# TF - NadQ: CC1450
>CC3430(proA) Score=5 Pos=-73 [Caulobacter crescentus CB15]
TAAGCCTCAACCTGAGCATAA
>CC2912(nadA) Score=6.3 Pos=-85 [Caulobacter crescentus CB15]
TTATGCTCACTTTCAGCATAA
>CC2912(nadA) Score=6.1 Pos=-2 [Caulobacter crescentus CB15]
AAATGCTCACTTTGAGCATAA
>CC3619(nadE) Score=6.3 Pos=-39 [Caulobacter crescentus CB15]
TTATGCTCAGTTTCAGCATAA
# TF - NrdR: CC1358
>CC0260(nrdB) Score=5.6 Pos=-108 [Caulobacter crescentus CB15]
TCACAACATCTTGTGG
>CC1889(nrdJ) Score=4.4 Pos=-44 [Caulobacter crescentus CB15]
CCGCAACATCTATTGA
>CC1889(nrdJ) Score=5.6 Pos=-76 [Caulobacter crescentus CB15]
CTTCAACATCTTGTGG
>CC3492(nrdA) Score=5.5 Pos=-88 [Caulobacter crescentus CB15]
CCACAAGATATAGCGG
>CC0260(nrdB) Score=3.4 Pos=-76 [Caulobacter crescentus CB15]
CCACTAGATGAACCGA
# TF - SahR: CC2141
>CC2141(sahR) Score=6.9 Pos=-24 [Caulobacter crescentus CB15]
ACATAAAGATATCTTTATGT
>CC0482(metE) Score=6.7 Pos=-393 [Caulobacter crescentus CB15]
ACATAAAGAAATCTTTATAT
>CC0257(ahcY) Score=6.6 Pos=-90 [Caulobacter crescentus CB15]
ACATAAAGATATCTTTATGC
>CC0050(metK) Score=6.6 Pos=-90 [Caulobacter crescentus CB15]
GCATAAACATATCTTTATAT
# TF - Zur: CC0357
>CC0319(rplU) Score=5.8 Pos=-191 [Caulobacter crescentus CB15]
AGCGTGTTATAAAGTAACATTCC
>CC1517(znuK) Score=5.9 Pos=-97 [Caulobacter crescentus CB15]
GTGATGTTATATCATAACAATTG
>CC0214(znuL) Score=6.3 Pos=-66 [Caulobacter crescentus CB15]
GATACGTTATTTCATAACAGTCT
>CC0320(zrpW) Score=6.3 Pos=-35 [Caulobacter crescentus CB15]
GGAATGTTACTTTATAACACGCT
>CC1518(znuG) Score=4.3 Pos=-73 [Caulobacter crescentus CB15]
CAATTGTTATGATATAACATCAC
>CC0663(znuM) Score=4.1 Pos=-35 [Caulobacter crescentus CB15]
CCCCTGTTACAGAATAACAGGGG
# TF - HutC: CC0962
>CC0961(hutF) Score=6.2 Pos=-40 [Caulobacter crescentus CB15]
AATATGTATAGACATATT
>CC0960(hutI) Score=6.2 Pos=-62 [Caulobacter crescentus CB15]
AATATGTCTATACATATT
# TF - IscR: CC1866
>CC1866(iscR) Score=8.4 Pos=-128 [Caulobacter crescentus CB15]
ATACTTGACCGCCGCGCTTGGTCTT
# TF - NagQ: CC0445, CC0536
>CC0536(nagQ) Score=-0.4 Pos=-41 [Caulobacter crescentus CB15]
CATTCCATTTTAATACCA
>CC0445(nagQ) Score=-1.1 Pos=-125 [Caulobacter crescentus CB15]
AAGACCAAAAAGAAACCA
>CC0537(ptsI) Score=-1.3 Pos=-118 [Caulobacter crescentus CB15]
GATGCCAATGTGAGACCA
>CC0446(omp_nag) Score=5 Pos=-164 [Caulobacter crescentus CB15]
TGGTTTCTTTTTGGTCTT
>CC0539(omp_nag) Score=5.3 Pos=-152 [Caulobacter crescentus CB15]
TGGCACTATAATGGTATT
