# TF - NagR: OEOE_1727
>OEOE_1728(nagA) Score=4.4 Pos=-32 [Oenococcus oeni PSU-1]
TAATTGGGCTATACCAAACC
>OEOE_0644(nagB) Score=4.2 Pos=-84 [Oenococcus oeni PSU-1]
CAAAAAAACTATACCAATTT
>OEOE_0635(glmS) Score=5 Pos=-113 [Oenococcus oeni PSU-1]
TTAATGGCCTATACCAATGT
# TF - CcpA: OEOE_0684
>OEOE_0338(pts20B) Score=4.8 Pos=-70 [Oenococcus oeni PSU-1]
ATGAAAGCGTTTTAAG
>OEOE_0349(glpF2) Score=4.5 Pos=-82 [Oenococcus oeni PSU-1]
AATAAAACGTTTACAT
>OEOE_0349(glpF2) Score=4.3 Pos=-104 [Oenococcus oeni PSU-1]
TAGAAACCGCTTATTT
>OEOE_0636(pgi) Score=3.9 Pos=-118 [Oenococcus oeni PSU-1]
TTGGAAGCTATTCCAA
>OEOE_0527(adhA) Score=4.2 Pos=-229 [Oenococcus oeni PSU-1]
AAGTAAGCGCTTCCAC
>OEOE_1210(bglB) Score=4.5 Pos=-93 [Oenococcus oeni PSU-1]
ATGGTAGCGATTTCAT
>OEOE_0684(ccpA) Score=4.6 Pos=-59 [Oenococcus oeni PSU-1]
ATGTAATCGCTTGCAT
>OEOE_1611(rpiA) Score=4.7 Pos=-110 [Oenococcus oeni PSU-1]
TTGAAAGTGTTTTCAA
>OEOE_0249(pmi) Score=4.9 Pos=-30 [Oenococcus oeni PSU-1]
ATGATAACGCTTACAT
>OEOE_1204(fmpA) Score=4.6 Pos=-186 [Oenococcus oeni PSU-1]
ATGAATTCGTTTTCAA
>OEOE_1090(cad) Score=5.1 Pos=-101 [Oenococcus oeni PSU-1]
TTGAAAGCGTTTCCAA
>OEOE_1090(cad) Score=4.2 Pos=-237 [Oenococcus oeni PSU-1]
TTGACACCGGTTTTAT
>OEOE_1211(lhv_0924) Score=4 Pos=-115 [Oenococcus oeni PSU-1]
ATGTAAACTCTTTTTT
>OEOE_1211(lhv_0924) Score=4.4 Pos=-167 [Oenococcus oeni PSU-1]
ATGAAATCGCTACCAT
>OEOE_1669(LVIS_0439) Score=4.8 Pos=-58 [Oenococcus oeni PSU-1]
GAGAAAACGTTTTCAT
>OEOE_0647(ptsI) Score=4.5 Pos=-82 [Oenococcus oeni PSU-1]
TTGAAAACGATTTTTT
>OEOE_0647(ptsI) Score=4.7 Pos=-164 [Oenococcus oeni PSU-1]
TTGAAAACAGTTTCAA
>OEOE_1612(rbsK) Score=4.9 Pos=-19 [Oenococcus oeni PSU-1]
TTGAAAACACTTTCAA
>OEOE_0227(araB) Score=4.3 Pos=-218 [Oenococcus oeni PSU-1]
ATTTAAACGGTTTTAT
>OEOE_0227(araB) Score=4.4 Pos=-116 [Oenococcus oeni PSU-1]
GTGTAAGCACTTACAA
>OEOE_0327(lplA1) Score=5.1 Pos=-53 [Oenococcus oeni PSU-1]
TTGAAAGCGCTTACAG
>OEOE_1342(treP) Score=4.5 Pos=-96 [Oenococcus oeni PSU-1]
TTGAAAACGCTTTATG
>OEOE_1339(treR) Score=4.1 Pos=-122 [Oenococcus oeni PSU-1]
TTGAAAACGAAAACTT
>OEOE_1339(treR) Score=4.5 Pos=-66 [Oenococcus oeni PSU-1]
TGAAAAACGTTTTCAA
