAGATAAAAACGGATGGTACCGCGTGTCAACGCTCCGATATA
# RNA - T-box(Ser)
>SUB1489(serS) Score=69.3 Pos=-207 [Streptococcus uberis 0140J]
TAACATATCGGATAAGTAATATTACCTTTCTTTTCAGAAAGTCTGTGGTTGCTGAAAACAGATAGGAATGGAATATGAAATTCTACCGATTGATACAATTGGATACGAATCAAGTGCACAGATTGTGAAGCTGGATGGAACCGCGCTATTGCGCTCCAGCATA
# RNA - T-box(Thr)
>SUB0540(thrS) Score=68 Pos=-260 [Streptococcus uberis 0140J]
AATAACAAAGAAGACATGTTAGTTTAGAAACATCTATTGGAGCGAGTGCTGGTTGGTGGAAAGAGCACAAGATGACTATGCTAATACTCCTTCCCATGATTTTATGCAAACATAAAAGGGTGGTTCCCTTATCGCCAATCAGAGGTCCTTGGCTTTTTTAGCATGGACAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTGAG
# RNA - T-box(Trp)
>SUB1863(trpS) Score=98.3 Pos=-272 [Streptococcus uberis 0140J]
TAAAATAATTTTGAATTAGATGAGTAACTTTTTAACTATTTTTAGAGAGCTAATGGTTGCTGAAAATTAGCAGTAGAAAAAGTGAAATGGGCTAATGTTTCGTGAGAGGAACCAATAACTCTCAGGTTTTGTGCACCTTATCGTACAACTTCTTGTTAGAGAAGATGAGATAATATCTAGTATGATATTAATTTGAGGTGGCACCGCGTCATTGAGTAATAACGCCCTCACG
# RNA - T-box(Val)
>SUB1345 Score=43.8 Pos=-221 [Streptococcus uberis 0140J]
TTAGAATAACAGTAATCAGAGTCCTAATGAGTTTGTCTGTTACAGGAAGCGGCAGTACTGAGAAACCCGCACAGATGTCAAAAGGTGTTGCTGAGGTTTACAATTGAATTGAAAAAGATGCACATATCAATGGATATGTGAATTTGGGTGGTACCGCGGATAAGCATATTCGTCCCTGTC
# TF - NiaR: SUB1262
>SUB1261(niaX) Score=6.3 Pos=-58 [Streptococcus uberis 0140J]
TACAGGTGTCTTGACACCTGTA
# TF - NagR: SUB0893
>SUB1239(nagB) Score=5.6 Pos=-31 [Streptococcus uberis 0140J]
TAAAAGGTCTATACCAATAA
>SUB1239(nagB) Score=6.5 Pos=-60 [Streptococcus uberis 0140J]
AAATTGGTATATACCATATA
>SUB0998(glmS) Score=5.5 Pos=-67 [Streptococcus uberis 0140J]
TTATTTGACTATACCAATTT
>SUB0998(glmS) Score=5.8 Pos=-145 [Streptococcus uberis 0140J]
AAATTAGACTATACCAATAA
>SUB1443(nagA) Score=6.2 Pos=-67 [Streptococcus uberis 0140J]
AAACTGGTATATACCATTTA
# TF - NanR: SUB1650
>SUB1658(nanE) Score=5.1 Pos=-108 [Streptococcus uberis 0140J]
TTTGAAAGTATTATCTAA
>SUB1658(nanE) Score=6 Pos=-147 [Streptococcus uberis 0140J]
TCTGAAAATAGTTTCAGA
# TF - NrdR: SUB0381
>SUB1224(ndrH) Score=5.3 Pos=-129 [Streptococcus uberis 0140J]
ACACAATATATAGTGA
>SUB1224(ndrH) Score=4.7 Pos=-97 [Streptococcus uberis 0140J]
CCCCAAAATATTGTGT
>SUB1772(nrdD) Score=5.7 Pos=-94 [Streptococcus uberis 0140J]
AATCAATATATTGTGT
>SUB1772(nrdD) Score=5.6 Pos=-62 [Streptococcus uberis 0140J]
ACACAAGATATTGATT