# TF - NtrC: CC1741
>CC1339(glnK) Score=4.8 Pos=-208 [Caulobacter crescentus CB15]
CGCTCAACTTTTGGGCG
>CC1968(glnB) Score=4.1 Pos=-141 [Caulobacter crescentus CB15]
CGCCTAGTTTTTAATCA
>CC1739(nifR3) Score=4.6 Pos=-70 [Caulobacter crescentus CB15]
TGATTACAAAATGAGCA
>CC0614(narK) Score=4.8 Pos=-31 [Caulobacter crescentus CB15]
TGCTAAAATCTTGAGCG
>CC0614(narK) Score=4.7 Pos=-7 [Caulobacter crescentus CB15]
CGCTCATTTGCTGAGCA
# TF - Fur: CC0057
>CC0028(omp2) Score=4.4 Pos=170 [Caulobacter crescentus CB15]
GATAAGAACGCCTCGCAAT
>CC0028(omp2) Score=5.3 Pos=148 [Caulobacter crescentus CB15]
ATTGCGACGGCGCCGCAAC
>CC2367 Score=4.8 Pos=-95 [Caulobacter crescentus CB15]
CTTGCGAAGCATTCTCAAG
>CC2367 Score=5 Pos=-129 [Caulobacter crescentus CB15]
TTTGCGATTGACTCGCAAT
>CC1956(nuoA) Score=4.6 Pos=-87 [Caulobacter crescentus CB15]
GTTGCGAACGTTTCTCAAT
>CC3263(bfd) Score=4.3 Pos=-75 [Caulobacter crescentus CB15]
AGTGAGAGTCAGTTGCAAA
>CC3263(bfd) Score=4.8 Pos=-38 [Caulobacter crescentus CB15]
GATGAGAATGACACTCAAT
>CC3059(PF03929) Score=4.2 Pos=-62 [Caulobacter crescentus CB15]
ATTGCAATTCGTTCTCAAG
>CC0139(omp3) Score=4.3 Pos=-72 [Caulobacter crescentus CB15]
ATTGCGAGTGACACTCAGA
>CC0139(omp3) Score=5.4 Pos=-96 [Caulobacter crescentus CB15]
ATTGCAAGTCAGTCGCATC
>CC0711(feoA) Score=4.1 Pos=-143 [Caulobacter crescentus CB15]
ACTGATAATCGTTCGCAAT
>CC2928(omp1) Score=5.9 Pos=-33 [Caulobacter crescentus CB15]
ATTGCGACGCACTCGCAAT
>CC2194(omp4) Score=5.1 Pos=-43 [Caulobacter crescentus CB15]
GTTGCGAGCCATTCGCATG
# TF - ModE: CC0327
>CC0327(modE) Score=6.5 Pos=23 [Caulobacter crescentus CB15]
TTATGCAGCCAAACTACATAA
>CC0328(modA) Score=6.5 Pos=-49 [Caulobacter crescentus CB15]
TTATGTAGTTTGGCTGCATAA
# TF - LexA: CC1902
>CC2040(lhr) Score=-0.9 Pos=-32 [Caulobacter crescentus CB15]
AAACAGAAAGGGAAC
>CC1087(recA) Score=1.8 Pos=-122 [Caulobacter crescentus CB15]
GAACATCTTGCGAAC
>CC3467(PF06319) Score=1 Pos=-28 [Caulobacter crescentus CB15]
GAACAAAGCTGGAAC
>CC3213(imuA) Score=0.4 Pos=-81 [Caulobacter crescentus CB15]
GAACAAAAGTGGAAC
>CC1926(dnaE) Score=-0.2 Pos=-155 [Caulobacter crescentus CB15]
GAACAAAACAAGAAA
>CC1926(dnaE) Score=0.1 Pos=-173 [Caulobacter crescentus CB15]
GAACAAAACCGGAAT
>CC2038(yoaA) Score=4.9 Pos=-42 [Caulobacter crescentus CB15]
GTTCCCATTCTGTTT
>CC1902(lexA) Score=5.1 Pos=-2 [Caulobacter crescentus CB15]
GTTTGCGGTTTGTTC
>CC2590(uvrA) Score=5.4 Pos=-93 [Caulobacter crescentus CB15]
GTTCGCATCTTGTTC
>CC0140(PF01078) Score=5.4 Pos=-78 [Caulobacter crescentus CB15]