>OEOE_0041(malT2) Score=4.2 Pos=-124 [Oenococcus oeni PSU-1]
CAGTAAACGTTTACTA
>OEOE_0041(malT2) Score=4.6 Pos=-92 [Oenococcus oeni PSU-1]
TTGTAAACGTTTACTG
>OEOE_0041(malT2) Score=4.9 Pos=-57 [Oenococcus oeni PSU-1]
TTGTAAACGTTTACTT
>OEOE_1612(rbsK) Score=4.9 Pos=-19 [Oenococcus oeni PSU-1]
TTGAAAACACTTTCAA
>OEOE_0146(rbsR) Score=4.6 Pos=-45 [Oenococcus oeni PSU-1]
TTGTAAACGTTTTAAG
>OEOE_0042(malR3) Score=4.9 Pos=-147 [Oenococcus oeni PSU-1]
AAGTAAACGTTTACAA
>OEOE_0042(malR3) Score=4.4 Pos=-112 [Oenococcus oeni PSU-1]
CAGTAAACGTTTACAA
# TF - PurR: OEOE_1543
>OEOE_0535(guaC) Score=4.1 Pos=-176 [Oenococcus oeni PSU-1]
AAAAACTAACAAG
>OEOE_1138(purE) Score=5.3 Pos=-79 [Oenococcus oeni PSU-1]
AAAAACGAACGTT
>OEOE_1138(purE) Score=4.6 Pos=-130 [Oenococcus oeni PSU-1]
AAACACGAAATAT
# TF - AraR: OEOE_0226
>OEOE_0227(araK) Score=5 Pos=-149 [Oenococcus oeni PSU-1]
TGATTTATATGTACGAATGT
>OEOE_0227(araK) Score=5 Pos=-179 [Oenococcus oeni PSU-1]
AAATTCATACGTAAAACTAA
>OEOE_0227(araK) Score=4.5 Pos=-192 [Oenococcus oeni PSU-1]
TTATTTTTACAAAAAATTCA
# RNA - L10_leader
>OEOE_1417(rplJ) Score=38.3 Pos=-136 [Oenococcus oeni PSU-1]
AAAGTAAATATCGTTTTTACCTAAGACGTCGGTTGCCGTAAGGTGTAATTCCTGCCGAGGAAAGCTAAGCTTTTTTATGGCCGCGTCTATTGCGCGGTTTTCTTATGTGTAG
# RNA - TPP
>OEOE_1491(ykoE) Score=65 Pos=-251 [Oenococcus oeni PSU-1]
ACATCAAAATCTGGGGTGCCCAAGGGCTGAGACTATACCCACATAACCTGATCTAGTTCGTACTAGCGTAGGGAGATTACTTGAGAGATTT
>OEOE_0174(ykoE) Score=67.3 Pos=-151 [Oenococcus oeni PSU-1]
ATACTTCTATCTGGGGTGCCTTTACTTTTAAGGCTGAGATTTACCCATCGAACCTGTAGGTTAATACCTGCGTAGGGAGATAGCGAAAAGAGTCG
# RNA - FMN
>OEOE_1680(ribU) Score=117 Pos=-363 [Oenococcus oeni PSU-1]
AAATTCTTCGGGGCAGGGTGTGATTCCCAACCGACGGTAACAACATTTTGTTGAAGTCCGTGACCCGCGCAAGCGGTTGACCCAGTGAAACTCTGGGACCGACAGTATAGTCTGGATGGGAGAAGAAATAGAC
# RNA - L20_leader
>OEOE_1280(infC) Score=29.5 Pos=-85 [Oenococcus oeni PSU-1]
TTGAATTAAGTAGAGGTTCCCGCCTCTCGCCGCATGTGCAAGACCATGTTGGCTTATCATTCTTTTTGAGGCGGGTTTTGCATGTTTGCATGACTCGCTTTTTCCAACCA
# RNA - L21_leader
>OEOE_0957(rplU) Score=38.8 Pos=-75 [Oenococcus oeni PSU-1]
CAATGCTTCAACCACTCTAAAGCGGTTTTTAAGTGATTTATCACACCGCCACGGTGAGTCTAAGAGGAGGCCT
# RNA - Lysine
>OEOE_0751(lysX) Score=85.9 Pos=-246 [Oenococcus oeni PSU-1]