# TF - MalR: SUB0235, SUB1142
>SUB1143(malE) Score=6.2 Pos=-55 [Streptococcus uberis 0140J]
TTCTGCAAACGGTTGCATAA
>SUB1142(malR) Score=6 Pos=-161 [Streptococcus uberis 0140J]
TTATGCAACCGTTTGCAGAA
>SUB1141(malM) Score=6.4 Pos=-56 [Streptococcus uberis 0140J]
TTACGCAAACGGTTGCGTTA
>SUB0236(ptsG) Score=6.4 Pos=-70 [Streptococcus uberis 0140J]
AAACGCAAACGTTTGCGTAA
# TF - CopR: SUB1464
>SUB1464(copR) Score=6.1 Pos=-34 [Streptococcus uberis 0140J]
ATATTTACAAATGTAAACAA
>SUB1464(copR) Score=5.9 Pos=-66 [Streptococcus uberis 0140J]
ATATTTACAATTGTAGATAT
# TF - ArgR: SUB1330, SUB1788, SUB1272
>SUB1789(argS) Score=4.7 Pos=-269 [Streptococcus uberis 0140J]
ATTGTATAATTATCCTCT
>SUB0638(artP) Score=4.9 Pos=-80 [Streptococcus uberis 0140J]
TAGGTATAATTATTCATT
>SUB0638(artP) Score=4.7 Pos=-50 [Streptococcus uberis 0140J]
ATTGAATAATTATGTTAT
>SUB0688(artP) Score=4.6 Pos=-57 [Streptococcus uberis 0140J]
ACGGTATAAAAATACATT
>SUB0688(artP) Score=4.7 Pos=-16 [Streptococcus uberis 0140J]
GGAGAATAAATATTCTAT
>SUB1328(arcA) Score=4.5 Pos=-233 [Streptococcus uberis 0140J]
AATTTATAACTATAAATT
>SUB1328(arcA) Score=4.4 Pos=-174 [Streptococcus uberis 0140J]
TTTTTATAAAGATGCATT
>SUB1327(arcB) Score=4.4 Pos=-103 [Streptococcus uberis 0140J]
AATGAATACATTTGAAAT
>SUB1669(argG) Score=4.8 Pos=-85 [Streptococcus uberis 0140J]
TTAGAATAAAAATACCAA
>SUB1669(argG) Score=5.6 Pos=-159 [Streptococcus uberis 0140J]
TAAGAATAAATATACATA
>SUB1669(argG) Score=4.5 Pos=-56 [Streptococcus uberis 0140J]
TTTAAATAATTATACGTT
>SUB1788(argR1) Score=5.7 Pos=-32 [Streptococcus uberis 0140J]
AGAGGATAATTATACAAT
# TF - GlnR: SUB1627
>SUB1627(glnR) Score=5.8 Pos=-76 [Streptococcus uberis 0140J]
ATGTCAGAAAATGTGACAT
>SUB1152(glnP) Score=6.2 Pos=-91 [Streptococcus uberis 0140J]
ATGTTATATTTTCTAACAT
>SUB0551(gluQ) Score=5.7 Pos=-40 [Streptococcus uberis 0140J]
GTGTCAGAAAACCTAACAT
# TF - NmlR: SUB1075
>SUB1076(adhC) Score=6.9 Pos=-57 [Streptococcus uberis 0140J]
GCTTGACTTGAAGTTAACT
>SUB0101(adhC) Score=5.8 Pos=-92 [Streptococcus uberis 0140J]
ACTTGACTTAGAGCCCACT
# TF - FabT: SUB1501
>SUB1502(fabM) Score=5.5 Pos=-70 [Streptococcus uberis 0140J]
AATTTGATAATCAAACC
>SUB1498(fabK) Score=6.2 Pos=-44 [Streptococcus uberis 0140J]
AGTTTGATTATCAAATT
>SUB1501(fabT) Score=6 Pos=-38 [Streptococcus uberis 0140J]
AATTTGACAGTCAAAGT
# TF - ScrR: SUB1545
>SUB1543(scrA) Score=6.8 Pos=-96 [Streptococcus uberis 0140J]
