# TF - TrpR: VP0553 340468 VP1956 trpE 340469 VP1957 trpD_a 340470 VP1958 trpD_b 340471 VP1959 trpC 340472 VP1960 trpB 340473 VP1961 trpA 342177 VPA0585 trpB2 340849 VP2337 COG0733 # TF - FabR: VP2941 342195 VPA0603 COG2030 340725 VP2213 fadL 340104 VP1591 fabA 341560 VP3048 hyIII 338863 VP0351 lcfH 342299 VPA0707 OLE1 # TF - NsrR: VP2808 340902 VP2390 nnrS 341321 VP2809 hmp 341320 VP2808 nsrR # TF - BirA: VP2931 339625 VP1113 bioB 339626 VP1114 bioF 339627 VP1115 bioC 339628 VP1116 bioD 339624 VP1112 bioA # TF - HexR: VP1236 341341 VP2829 gpmM 341273 VP2761 ppc 339183 VP0671 pepD 339095 VP0583 aceB 339096 VP0584 aceA 342579 VPA0987 nirB 342578 VPA0986 nirD 339582 VP1070 ygaW 338996 VP0484 gltB 338995 VP0483 gltD 340669 VP2157 gapA 338882 VP0370 mtlA 338881 VP0369 mtlD 338880 VP0368 mtlR 342514 VPA0922 pntA 342513 VPA0921 pntB 341243 VP2731 pgi 339504 VP0992 pflA 343237 VPA1645 glgX 338751 VP0239 tpiA 340558 VP2046 ptsG 339009 VP0497 grcA # TF - ArgR: VP0324 341165 VP2653 argF 341164 VP2652 arcA 342228 VPA0636 artP 342229 VPA0637 artI 342230 VPA0638 artQ 342231 VPA0639 artM 341268 VP2756 argH 341271 VP2759 argC 341270 VP2758 argB 341269 VP2757 argG 341272 VP2760 argE 341309 VP2797 argD 341308 VP2796 astA 341307 VP2795 astD 340883 VP2371 argA # TF - NrtR: VPA0308 341901 VPA0309 pncB 341900 VPA0308 nrtR 341899 VPA0307 pncA # TF - NrdR: VP0678 342533 VPA0941 nrdD 342532 VPA0940 nrdG 340446 VP1934 nrdA 340447 VP1935 nrdB 340448 VP1936 yfaE # TF - Zur: VP2729 338815 VP0303 VC2551 338814 VP0302 zbp 340843 VP2331 rpmE2 340842 VP2330 rpmJ2 339365 VP0853 znuA 339364 VP0852 znuC 339363 VP0851 znuB 340433 VP1921 ribA 342900 VPA1308 omr 342899 VPA1307 znuA2 342898 VPA1306 znuB2 338815 VP0303 VC2551 338814 VP0302 zbp 338813 VP0301 VV1_0719 338812 VP0300 VC2554 338811 VP0299 VC2555 # TF - PdhR: VP2520 341032 VP2520 pdhR 341031 VP2519 aceE 341030 VP2518 aceF 341029 VP2517 lpdA # TF - FadR: VP2071 340104 VP1591 fabA 340721 VP2209 fadI 340720 VP2208 fadJ 340663 VP2151 fadH 339346 VP0834 VC2105 340801 VP2289 fadE2 341459 VP2947 plsB 338542 VP0030 fadB 338541 VP0029 fadA # TF - PrpR: VP1649 340161 VP1649 prpR 340160 VP1648 prpB 340159 VP1647 prpC 340158 VP1646 acnD 340157 VP1645 prpF 340156 VP1644 prpE # TF - HutC: VP1277 339789 VP1277 hutC 339788 VP1276 hutI 339787 VP1275 hutG2 339786 VP1274 hutU 339785 VP1273 hutH # TF - HypR: VP1328 339847 VP1335 hypD 339844 VP1332 COG687 (PotD) 339846 VP1333 COG2423 339842 VP1330 hypE 339841 VP1329 hypH 339840 VP1328 hypR 339839 VP1327 null 339843 VP1331 hypO # TF - IscR: VP0595 338658 VP0146 nfuA 339107 VP0595 iscR 339108 VP0596 iscS 339109 VP0597 iscU 339110 VP0598 iscA 339111 VP0599 hscB 339112 VP0600 hscA 339113 VP0601 fdx 339114 VP0602 yfhJ 340986 VP2474 erpA # TF - NagC: VP0828 