GCAATAAAATAGAGGCGCGATCATCACAAAAACTGCTGAGTGTGTATTCACGATGAAGCAGTCCTAAGGGTTATCGCCGAAACGAGATTATAAATGCATATAATCTTTGTTGGGACATGTGGAAAAACCGCATGGACTGTCTCGGTCAATCCGGGGAGTGCTATTAATTGG
>OEOE_0771(lysA) Score=82.5 Pos=-226 [Oenococcus oeni PSU-1]
TCCGTAATAGAGGTGCAAATGACATCATTAGTTTATTAGATAGTCCCTGCTAGGATCTAATAAATGAAAGGGGATTTTGCCGAAATCGATTGTATGAGCAGATACTTATCGATTGAGTCGTGGTTTAATAAATCACGGATTGTCACAGAGATGTGGAGTGCTAGGACGGACAA
# RNA - Purine
>OEOE_0537(xpt) Score=57.6 Pos=-136 [Oenococcus oeni PSU-1]
AATTCAGAATGTTGAAAAAGCTTATATATGGTCGTAATAAGGATGACCGTTTCTACCCGGAGCCACAAACTCAGGACTATAAGCAATTAAGTACTTGTG
>OEOE_1127(guaB) Score=45.1 Pos=-161 [Oenococcus oeni PSU-1]
TAAGATAAATAGCAACCAAGCAGGTATATCGTCGGATAATGGCTGACAGTTTCTACCCAACACCAATGTTGGACTATCTGTGGATGTCTTTTTGGC
# RNA - S15
>OEOE_1283(rpsO) Score=22.8 Pos=-62 [Oenococcus oeni PSU-1]
CTTTTCGCGAACCTACCTTTTACGAATCGCTCGGTAATTGGAAATTTTGAGGAGGTAAAATCATGGCTTTAACTCAAGAAGCAAAGAACCAGATTATTAAAGAATATGCTCGCCATAATGG
# RNA - SAM
>OEOE_0838(metK) Score=32.4 Pos=-144 [Oenococcus oeni PSU-1]
ACCTATTCAGAGCGTAATGAGGGATACCACCCGATGAGCTACCGGCAACCTGCTTTTTTGCAAGGTGCCCCAGTGGTAAGCGATGGGTCTA
# TF - Rex: OEOE_1398
>OEOE_0693(butA) Score=5.3 Pos=-48 [Oenococcus oeni PSU-1]
TTGTGATTTATTTTACAA
>OEOE_1248(adhE) Score=4.6 Pos=-107 [Oenococcus oeni PSU-1]
TAGTGATTTTTTTTACAA
>OEOE_1248(adhE) Score=5.6 Pos=-49 [Oenococcus oeni PSU-1]
TTGTTAATAAGTTCACAA
>OEOE_0527(adhB1) Score=4.9 Pos=-176 [Oenococcus oeni PSU-1]
TTGTAAATTTTTGTACAA
# RNA - yybP-ykoY
>OEOE_1363(atcL) Score=28.3 Pos=-131 [Oenococcus oeni PSU-1]
AACTTATTAAATGAGGGAGTAACGGCGAACGATTTCGTTCGCGGGAAATCCAAGTTGCACGAACGAATTGTTCTGGTGACCCTTAATCAGTGAGACTCATCTTAATTTT
# RNA - T-box(Ala)
>OEOE_1167(alaS) Score=61.5 Pos=-195 [Oenococcus oeni PSU-1]
GAATAGAAAACGGATATATTTTGAGAACGTTTTTTCAGAGAGGGCCTGGTTGATGTGAGGGCCTAATTCCTAATCAAAAGGCTCCCGTTTATTAATTAATTTAAAAAAGAGACACAAACATTGTGTGAAGCCCGGTGGTACCGCGATTTATCGCCCGGGCA
# RNA - T-box(Gly)
>OEOE_0992(glyQ) Score=31.5 Pos=-157 [Oenococcus oeni PSU-1]
TTATAAAGTGTCGCAAATTATTAAATGATTTGCGGAAATCAGGTGGAACCGCGTGTAAAGCGTCCTGAT
# RNA - T-box(Ile)
>OEOE_1139(ileS) Score=53.8 Pos=-216 [Oenococcus oeni PSU-1]