GTTCGTTTTTCGTTC
>CC2272(nth) Score=5 Pos=-32 [Caulobacter crescentus CB15]
GTTCTTGTTATGTTC
>CC3711(COG5529) Score=4.8 Pos=-101 [Caulobacter crescentus CB15]
GTTCCGCTTTCGTTC
>CC1983(recN) Score=5.2 Pos=-62 [Caulobacter crescentus CB15]
GATCCCGTTTCGTTC
# TF - LiuR: CC0081
>CC1310(acdL2) Score=5.6 Pos=-105 [Caulobacter crescentus CB15]
GTTGACGCTAACGTCATC
>CC0081(liuR) Score=5.1 Pos=-108 [Caulobacter crescentus CB15]
GTTTACGTAAGCGTTGAC
>CC0081(liuR) Score=5.6 Pos=-114 [Caulobacter crescentus CB15]
GTTGACGTTTACGTAAGC
# TF - PsrA: CC2080
>CC2080(psrA) Score=4.4 Pos=-46 [Caulobacter crescentus CB15]
ATTCGAACGCCCGTAAGACT
>CC2074 Score=5.1 Pos=-29 [Caulobacter crescentus CB15]
ATCCGAACACCTGTTCGAAA
>CC0244 Score=5.5 Pos=-25 [Caulobacter crescentus CB15]
GCTCAAACAAGCGTTTGAGG
>CC3309(paaI) Score=5 Pos=-26 [Caulobacter crescentus CB15]
TTTCAAACGCTTGTTAGCCT
>CC3089 Score=4.8 Pos=-70 [Caulobacter crescentus CB15]
GGGCGAACAGATGTTTGACT
>CC1111 Score=4.5 Pos=-40 [Caulobacter crescentus CB15]
CATCTAACAAGTGTTTGATC
>CC0690(acdH) Score=5.9 Pos=-47 [Caulobacter crescentus CB15]
CTTCAAACAAGCGTTTGACA
>CC0246 Score=5.5 Pos=-41 [Caulobacter crescentus CB15]
ATTCAAACTGCTGTTTGAAT
>CC1967 Score=4.8 Pos=-30 [Caulobacter crescentus CB15]
CGCCCAACGAACGTTTGAAT
>CC3087 Score=4.6 Pos=-34 [Caulobacter crescentus CB15]
AAGAAAACAACTGTTTGGGC
>CC0427 Score=5.2 Pos=-69 [Caulobacter crescentus CB15]
GGCAAAACAAGCGTTTGACG
>CC1310 Score=5 Pos=-86 [Caulobacter crescentus CB15]
TTCCAAACGGCCGTTCGAGC
>CC0942 Score=5.3 Pos=-30 [Caulobacter crescentus CB15]
ATCCAAACAACTGTTCGAGG
>CC3076 Score=5.3 Pos=-28 [Caulobacter crescentus CB15]
ATTCAAACAAACGTTTAGGG
>CC3189(fadB) Score=5.2 Pos=-45 [Caulobacter crescentus CB15]
TGTCAAACAACCGTTCAAAC
>CC3462(fadA) Score=5.4 Pos=-34 [Caulobacter crescentus CB15]
ATTCAAACTAACGTTTAACG
>CC2049 Score=5.4 Pos=-89 [Caulobacter crescentus CB15]
ATGCGAACGATCGTTTGAAT
>CC0947(echH) Score=5.1 Pos=-39 [Caulobacter crescentus CB15]
GGTCATACGATCGTTTAAAA
>CC1568 Score=5.4 Pos=-27 [Caulobacter crescentus CB15]
TCTCAAACAATTGTTTGGGA
>CC3380 Score=5.3 Pos=-41 [Caulobacter crescentus CB15]
CTTCAAACAAGCGTTTCAAG
>CC1321(fadD2) Score=5 Pos=-99 [Caulobacter crescentus CB15]
CCTCAAACGCATGTTTGCAT
>CC2093 Score=5.1 Pos=-31 [Caulobacter crescentus CB15]
AACCAAACACACGTTTGAGG
# TF - RutR: CC2794
>CC2794(rutR) Score=5.7 Pos=-31 [Caulobacter crescentus CB15]
GTTTGACCAAATGGTCCAGA