339754 VP1241 tfoX1 340669 VP2157 gapA 340670 VP2158 aldE 339009 VP0497 grcA 341579 VP3067 glmU 339535 VP1023 glgC 339536 VP1024 glgA 339314 VP0802 ybfM 339267 VP0755 hex 339343 VP0831 nagE1 340558 VP2046 ptsG 341074 VP2562 pyrG 341073 VP2561 eno 339341 VP0829 nagA 339340 VP0828 nagC 343243 VPA1651 mcp2 341141 VP2629 mcp 339541 VP1029 VP1029 339540 VP1028 tfoX 339131 VP0619 chi 339307 VP0795 ptsH 339306 VP0794 ptsI 339305 VP0793 crr 341647 VPA0055 chiA 341112 VP2600 pgk 341111 VP2599 fbaA 341630 VPA0038 nagB # TF - NtrC: VP0118 340035 VP1523 amtB2 338631 VP0119 ntrB 338630 VP0118 ntrC 341005 VP2493 glnK 341004 VP2492 amtB 338633 VP0121 glnA # TF - Fur: VP0833 343026 VPA1434 null 342019 VPA0427 hutW 342020 VPA0428 huvX 342021 VPA0429 hutZ 341159 VP2647 VC0426 341456 VP2944 COG3315 341749 VPA0157 PF03929 341750 VPA0158 PF10029 341751 VPA0159 cbiM 341752 VPA0160 VIBHAR_06747 341753 VPA0161 VIBHAR_06746 341754 VPA0162 PF01297 341755 VPA0163 COG1121 341756 VPA0164 COG1108 341757 VPA0165 COG0803 340658 VP2146 PF00106 341372 VP2860 sodA 340622 VP2110 PF10952 342258 VPA0666 VCA0743 341114 VP2602 irgA 342128 VPA0536 VV20568 342129 VPA0537 VV20567 342130 VPA0538 VV20566 342131 VPA0539 VV20565 342018 VPA0426 tonB-hmu 342017 VPA0425 exbB-hmu 342016 VPA0424 exbD-hmu 342015 VPA0423 hmuT 342014 VPA0422 hmuU 342013 VPA0421 hmuV 339676 VP1164 PF11449 342474 VPA0882 null 339369 VP0857 feoA 339370 VP0858 feoB 339371 VP0859 feoC 343027 VPA1435 fhuA 343028 VPA1436 fhuC 343029 VPA1437 fhuD 343030 VPA1438 fhuB 343249 VPA1657 fepA 341003 VP2491 fbpA 341002 VP2490 fbpB 341001 VP2489 fbpC 339677 VP1165 ppaC 343059 VPA1467 ptrB 343058 VPA1466 hutR 343057 VPA1465 VCA0065 343056 VPA1464 VCA0066 343055 VPA1463 VCA0067 340440 VP1928 nrfB 340439 VP1927 nfrC 340438 VP1926 nrfD 341742 VPA0150 fhuE 341743 VPA0151 PF11932 341744 VPA0152 exbB1 341745 VPA0153 exbB2 341746 VPA0154 exbD2 341747 VPA0155 tonB 341748 VPA0156 VC1543 341596 VPA0004 VV21178 341595 VPA0003 VV21177 341594 VPA0002 VCA0003 340844 VP2332 null 342249 VPA0657 vctP 342250 VPA0658 vctD 342251 VPA0659 vctB 342252 VPA0660 vctC 340673 VP2161 COG3016 338586 VP0074 VC0074 340432 VP1920 irpA 342571 VPA0979 iutA 342475 VPA0883 VCA0575 340121 VP1609 VV1_2646 340122 VP1610 pqiA 340123 VP1611 pqiB 341384 VP2872 VC1572 341385 VP2873 fumC 343250 VPA1658 VPA1658 343251 VPA1659 VPA1659 343252 VPA1660 VPA1660 343253 VPA1661 VPA1661 343254 VPA1662 VPA1662 342127 VPA0535 VCA1041 343054 VPA1462 torS 343086 VPA1494 VV20793 343087 VPA1495 VV20794 342255 VPA0663 null 341115 VP2603 irgB 341281 VP2769 bfd 341280 VP2768 bfr 339369 VP0857 feoA # TF - UxuR: VPA1701 343293 VPA1701 uxuR 343295 VPA1703 uxuQ 343296 VPA1704 uxuM 343297 VPA1705 uxuB 343298 VPA1706 uxaC 343299 VPA1707 kdgK 343300 VPA1708 eda 