TAATGACTTTATATTCTGGAACAGAAAGTTAGAGTTTATGCGCACAGAGAGCCGGAACGCTGGGAACCGGTCGCCGATGAATTCTTTCAGATCAGCCGGTTAAAATAATTAATTTAGAAACGCTGAGGCGCACTGACCAAGTGCGTGAAGTTGGGTGGTACCACGTGAGAACGTCCCGATA
# RNA - T-box(Leu)
>OEOE_0839(leuS) Score=77.4 Pos=-158 [Oenococcus oeni PSU-1]
ACACAATTAGTAGTAGTAGATATAAGGTTTTTACAGAAAGCAAACGTTTGATGCGAGTTTGCAAAATCTTGATTCGAACTCGGCTGATAATTTTAATTAATTAATCTATATTGAGTGCGCTTTAGCGAATTCAGGTGGTACCGCGGAAATCCGTCCTGTTGTT
# RNA - T-box(Met)
>OEOE_1717(metQ) Score=91.2 Pos=-233 [Oenococcus oeni PSU-1]
CAAACGAATTGATCCGGAAAGTACTTTTCCAGTAATGTCTAGAGAGTCGGTACTAGCTGTAAGCCGATCTTTACTAAGAAAAGGAAAATGGCCGGTGATTGGTTGATACGAACGGTTTACCGAAAGTATCAAACGGAATGGTCCTCGTTATCGGACACGCCATTGCTGTTAGCCCATCTGCTAACAAAGATGGTTAGTAAGGTTTATTTGTGCAAGCAAAGAAACAAATCAGGATGGTAACGCGACAAGTCGCTTCTGTATT
>OEOE_1057 Score=83 Pos=-235 [Oenococcus oeni PSU-1]
TTCAAACGAATTGATCCGGAAAGTACTTTTCCAGTAATGTCTAGAGAGTCGGTACTAGCTGTAAGCCGATCTTTACTAAGAAAAGGAAAATGGCCGGTGATTGGTTGATACGAACGGTTTACCGAAAGTATCAAACGGAATGGTCCTCGTTATCGGACACGCCATTGCTGTTAGCCCATCTGCTAACAAAGATGGTTAGTAAGGTTTATTTGTGCAAGCAAAGAAACAAATCAGGATGGTAACGGGACAAGTCGCTTCTGTA
# RNA - T-box(Phe)
>OEOE_0917(pheS) Score=85.8 Pos=-243 [Oenococcus oeni PSU-1]
TTAAAAATTTGTGGAAGATTAGTAGGCTGTGATGTTGCAAGCGAATCGGGATTGGTGGAAGCCGATAACAGTAAAAGCTGAATTTCACTTCCAATTATTCTAGTTAATAGCTGGCGGATGGCTCCGTTATAAGCTTTAAGAGTTAGAAAAGTTTTTTGTTTTCTATAAATTTGGGTGGTAACACGATAAATTCGTCCCTGGTGC
# RNA - T-box(Thr)
>OEOE_0460(thrS) Score=63.6 Pos=-211 [Oenococcus oeni PSU-1]
TAAACATCGAGACCAGAAGCCGTAGTAGTTTGTCAAAGAGAATCGGGTTGGTGAGAACCGATACAAATGAGCGCGAAACTGACTAGCTCTAATAAATCATAAACAGAATACCAAAGAGGCCATTACCTTTAATGGTGAAGTTGGGTGGTACCGCGTTGTAAAAACGTCCCTCGTTA
# RNA - T-box(Tyr)
>OEOE_1815(tyrS) Score=72 Pos=-209 [Oenococcus oeni PSU-1]
TCTCGGCTGATAGTAGTGGATTGGCGGTCACACAGAAAGTTGGTGGAGCTGAAAACCAACCCAGAAAATTCATGAATTACACAGCAAACTTTGAGATCCGTCTCGATAATTAAGTTGGTGTTTTCCTTGAAAACACAATCCGGGTGGTACCGCGGAGAAATTCGTCCCGATTAT
# RNA - T-box(Val)
>OEOE_1392(valS) Score=68.3 Pos=-327 [Oenococcus oeni PSU-1]
ATACTAATAGTCAACTTAGAGGAGTAGACGATAACGTTTATAGAGATCTGATGGTTGGTGAAAATCAGAACGCTTAAATCGAAGGTTGCTAAGATATAGAAAACGGAAGATATTAAGTGGCTTGGCAACAAGCAACTTGGGTGGTACCACGCAAAAGCGTCCCGAGA
