# TF - NsrR: Pnap_1327 1999525 Pnap_1025 PF01152 1999832 Pnap_1326 nirK 2002512 Pnap_3969 PF10006 2002513 Pnap_3970 nnrS 1999834 Pnap_1328 norB 1999835 Pnap_1329 PF10006 1999833 Pnap_1327 nsrR # TF - HexR: Pnap_0652 1999147 Pnap_0653 zwf 1999146 Pnap_0652 hexR 2001520 Pnap_2986 edd 2001519 Pnap_2985 eda 2002416 Pnap_3873 pykA # TF - NrtR: Pnap_3721 2002263 Pnap_3720 pncA 2002262 Pnap_3719 pncB 2002261 Pnap_3718 nadE 2002260 Pnap_3717 nadM 2002264 Pnap_3721 nrtR # TF - NrdR: Pnap_2908 2001922 Pnap_3385 nrdA 2001923 Pnap_3386 nrdB # TF - Zur: Pnap_1145 1999651 Pnap_1145 zur 1999652 Pnap_1146 COG2884 1999653 Pnap_1147 COG4591 1999654 Pnap_1148 Aave_2810 1999655 Pnap_1149 PF11736 1999650 Pnap_1144 znuC 1999649 Pnap_1143 znuB 1999648 Pnap_1142 znuA # TF - NorR: Pnap_1305 1999811 Pnap_1305 norR 1999810 Pnap_1304 hmp # TF - IscR: Pnap_2291 2000813 Pnap_2291 iscR 2000812 Pnap_2290 iscS 2000811 Pnap_2289 iscU 2000810 Pnap_2288 iscA 2000809 Pnap_2287 hscB 2000808 Pnap_2286 hscA 2000807 Pnap_2285 fdx # TF - NtrC: Pnap_2777 2001305 Pnap_2780 glnA 2001304 Pnap_2779 ntrZ 2001303 Pnap_2778 ntrB 2001302 Pnap_2777 ntrC 1999920 Pnap_1414 nrtA 1999919 Pnap_1413 nrtB 1999918 Pnap_1412 nrtC 1999917 Pnap_1411 narK 1998607 Pnap_0120 glnK 1998608 Pnap_0121 amtB # TF - LexA: Pnap_1918 2000436 Pnap_1918 lexA 1999705 Pnap_1199 parE 1999706 Pnap_1200 yjbJ 1999707 Pnap_1201 parC 1998170 Pnap_4894 imuA 1998171 Pnap_4895 imuB 1998172 Pnap_4896 dnaE2 2002499 Pnap_3956 recA 2002498 Pnap_3955 recX # TF - LiuR: Pnap_0453 1998947 Pnap_0453 liuR 1998948 Pnap_0454 paaI 1998949 Pnap_0455 liuA 1998950 Pnap_0456 cah 1998951 Pnap_0457 aceK 1998952 Pnap_0458 ivdA 1998953 Pnap_0459 ivdC 2002062 Pnap_3524 mcm 1999729 Pnap_1223 etfB 1999730 Pnap_1224 etfA 1999731 Pnap_1225 acdH 2000116 Pnap_1609 paaH # TF - FadP: Pnap_3478 2002016 Pnap_3478 fadP 2002015 Pnap_3477 acdH 2002014 Pnap_3476 acdB 2002013 Pnap_3475 null 2002012 Pnap_3474 acdA 2002011 Pnap_3473 echH 1999729 Pnap_1223 etfB 1999730 Pnap_1224 etfA 1999731 Pnap_1225 acdH2 1999732 Pnap_1226 null 2000357 Pnap_1842 fadB 2000358 Pnap_1843 fadA 2002198 Pnap_3655 null # TF - VanR: Pnap_2731 2001256 Pnap_2731 vanR 2001255 Pnap_2730 Pnap_2730 2001254 Pnap_2729 CtesDRAFT_4799 2001253 Pnap_2728 CtesDRAFT_4800 2001252 Pnap_2727 CtesDRAFT_4801 2001251 Pnap_2726 CtesDRAFT_4802 2001250 Pnap_2725 vanA 2001249 Pnap_2724 vanB # RNA - TPP 1998506 Pnap_0019 thiC # TF - HrcA: Pnap_0909 1999152 Pnap_0658 groS 1999151 Pnap_0657 