TATGTCAAACGCTTGACATA
>SUB1544(scrB) Score=6.8 Pos=-108 [Streptococcus uberis 0140J]
TATGTCAAGCGTTTGACATA
# TF - CcpA: SUB0536
>SUB1250(rheA) Score=4.5 Pos=-70 [Streptococcus uberis 0140J]
ATAAAAACCTTTTCAT
>SUB1199(SDEG_1360) Score=4.6 Pos=-74 [Streptococcus uberis 0140J]
TTGACAGCGATTTCAT
>SUB0666(atpE) Score=4.4 Pos=-94 [Streptococcus uberis 0140J]
AAGAAAGCGTAATCAA
>SUB1650(nanR) Score=4 Pos=-28 [Streptococcus uberis 0140J]
TTGATAGGGCTTACAG
>SUB1658(nanE) Score=4.9 Pos=-76 [Streptococcus uberis 0140J]
TTGAAAACGCTTTATT
>SUB1260(fdhC) Score=4 Pos=-78 [Streptococcus uberis 0140J]
ATGGAAGGGCTTGCAT
>SUB1738(pepD2) Score=4.1 Pos=-32 [Streptococcus uberis 0140J]
TTGGAAGCGCCTACAT
>SUB1312(rbsR) Score=4.8 Pos=-45 [Streptococcus uberis 0140J]
AAGAAAACGGTTACAA
>SUB1705(sorD) Score=4.8 Pos=-48 [Streptococcus uberis 0140J]
TTGTAAGCGTTTTATA
>SUB1204(eda2) Score=4.5 Pos=-30 [Streptococcus uberis 0140J]
AAGATAACGGTTTCAA
>SUB1143(malE) Score=3.9 Pos=-53 [Streptococcus uberis 0140J]
CTGCAAACGGTTGCAT
>SUB0042(bgaC) Score=4.8 Pos=-34 [Streptococcus uberis 0140J]
TTGTAAACGGTTACAA
>SUB0543(dhaK) Score=4.1 Pos=-32 [Streptococcus uberis 0140J]
CTGAAAGCGTAAACAA
>SUB0869(xylH) Score=4.4 Pos=-75 [Streptococcus uberis 0140J]
ATAATAGCGGTTTCAA
>SUB0877(naoX) Score=4.5 Pos=-72 [Streptococcus uberis 0140J]
TTGGAAGCGTTTTATT
>SUB1058(gabD) Score=4.3 Pos=-56 [Streptococcus uberis 0140J]
TTGAAATCGTTACCAA
>SUB1573(glpF2) Score=4.7 Pos=-101 [Streptococcus uberis 0140J]
AAGTAAACGTTTTTAT
>SUB1574(pepX) Score=4.7 Pos=-37 [Streptococcus uberis 0140J]
ATAAAAACGTTTACTT
>SUB0687(aat) Score=4.1 Pos=-176 [Streptococcus uberis 0140J]
TTGAAAGCTATTTAAT
>SUB0417(pflA) Score=4 Pos=-33 [Streptococcus uberis 0140J]
GTAAAAACGGTTACAA
>SUB0955(coaA) Score=4.4 Pos=-219 [Streptococcus uberis 0140J]
TTGAAATGGTTTACAA
>SUB1223(ptsH) Score=3.9 Pos=-60 [Streptococcus uberis 0140J]
TTGTAAGGGTTACCAT
>SUB1223(ptsH) Score=3.8 Pos=-137 [Streptococcus uberis 0140J]
AAGAAAACATTTCAAA
>SUB0748(fruR) Score=4.4 Pos=-60 [Streptococcus uberis 0140J]
TTGTAACCGATTTCAG
>SUB0946(pgm) Score=4.5 Pos=-34 [Streptococcus uberis 0140J]
ATGAAAGCGGTTAATA
>SUB1394(atoB) Score=5.1 Pos=-40 [Streptococcus uberis 0140J]
AAGAAAGCGCTTTCTA
>SUB1460(gatA) Score=4.3 Pos=-75 [Streptococcus uberis 0140J]