# TF - GlnR: OEOE_0951
>OEOE_1679(nrgA) Score=4.8 Pos=-62 [Oenococcus oeni PSU-1]
TTGTTATATTAGTTAACAC
>OEOE_0951(glnR) Score=5.7 Pos=-67 [Oenococcus oeni PSU-1]
ATGTTAGCTTTCCTAACAT
# TF - CopR: OEOE_1648
>OEOE_1648(copR) Score=5.8 Pos=-30 [Oenococcus oeni PSU-1]
AAGTCTACAAGTGTAGACTA
# TF - FabT: OEOE_1594
>OEOE_1595(fabA) Score=5.5 Pos=-294 [Oenococcus oeni PSU-1]
ATTTTGATCCTTAAATC
# TF - RbsR: OEOE_0146
>OEOE_0146(rbsR) Score=5.1 Pos=-47 [Oenococcus oeni PSU-1]
TGTTGTAAACGTTTTAAGAA
>OEOE_1612(rbsK) Score=6.4 Pos=25 [Oenococcus oeni PSU-1]
TTAGTAAAGCGTTTTACTTA
# TF - TreR: OEOE_1339
>OEOE_1342(treP) Score=5.5 Pos=-31 [Oenococcus oeni PSU-1]
AAAGTTGTACGTACAAGTGA
# TF - FatR: OEOE_0179
>OEOE_1715(PF06100) Score=6.4 Pos=-40 [Oenococcus oeni PSU-1]
GAATGAATATTCATTC
>OEOE_0179(fatR) Score=6.2 Pos=-33 [Oenococcus oeni PSU-1]
GAATGAATAATCATTC
>OEOE_0180(COG1511) Score=6.2 Pos=-54 [Oenococcus oeni PSU-1]
GAATGATTGTTCATTC
# TF - GalR: OEOE_0302
>OEOE_0307(OEOE_0356) Score=5.5 Pos=-231 [Oenococcus oeni PSU-1]
AATATTTTAGTAAAGATTT
# TF - Zur: OEOE_1189
>OEOE_1188(znuA) Score=5.5 Pos=-76 [Oenococcus oeni PSU-1]
GTAAAAGTAATATTTACCATTAA
>OEOE_1188(znuA) Score=6 Pos=-118 [Oenococcus oeni PSU-1]
TAACAAGTAATCATTACTAAGTA
>OEOE_0084(lp_0947) Score=6.6 Pos=-42 [Oenococcus oeni PSU-1]
TAAATAGTAATAATTACTTTTAA
>OEOE_1189(zur) Score=5.4 Pos=-95 [Oenococcus oeni PSU-1]
TTAATGGTAAATATTACTTTTAC
>OEOE_1189(zur) Score=6 Pos=-53 [Oenococcus oeni PSU-1]
TACTTAGTAATGATTACTTGTTA
# TF - MalR3: OEOE_0042
>OEOE_0041(malT2) Score=6.1 Pos=-59 [Oenococcus oeni PSU-1]
TTTTGTAAACGTTTACTTAA
>OEOE_0042(malR3) Score=6.1 Pos=-149 [Oenococcus oeni PSU-1]
TTAAGTAAACGTTTACAAAA
# TF - HxlR: OEOE_0125
>OEOE_0127(LVIS_0438) Score=6.1 Pos=-125 [Oenococcus oeni PSU-1]
TGGGTAAACGATTTCCTA
>OEOE_0127(LVIS_0438) Score=6.2 Pos=-70 [Oenococcus oeni PSU-1]
TAGGTAAGCGTTTACCCA
# TF - CcpN: OEOE_1329
>OEOE_1329(ccpN) Score=4.4 Pos=-144 [Oenococcus oeni PSU-1]
TAATTATGTTTAATAAAAAAA
# TF - CtsR: OEOE_0513
>OEOE_1310(grpE) Score=6.5 Pos=-71 [Oenococcus oeni PSU-1]
AAATGTTTGACCAATCTTGACTAT
>OEOE_1397(groS) Score=6.7 Pos=-72 [Oenococcus oeni PSU-1]
AAAAGTTTGACCTTTTTTGACCAA
>OEOE_0570(clpP) Score=6.7 Pos=-63 [Oenococcus oeni PSU-1]