>CC2795(rutB) Score=5.5 Pos=-137 [Caulobacter crescentus CB15]
TCTGGACCATTTGGTCAAAC
# TF - VanR: CC2392
>CC2392(vanR) Score=5.5 Pos=-94 [Caulobacter crescentus CB15]
ATTGGATCCAAT
>CC2392(vanR) Score=5.5 Pos=-55 [Caulobacter crescentus CB15]
ATTGGATCCAAT
>CC2393(vanA) Score=5.5 Pos=-98 [Caulobacter crescentus CB15]
ATTGGATCCAAT
>CC2393(vanA) Score=5.5 Pos=-59 [Caulobacter crescentus CB15]
ATTGGATCCAAT
# RNA - serC
>CC3216(serC) Score=52.5 Pos=-60 [Caulobacter crescentus CB15]
CCGGCGGGCCACGCCCCCCCAACGGGGCGCAGTCCATCTGTAAGGATGGGAGAC
# RNA - Glycine
>CC3436(omp) Score=53.2 Pos=-377 [Caulobacter crescentus CB15]
GACGTTGAACGCTGGAAAGCAGAGCGCGCGCCGCTCTCGCCGAAGGAGCAAGGCCTGCCGACTGTCTGGTCGGCCGCTGAATCTCTCAGGCGCCAAGGACAGCGGGGGCAGA
>CC3436(omp) Score=52.2 Pos=-462 [Caulobacter crescentus CB15]
AAGGCCTCTCGCGGGAGAGATCGGGCCTTGCCCGGCGCTGAAGGCGAAACCGCCCCGGAAACGCTCAAGCAGAAGGACCGCGCGAG
>CC3355(gcvT) Score=62.8 Pos=-260 [Caulobacter crescentus CB15]
CTCGACCCTCGCGGGAGACATCGGGATTCGATCCCGAGGCCGAAGGCGCAACCGCCCCGGAAACGCTCAGGCAAAAGGACCGCGCGGGTTTA
>CC3355(gcvT) Score=30.6 Pos=-165 [Caulobacter crescentus CB15]
ACGCTGGAAAGCAGTCTCTCCACCGGAGGGGCTCGCCGAAGGAGCAAGGCCAAACCCGTCCGGCAGAGGGGCGAGGCCGGAATCTCTCAGGCCCAAGGGACAGCG
# RNA - yybP-ykoY
>CC2370(COG2119) Score=56.9 Pos=-148 [Caulobacter crescentus CB15]
GCCGCCCACCTTTGGGGAGTAGCCGCCCGCGTCTATCAGCGGGCCCCGCCGTCAACACACTTGATCTTCCGGATCATGGCGCGGGGAAGGGAAGCGGACTTGAAGCTTCCTTGGCGAGACCAATGGCGCCGAT
# RNA - mini-ykkC
>CC3443(ykkC) Score=46.5 Pos=-68 [Caulobacter crescentus CB15]
GGCGCGGGGACGACCCCGCGCCTTTTGCTTTTCCGGGGACGACCCCG
# RNA - TPP
>CC2029(thiC) Score=63.1 Pos=-180 [Caulobacter crescentus CB15]
CGTCTGTTCACCGGGGGGCCGCTCGCGCGGCTGAGATTGGGCTCACGCCCTGACCCGTAGAACCTGATCCGGGTCATGCCGGCGAAGGGAGGGAACGCGGACGACAG
# RNA - Cobalamin
>CC0482(metE) Score=98.6 Pos=-345 [Caulobacter crescentus CB15]
TCTGTTGCCGTTGTCGTGGTCTGCGGACGTTCGCGTCCGGAGCTAAGAGGGAAGTCGGTGAGGGCGTGAAACCCTGAATCCGGCGCTGCCCCCGCAACTGTGAGCGGCGAGCCGCTGTCCGTTTCGTGTCACTGACGCGCCGAAGCTGGTTCGGGGATGCGTCGGGAAGGCCAGGGCAGGGGTGACGACCCGTGAGCCAGGAGACCTGCCTCGACAGATAACGTCCTCCG
>CC1750(btuB) Score=128.8 Pos=-324 [Caulobacter crescentus CB15]
GCTCTAGCTTCGCGTCAGGTTCCTCGAAAGAGGATGAAAAGGGAACGAGGTTGAAGACCTCGGCTGCCCCCGCAACTGTAAGCGGCGAGCTTCGCGTCACATGCCACTGGGCCCAAAAGGCCTGGGAAGGCGACGCCCAGAAGCATTGACCCGTGAGCCAGGAGACCTGCCCGGCGCAGTCGTTCATCGCT
# TF - HrcA: CC0153
>CC0686(groS) Score=7.1 Pos=-86 [Caulobacter crescentus CB15]
TTGGCACTCGAATGGAGCGACTGCTAA