TTGCAAACGATTACTA
>SUB0135(sacC) Score=4.1 Pos=-185 [Streptococcus uberis 0140J]
TAATAAACGATTTAAT
>SUB0135(sacC) Score=4.2 Pos=-75 [Streptococcus uberis 0140J]
GTGATAACGTTTTCTT
>SUB1529(aspC) Score=4.5 Pos=-122 [Streptococcus uberis 0140J]
ATGAAAGCGGTTAATA
>SUB1103(acoA) Score=4.6 Pos=-80 [Streptococcus uberis 0140J]
TAGAAAGCGGTTTTAA
>SUB1533(yscN) Score=4.3 Pos=-59 [Streptococcus uberis 0140J]
CGGAAATCGTTTTCAA
>SUB1427(tkt) Score=3.9 Pos=-46 [Streptococcus uberis 0140J]
CGGAAAACGTTTAATT
>SUB1427(tkt) Score=3.9 Pos=-103 [Streptococcus uberis 0140J]
TAAAAAAGGATTTCTA
>SUB0661(glgB) Score=4.3 Pos=-144 [Streptococcus uberis 0140J]
TGATAAGCGTTTTCAA
>SUB0535(pepQ) Score=4.5 Pos=-115 [Streptococcus uberis 0140J]
TTGAAACCACTTTCAA
>SUB1763(treP) Score=4.3 Pos=-118 [Streptococcus uberis 0140J]
TTGGAATCGATTACAA
>SUB1296(typA) Score=4.3 Pos=-94 [Streptococcus uberis 0140J]
CTGAAAACATTTACAA
>SUB1001(pfk) Score=4.1 Pos=-36 [Streptococcus uberis 0140J]
ATTAAAACGTTAAATT
>SUB1329(arcR) Score=4.4 Pos=-71 [Streptococcus uberis 0140J]
TTAGAAACGCTTACAA
>SUB1328(arcA) Score=4.5 Pos=-189 [Streptococcus uberis 0140J]
AAGTAAACGTATACAT
>SUB0993(phnA) Score=4.2 Pos=-88 [Streptococcus uberis 0140J]
CTGATAACGCATTCAT
>SUB1727(sgaT) Score=4.5 Pos=-76 [Streptococcus uberis 0140J]
TTTAAAACGCTTTCAC
>SUB0907(yieF) Score=4.1 Pos=-72 [Streptococcus uberis 0140J]
ATGAAAACAGTTGCAT
>SUB0907(yieF) Score=4.3 Pos=-126 [Streptococcus uberis 0140J]
AAGAAAACGCAAACAT
>SUB1370(SUB1370) Score=4.6 Pos=-95 [Streptococcus uberis 0140J]
CTGAAAGCGCTTGCAA
>SUB0126(ackA) Score=4.6 Pos=-28 [Streptococcus uberis 0140J]
CAGAAAACGATTTCAA
>SUB1375(raiA) Score=4.4 Pos=-59 [Streptococcus uberis 0140J]
ATGAAAACGGTATAAT
>SUB0536(ccpA) Score=4.5 Pos=-72 [Streptococcus uberis 0140J]
TTGAAAGTGGTTTCAA
>SUB1764(treR) Score=4.3 Pos=-117 [Streptococcus uberis 0140J]
TTGTAATCGATTCCAA
>SUB0236(ptsG) Score=4.3 Pos=-120 [Streptococcus uberis 0140J]
TAGAAAACGCTTTACA
>SUB0619(fbp) Score=4.4 Pos=-109 [Streptococcus uberis 0140J]
TTGTTTGCGCTTTCAT
>SUB0041(manR) Score=4.8 Pos=-118 [Streptococcus uberis 0140J]
TTGTAACCGTTTACAA
>SUB0338(SPy0278) Score=4.7 Pos=-64 [Streptococcus uberis 0140J]
AAGATAGCGTTTTCTT
>SUB0997(mtlA) Score=4.3 Pos=-54 [Streptococcus uberis 0140J]
ATGTCAGCGTTTCCAT
>SUB1263(gpmA) Score=4.6 Pos=-133 [Streptococcus uberis 0140J]