AAAAGTTTGACCTTTCTTGACCAT
>OEOE_0289(hsp) Score=6.5 Pos=-96 [Oenococcus oeni PSU-1]
TTTTATTTGACCTTTCTTGACTTT
>OEOE_0640(clpE) Score=-1.3 Pos=-27 [Oenococcus oeni PSU-1]
AAGGTCAATAAAGGTCAAACATTG
>OEOE_0513(ctsR) Score=-0.9 Pos=-21 [Oenococcus oeni PSU-1]
TTAGTCAGGAATGGTCAAATTATG
# TF - LexA: OEOE_0970
>OEOE_0970(lexA) Score=4.9 Pos=-76 [Oenococcus oeni PSU-1]
ACGAACATGTGTTTGT
>OEOE_1026(parE) Score=4.8 Pos=-8 [Oenococcus oeni PSU-1]
ACGAATGAATGTTCGC
>OEOE_1382(recA) Score=5.2 Pos=-57 [Oenococcus oeni PSU-1]
ACGAACAAATGTTCGT
>OEOE_0374(uvrA) Score=4.2 Pos=-50 [Oenococcus oeni PSU-1]
GGGAACTAATGTTCGC
>OEOE_1000(dnaE) Score=5 Pos=-45 [Oenococcus oeni PSU-1]
GCGAACATACTTTCGT
>OEOE_1232(LJ1544) Score=4.8 Pos=-44 [Oenococcus oeni PSU-1]
TCGAACAAGCGTTCGT
# TF - BirA: OEOE_1596
>OEOE_1596(birA) Score=8.1 Pos=-48 [Oenococcus oeni PSU-1]
TTAGTTAAC----------------GTTAACAAA
# TF - YtrA: OEOE_1803
>OEOE_1805(ytrB) Score=6.6 Pos=-45 [Oenococcus oeni PSU-1]
CTGTACTAATTAATATAGTACAC
# TF - GntR1: OEOE_1524
>OEOE_1524(gntR1) Score=5.4 Pos=-64 [Oenococcus oeni PSU-1]
TATGTAATTTTTTTACTCA
>OEOE_1523(gntZ) Score=5.6 Pos=-78 [Oenococcus oeni PSU-1]
TATGTAAATATTTTACACG
>OEOE_1523(gntZ) Score=5.4 Pos=-46 [Oenococcus oeni PSU-1]
TGAGTAAAAAAATTACATA
>OEOE_1524(gntR1) Score=5.6 Pos=-32 [Oenococcus oeni PSU-1]
CGTGTAAAATATTTACATA
# TF - MleR: OEOE_1565
>OEOE_1564(mleS) Score=5.1 Pos=-83 [Oenococcus oeni PSU-1]
TATAAGATAATTTTATC
>OEOE_1565(mleR) Score=5.1 Pos=-16 [Oenococcus oeni PSU-1]
GATAAAATTATCTTATA
# TF - FlpA: OEOE_0355
>OEOE_0354(copZ) Score=6 Pos=-126 [Oenococcus oeni PSU-1]
TTCTTGACGGCCGTCAAGTT
>OEOE_0355(flpA) Score=6 Pos=-142 [Oenococcus oeni PSU-1]
AACTTGACGGCCGTCAAGAA
# TF - YxeR: OEOE_0733
>OEOE_0733(yxeR) Score=4.9 Pos=-35 [Oenococcus oeni PSU-1]
TTAGTGACGTGGTGTCACTTA
>OEOE_0733(yxeR) Score=3.6 Pos=-72 [Oenococcus oeni PSU-1]
AAATTGACGCCGTGTCACCAT
# TF - LSEI_0081: OEOE_0758
>OEOE_0758(LSEI_0081) Score=5 Pos=-141 [Oenococcus oeni PSU-1]
GTAACAAATGTTTC
>OEOE_0759(LSEI_0080) Score=5 Pos=-34 [Oenococcus oeni PSU-1]
GAAACATTTGTTAC
>OEOE_0759(LSEI_0080) Score=3.9 Pos=-53 [Oenococcus oeni PSU-1]
GTAACAAATGTATA