# TF - BglR1: CC1753
>CC1754(omp(Bgl)1) Score=6.7 Pos=-98 [Caulobacter crescentus CB15]
AATTGGAAGCGCTTCCATAG
# TF - BglR2: CC0969
>CC1103(glcT) Score=5.8 Pos=-124 [Caulobacter crescentus CB15]
GGTTGACAACGTTGTCACGT
>CC0969(bglR2) Score=6.4 Pos=-421 [Caulobacter crescentus CB15]
GAATGTCAACGTTGTCATTT
>CC0970(omp(Bgl)2) Score=6.4 Pos=-273 [Caulobacter crescentus CB15]
AAATGACAACGTTGACATTC
# TF - GluR: CC2053
>CC0337(sucC) Score=5.9 Pos=-259 [Caulobacter crescentus CB15]
TTATGACAACGTTGCCATTG
>CC1471(ppdK) Score=5.9 Pos=-198 [Caulobacter crescentus CB15]
GCCGGACAACGTTGTCATTG
>CC2057(zwf) Score=6.5 Pos=-73 [Caulobacter crescentus CB15]
TCATGACAACGTTGTCATAG
>CC1224(gnl) Score=5.1 Pos=-56 [Caulobacter crescentus CB15]
CGGTGACATCGCTGTCATGG
>CC2051(pykA) Score=5.1 Pos=-216 [Caulobacter crescentus CB15]
TAACGTCAACGTTGTCAGGT
>CC2053(gluR) Score=6.3 Pos=-67 [Caulobacter crescentus CB15]
CCATGACAGCCTTGTCATGG
# TF - CC1627: CC1627
>CC1628 Score=4.7 Pos=-81 [Caulobacter crescentus CB15]
CGATGAATTCGATTACATTG
>CC1627 Score=4.7 Pos=-116 [Caulobacter crescentus CB15]
CAATGTAATCGAATTCATCG
>CC1634 Score=4.7 Pos=-117 [Caulobacter crescentus CB15]
CAATGTAACCCATTTCATGG
>CC1633(PF06439) Score=4.7 Pos=-54 [Caulobacter crescentus CB15]
CCATGAAATGGGTTACATTG
# TF - BglR3: CC2316
>CC2315(bglT) Score=5.8 Pos=-200 [Caulobacter crescentus CB15]
TCGCGGCGACGTCGTAGATC
>CC2316(bglR3) Score=5.8 Pos=14 [Caulobacter crescentus CB15]
GATCTACGACGTCGCCGCGA
# TF - YrdX3: CC3116
>CC3115(COG5349) Score=16.7 Pos=-59 [Caulobacter crescentus CB15]
ATCCATACATT-(8)-AATGTATGGAT-(10)-ATTGTAGGAAG
# TF - FixJ: CC0758
>CC0752(fixK) Score=4.4 Pos=-116 [Caulobacter crescentus CB15]
CTCAGCATCGCCGCCTAA
>CC0752(fixK) Score=3.9 Pos=-102 [Caulobacter crescentus CB15]
CTAAGGGACTCCCCTTAG
>CC0752(fixK) Score=5.2 Pos=-73 [Caulobacter crescentus CB15]
TTAGGCGCATGCCCCGAA
# TF - FixK: CC0752
>CC0762(cydA) Score=6.2 Pos=-93 [Caulobacter crescentus CB15]
GCCTTGATCCGGATCAAGGA
>CC3407(ctaC) Score=5.6 Pos=-45 [Caulobacter crescentus CB15]
GCCTTGATCGGGCTCAAATC
>CC3407(ctaC) Score=4.9 Pos=-12 [Caulobacter crescentus CB15]
GCCGTGAGGGATATGAAGGC
>CC1401(ccoN) Score=5.8 Pos=-73 [Caulobacter crescentus CB15]
GCTTTGATGCGTGTCAAAGC
>CC0761(cydD) Score=6.2 Pos=-50 [Caulobacter crescentus CB15]
TCCTTGATCCGGATCAAGGC
>CC0759(fixL) Score=5 Pos=-37 [Caulobacter crescentus CB15]
GCCTTGACCTGGCTCAAACG
>CC0752(fixK) Score=5.2 Pos=-143 [Caulobacter crescentus CB15]
GCCTTGATCGGCGTCAAAAT