TTTGAAACGCTTTCAT
>SUB1461(lacR2) Score=4.3 Pos=-156 [Streptococcus uberis 0140J]
TAGTAATCGTTTGCAA
>SUB1752(ahpC) Score=4.3 Pos=-80 [Streptococcus uberis 0140J]
AATCAAGCGCTTTCTT
>SUB1433(glpK) Score=4.3 Pos=-30 [Streptococcus uberis 0140J]
AAGAAACCGCTTACCT
>SUB1482(manL) Score=5 Pos=-130 [Streptococcus uberis 0140J]
TTGAAAACGTTTTAAA
>SUB0529(celB) Score=4.2 Pos=-65 [Streptococcus uberis 0140J]
TTGAAAGCGTATACAC
>SUB1583(pck) Score=4.2 Pos=-56 [Streptococcus uberis 0140J]
TGGTAAGCGTTTTCCT
>SUB0797(lacT) Score=4.2 Pos=-182 [Streptococcus uberis 0140J]
CAGAAAGGGTTTACAA
>SUB0235(malR) Score=3.9 Pos=-85 [Streptococcus uberis 0140J]
TTGAAAAGGGATTCTT
>SUB0304(susT1) Score=4.6 Pos=-149 [Streptococcus uberis 0140J]
CAGAAAGCGCTATCAA
# TF - PflR: SUB0157
>SUB0156(pflA) Score=5.9 Pos=-61 [Streptococcus uberis 0140J]
ACGTAATTGATTTATTTACGT
>SUB0160(pflB) Score=5.3 Pos=-42 [Streptococcus uberis 0140J]
AAGAAACAAAAATGTTTACGA
>SUB0157(pflR) Score=6 Pos=-86 [Streptococcus uberis 0140J]
ACGTAAATAAATCAATTACGT
# TF - PipR: SUB1816
>SUB1815(pip) Score=5.9 Pos=-111 [Streptococcus uberis 0140J]
ATTAGACAATGTGTCTAAA
>SUB1815(pip) Score=4.8 Pos=-32 [Streptococcus uberis 0140J]
TTTATAAAGAATGTCCATT
>SUB1816(pipR) Score=4.8 Pos=-117 [Streptococcus uberis 0140J]
AATGGACATTCTTTATAAA
>SUB1816(pipR) Score=5.9 Pos=-38 [Streptococcus uberis 0140J]
TTTAGACACATTGTCTAAT
# TF - SgaR: SUB1721
>SUB1720(sgaG) Score=5.3 Pos=-92 [Streptococcus uberis 0140J]
AACACTTACATGTGTG
>SUB1727(sgaT) Score=5.5 Pos=-105 [Streptococcus uberis 0140J]
AACACAGAACTGTGTG
# TF - MtaR: SUB1044
>SUB0314(COG1912) Score=6.3 Pos=-106 [Streptococcus uberis 0140J]
TATAGTTTTAGACTATA
>SUB0942(fhs) Score=4.6 Pos=-129 [Streptococcus uberis 0140J]
TAAAGATATACACTATA
>SUB0366(metQ) Score=6.3 Pos=-101 [Streptococcus uberis 0140J]
TATAGTTTTAAGCTATA
# TF - CcpN: SUB1521
>SUB1521(yqfL) Score=5.9 Pos=-44 [Streptococcus uberis 0140J]
ATATAATATACTATATAATAA
# TF - YjdR: SUB1690
>SUB1690(yjdR) Score=6.5 Pos=-51 [Streptococcus uberis 0140J]
ATAGTTCTCTTAAGAACTAA
>SUB1642(yjdE) Score=6 Pos=-87 [Streptococcus uberis 0140J]
ATAGTTCTCAGGGTAACTAT
>SUB1690(yjdR) Score=5.9 Pos=-30 [Streptococcus uberis 0140J]
ATGGTTTTCACGAGAACTAA
# TF - PerR: SUB1714
>SUB1412(trxB) Score=4.8 Pos=-73 [Streptococcus uberis 0140J]