groL 1999386 Pnap_0889 rpoH # TF - GntR: Pnap_0047 1998533 Pnap_0046 gntK 1998532 Pnap_0045 gntY 1998531 Pnap_0044 gntZ 1998530 Pnap_0043 gntX 1998534 Pnap_0047 gntR # TF - NmlR: Pnap_2189 2000710 Pnap_2189 nmlR 2000709 Pnap_2188 pcaC # TF - CadR-PbrR: Pnap_4002 2002544 Pnap_4001 cadA # RNA - SAH_riboswitch 1998983 Pnap_0489 ahcY 1998984 Pnap_0490 COG1189 1998985 Pnap_0491 metF 1998604 Pnap_0117 metH # TF - CueR: Pnap_4091 2002633 Pnap_4090 copA 2002634 Pnap_4091 cueR2 2002632 Pnap_4089 copZ2 # TF - YrdX: Pnap_2106 2000626 Pnap_2105 PF02635 2000625 Pnap_2104 COG388 2000624 Pnap_2103 COG2516 2000623 Pnap_2102 COG3153 2000622 Pnap_2101 COG2144 2000621 Pnap_2100 COG438 (RfaG) # TF - ModE3: Pnap_1508 1998535 Pnap_0048 Ajs_3943 1998536 Pnap_0049 Ajs_3944 1998537 Pnap_0050 Ajs_3945 1998538 Pnap_0051 Ajs_3946 1998539 Pnap_0052 Ajs_3947 2000016 Pnap_1509 tupA 2000017 Pnap_1510 tupC 2000018 Pnap_1511 tupB # TF - Daci_0595: Pnap_0403 1998891 Pnap_0402 PF00892 1998890 Pnap_0401 COG1167 1998889 Pnap_0400 phzF # TF - YdcR: Pnap_2093 2000617 Pnap_2096 COG0348 2000616 Pnap_2095 COG2863 2000615 Pnap_2094 COG3258 # TF - GabR: Pnap_2866 2001392 Pnap_2865 puuD 2001391 Pnap_2864 puuA 2001390 Pnap_2863 gatP 2001389 Pnap_2862 puuO 2001388 Pnap_2861 puuL 2001387 Pnap_2860 puuM 2001386 Pnap_2859 puuN # TF - GabR2: Pnap_2629 2001154 Pnap_2630 gabT 2001155 Pnap_2631 gbtA 2001156 Pnap_2632 gbtD 2001157 Pnap_2633 gbtB 2001158 Pnap_2634 gbtC 2001159 Pnap_2635 speB 2001160 Pnap_2636 gabD # TF - Aave_3430: Pnap_3431 2001967 Pnap_3430 null 2001968 Pnap_3431 Aave_3430 # TF - UxuR2: Pnap_2075 2000596 Pnap_2075 uxuR2-2 2000595 Pnap_2074 null 2000594 Pnap_2073 null 2000593 Pnap_2072 null 2000592 Pnap_2071 null 2000591 Pnap_2070 null 2000590 Pnap_2069 mtlD2 2000589 Pnap_2068 uxaA 2000588 Pnap_2067 Pnap_1486 # TF - SdhR: Pnap_3031 2001565 Pnap_3031 sdhR 2001566 Pnap_3032 sdhC 2001567 Pnap_3033 sdhD 2001568 Pnap_3034 sdhA 2001569 Pnap_3035 sdhB 2001570 Pnap_3036 COG2938 2001571 Pnap_3037 gltA 2001564 Pnap_3030 mdh 2001563 Pnap_3029 citE 2001562 Pnap_3028 Aave_2209 2001561 Pnap_3027 acnB 2001382 Pnap_2855 aceA # TF - GudR: Pnap_1131 1999636 Pnap_1130 gudD # TF - GguR: Pnap_1590 2000097 Pnap_1590 gguR 2000098 Pnap_1591 udh 2000099 Pnap_1592 uxuL1 2000100 Pnap_1593 uxuP 2000101 Pnap_1594 uxuQ 2000102 Pnap_1595 uxuM 2000103 Pnap_1596 kdgD 2000104 Pnap_1597 garD 2000105 Pnap_1598 kgsD 2000106 Pnap_1599 garL 2000107 Pnap_1600 garR 2000108 Pnap_1601 tctC1