TTAAAATCATAATAA
>SUB1752(ahpC) Score=5.8 Pos=-142 [Streptococcus uberis 0140J]
TTAGAATTATTCTAA
>SUBp03(mntR) Score=5.6 Pos=-37 [Streptococcus uberis 0140J]
TAATAATGATTATAA
>SUB1266(pmtA) Score=5.8 Pos=-98 [Streptococcus uberis 0140J]
TTAGAATTATTCTAA
>SUB0424(fhuA) Score=4.5 Pos=-133 [Streptococcus uberis 0140J]
TTTTAACCATTCTAA
>SUB1266(pmtA) Score=5.4 Pos=-65 [Streptococcus uberis 0140J]
TTAGAATAGTTATAA
>SUB0473(mntA) Score=5.6 Pos=-123 [Streptococcus uberis 0140J]
TTATAATCATTATTA
# TF - SPy1285: SUB1003
>SUB1003(SPy1285) Score=6.5 Pos=-54 [Streptococcus uberis 0140J]
CTGTACCATTTAAATAGTACAA
>SUB1426(SAG0279) Score=5.7 Pos=-34 [Streptococcus uberis 0140J]
TTGTATTAGATTAAAAGTACAA
>SUB0736(SPy0836) Score=6.5 Pos=-37 [Streptococcus uberis 0140J]
TTGTCTTATATTAATAATACAA
# TF - AdcR: SUB0110
>SUB0634(adcA) Score=5.1 Pos=-43 [Streptococcus uberis 0140J]
ACTTAACCAGTGAACT
>SUB0884(lmb) Score=5.6 Pos=-40 [Streptococcus uberis 0140J]
ACTTAACTGGTTAAGT
>SUB1212(inlA) Score=5.9 Pos=-33 [Streptococcus uberis 0140J]
AATTAACTAGTTAACA
>SUB0207(cspZ) Score=5.6 Pos=-42 [Streptococcus uberis 0140J]
ACTTAACTGGTTAAGT
>SUB0110(adcR) Score=5.9 Pos=-30 [Streptococcus uberis 0140J]
AATTAACTGGTTAAGA
# TF - MntR: SUBp03
>SUB0473(mntA) Score=4.9 Pos=-32 [Streptococcus uberis 0140J]
TTAATTATATAATATAAATTAA
>SUB0473(mntA) Score=6.1 Pos=-50 [Streptococcus uberis 0140J]
ATAATTAACCATACTTAATTAA
>SUBp03(mntR) Score=5.9 Pos=-117 [Streptococcus uberis 0140J]
TTAATTAAGTATGGTTAATTAT
>SUB1266(SPy1434) Score=5.3 Pos=-54 [Streptococcus uberis 0140J]
ATAATTAAGATGAATTAAATTG
>SUB0826(prtA) Score=5.7 Pos=-83 [Streptococcus uberis 0140J]
ATTATTAAGTATACTTAATAAT
# TF - PurR: SUB1636
>SUB1636(purR) Score=4.2 Pos=-88 [Streptococcus uberis 0140J]
AAAGATGAACAAT
>SUB0025(purC) Score=5.2 Pos=-108 [Streptococcus uberis 0140J]
AAAAACGAACATT
>SUB0025(purC) Score=4.7 Pos=-15 [Streptococcus uberis 0140J]
AAAGGCGAACAAT
>SUB0865(guaC) Score=4.6 Pos=-187 [Streptococcus uberis 0140J]
AAATCCGAACAAA
>SUB1480(pbuO) Score=4.9 Pos=-166 [Streptococcus uberis 0140J]
AAAAGCGAACGTT
>SUB0053(purD) Score=4 Pos=-57 [Streptococcus uberis 0140J]
ATTCACGAACAAA
# TF - TreR: SUB1764
>SUB1764(treR) Score=5.9 Pos=-104 [Streptococcus uberis 0140J]
CAAATTTGTAGGCAAGTTGT
>SUB1763(treP) Score=5.9 Pos=-135 [Streptococcus uberis 0140J]
ACAACTTGCCTACAAATTTG
# TF - HrcA: SUB1506
>SUB1742(groS) Score=7.5 Pos=-63 [Streptococcus uberis 0140J]
TTGGCACTCTTTTTTAAAGAGTGCTAA
>SUB1281(clpL) Score=6 Pos=-140 [Streptococcus uberis 0140J]
TTATCACTCTAAGTCACTAAGTGCTAA
>SUB1506(hrcA) Score=7.1 Pos=-45 [Streptococcus uberis 0140J]
TTAGCAGTCTTAGCATCAGAGTGCTAA
# RNA - THF
>SUB1256(folT) Score=72.4 Pos=-129 [Streptococcus uberis 0140J]
ACAGAGTAGATGGTTTGCGTTAAGTGTATGTGAATGGGATGTCGTCACATAACGAAGCTTATTGCGCGGTAAATCATCGCATCCGCTGTTAA
# TF - BirA: SUB1213
>SUB1710(yemC) Score=7.9 Pos=-61 [Streptococcus uberis 0140J]
TTTGTTACC----------------GTTGACACA
# TF - BfrR: SUB0303
>SUB0304(bfrF) Score=6.5 Pos=-31 [Streptococcus uberis 0140J]
AAAATGAAACGTTTCAAAAA
>SUB0304(bfrF) Score=6.5 Pos=-85 [Streptococcus uberis 0140J]
AAAATGAAACGTTTCAAATA
# TF - GutR: SUB1704
>SUB1705(gutF) Score=9 Pos=-72 [Streptococcus uberis 0140J]
AAAAAAG-----CTTAATT
# TF - SAG1910: SUB0258
>SUB0259(SDEG_0249) Score=5.6 Pos=-101 [Streptococcus uberis 0140J]
CATTACTAATTAGTAATA
>SUB0259(SDEG_0249) Score=5.4 Pos=-79 [Streptococcus uberis 0140J]
AATAACTACATAGTATTA
>SUB0259(SDEG_0249) Score=5.5 Pos=-58 [Streptococcus uberis 0140J]
AATCACTATATAGTGACT
>SUB0258(SAG1910) Score=5.7 Pos=-46 [Streptococcus uberis 0140J]
TATCACTAACTAGTTATA
# TF - CelR: SUB0530
>SUB0529(celB) Score=4.8 Pos=-141 [Streptococcus uberis 0140J]
TTGCTTTTTTAATAGGGAAA
>SUB0529(celB) Score=6 Pos=-100 [Streptococcus uberis 0140J]
TTTCCGCATCATTACGGAAA
# TF - MtlR: SUB0996
>SUB0997(mtlA) Score=6.7 Pos=-89 [Streptococcus uberis 0140J]
TGTGTCACAGCTTTTGTGCCAAA
# TF - SgaR2: SUB1761
>SUB1761(sgaR2) Score=5.5 Pos=-70 [Streptococcus uberis 0140J]
AAATTGTGCTCAAATA
# TF - CodY: SUB1528
>SUB1528(codY) Score=5.6 Pos=-82 [Streptococcus uberis 0140J]
AATTTTCTGATAATT
>SUB1220(gapN) Score=5.4 Pos=-87 [Streptococcus uberis 0140J]
AATTTTCAGACAATT
>SUB1625(oppA1) Score=5.2 Pos=-88 [Streptococcus uberis 0140J]
AATTTTCAGATAAAT
>SUB0762(gdhA) Score=5.6 Pos=-60 [Streptococcus uberis 0140J]
AATATTCTGAAAATT
>SUB1010(ilvE) Score=4.8 Pos=-88 [Streptococcus uberis 0140J]
AATATTCCGAATATT
>SUB0445(serC) Score=5.3 Pos=-53 [Streptococcus uberis 0140J]
AAAATTCTGAAAATT
>SUB0115(rpoB) Score=4.6 Pos=-90 [Streptococcus uberis 0140J]
AAGATTCTAAAAATT
>SUB0316(thrA) Score=5 Pos=-26 [Streptococcus uberis 0140J]
AATATTCATAAAATT
>SUB0432(livK) Score=5.6 Pos=-66 [Streptococcus uberis 0140J]
AATTTTCTGATAATT
>SUB0939(asd) Score=5.5 Pos=-54 [Streptococcus uberis 0140J]
AATTTTTAGAAAATT
>SUB1411(aapA) Score=4.8 Pos=-54 [Streptococcus uberis 0140J]
AATATTCTGAAAAAA
>SUB1323(asnA) Score=4.6 Pos=-123 [Streptococcus uberis 0140J]
AATATACTGAAAAAT
>SUB0370(braB) Score=5.1 Pos=-43 [Streptococcus uberis 0140J]
AATTGTTAGAAAATT
>SUB0889(dtpT) Score=5 Pos=-92 [Streptococcus uberis 0140J]
AATTATCAGATATTT
>SUB0601(pepF) Score=4.8 Pos=-154 [Streptococcus uberis 0140J]
CTTTTTCTGAAAATT
>SUB0602(ppc) Score=4.8 Pos=-55 [Streptococcus uberis 0140J]
AATTTTCAGAAAAAG
>SUB1627(glnR) Score=5.1 Pos=-103 [Streptococcus uberis 0140J]
AATATTCAGAAAATA
# TF - FruR: SUB0748
>SUB0748(fruR) Score=5.9 Pos=-105 [Streptococcus uberis 0140J]
TGATAGATTGTGCTTGACTT
>SUB0748(fruR) Score=5.7 Pos=-115 [Streptococcus uberis 0140J]
TGAAAGAAAATGATAGATTG
# TF - CtsR: SUB1744
>SUB0429(clpP) Score=6.7 Pos=-98 [Streptococcus uberis 0140J]
TATTATTTGACCTTATTTGACCAA
>SUB0776(clpL) Score=6.9 Pos=-152 [Streptococcus uberis 0140J]
TTTTTCTTGACCTTTTTTGACCAA
>SUB1742(groS) Score=6.6 Pos=-108 [Streptococcus uberis 0140J]
TTTTTCTTGACTAATTTTGACCAA
>SUB1281(clpE) Score=6.7 Pos=-61 [Streptococcus uberis 0140J]
TAAAGTTTGACCATTTTTGACTAA
# TF - AgaR: SUB0041
>SUB0042(bgaC) Score=5.1 Pos=-103 [Streptococcus uberis 0140J]
AGAACTATTATAACAGAAAT
>SUB0041(agaR) Score=5.1 Pos=-53 [Streptococcus uberis 0140J]
ATTTCTGTTATAATAGTTCT
# TF - AgaR2: SUB0038
>SUB0038(agaR2) Score=5.8 Pos=-30 [Streptococcus uberis 0140J]
AAGTGTTTATAACCAGTT
# TF - LacR: SUB1461, SUB0792
>SUB1457(lacA) Score=8.3 Pos=-53 [Streptococcus uberis 0140J]
ACCAAACAA-AACAAACAC
>SUB0793(lacA) Score=9.3 Pos=-101 [Streptococcus uberis 0140J]
AACAAACAA-AATAAACAA
>SUB1460(gatA) Score=8.8 Pos=-155 [Streptococcus uberis 0140J]
AAATAACAA-AACAAACAA
>SUB1460(gatA) Score=8.8 Pos=-145 [Streptococcus uberis 0140J]
AACAAACAA-AAATAACAA
>SUB1461(lacR) Score=-1.7 Pos=-79 [Streptococcus uberis 0140J]
TTGTTTGTT-TTGTTATTT
>SUB1461(lacR) Score=-1.7 Pos=-89 [Streptococcus uberis 0140J]
TTGTTATTT-TTGTTTGTT
# TF - YwzG: SUB1811
>SUB1811(ywzG) Score=6.8 Pos=-35 [Streptococcus uberis 0140J]
TATATAAAATTTATATATA
>SUB1811(ywzG) Score=6.3 Pos=-108 [Streptococcus uberis 0140J]
TATATAATATTTTTACATA