343301 VPA1709 ygjV 343294 VPA1702 uxuP 343292 VPA1700 uxuA # TF - KdgR: VPA0076 341669 VPA0077 kduD 341670 VPA0078 ygjV 341671 VPA0079 kdgF 341672 VPA0080 spiX 341674 VPA0082 kdgK 341675 VPA0083 eda 341677 VPA0085 kdgM 341678 VPA0086 pelX 341668 VPA0076 kdgR 341679 VPA0087 togX1 341680 VPA0088 ogl 341676 VPA0084 togX2 # TF - FruR: VPA0814 342405 VPA0813 fruB 342404 VPA0812 fruK 342403 VPA0811 fruA 342406 VPA0814 fruR # TF - PurR: VP1030 339391 VP0879 folD 339129 VP0617 guaA 339640 VP1128 purB 339775 VP1263 purC 341548 VP3036 purE 341549 VP3037 purK 338668 VP0156 xanP 342426 VPA0834 fhs 340796 VP2284 upp 340797 VP2285 purM 340798 VP2286 purN 339178 VP0666 purL 339644 VP1132 gsk 339809 VP1297 purT 340698 VP2186 cvpA 340697 VP2185 purF 341408 VP2896 purH 341409 VP2897 null 341410 VP2898 purD 339227 VP0715 glyA # TF - RbsR: VPA1082 342679 VPA1087 rbsD 342678 VPA1086 rbsA 342677 VPA1085 rbsC 342676 VPA1084 rbsB 342675 VPA1083 rbsK 342674 VPA1082 rbsR # TF - LexA: VP2945 341457 VP2945 lexA 340854 VP2342 dinB 341062 VP2550 recA 341061 VP2549 recX 339160 VP0648 recN 340661 VP2149 topB 339776 VP1264 VC1191 340612 VP2100 uvrB 340377 VP1865 intIA 340546 VP2034 imuA 340547 VP2035 imuB 340548 VP2036 dnaE2 339940 VP1428 VC1368 338669 VP0157 recG 339030 VP0518 mutH 338606 VP0094 rmuC 339563 VP1051 ruvA 339564 VP1052 ruvB 341224 VP2712 uvrA 341525 VP3013 uvrD 340891 VP2379 yebG 341458 VP2946 VP2946 # TF - LiuR: VPA0619, VPA1124 342235 VPA0643 etfD2 342747 VPA1155 etfD1 342745 VPA1153 livG 342744 VPA1152 fadD 342743 VPA1151 livH 342742 VPA1150 livM 342741 VPA1149 livK 342740 VPA1148 livF 342748 VPA1156 etfB 342749 VPA1157 etfA 342212 VPA0620 ivdA1 342213 VPA0621 ivdB1 342214 VPA0622 ivdC1 342215 VPA0623 ivdD1 342216 VPA0624 ivdE1 342217 VPA0625 ivdF 342218 VPA0626 ivdG1 342715 VPA1123 ivdA2 342714 VPA1122 ivdB2 342713 VPA1121 ivdC2 342712 VPA1120 ivdD2 342711 VPA1119 ivdE2 342710 VPA1118 ivdF 342709 VPA1117 ivdG2 342716 VPA1124 liuR 342717 VPA1125 liuA 342718 VPA1126 liuB 342719 VPA1127 liuC 342720 VPA1128 liuD 342721 VPA1129 liuE 342211 VPA0619 liuR 342210 VPA0618 liuA 342209 VPA0617 liuB 342208 VPA0616 liuC 342207 VPA0615 liuE # TF - EbgR: VP2402 340914 VP2402 ebgR 340915 VP2403 ebgA 340916 VP2404 ebgC # TF - PsrA: VP1229 340663 VP2151 fadH 338542 VP0030 fadB 338541 VP0029 fadA 340721 VP2209 fadI 340720 VP2208 fadJ 339095 VP0583 mdh 339741 VP1229 psrA 339742 VP1230 fadE 339382 VP0870 fadD # TF - PhnR: VPA0240 341946 VPA0354 phnS2 341945 VPA0353 PF01663 341944 VPA0352 phnU2 341943 VPA0351 phnV2 341942 VPA0350 phnT2 341941 VPA0349 COG0560 341827 VPA0235 phnW 341826 VPA0234 COG0160 341825 VPA0233 phnX 341947 VPA0355 phnR2 341830 VPA0238 phnT 341831 VPA0239 phnU 341832 VPA0240 phnR 341833 VPA0241 VCA0599 341828 VPA0236 phnS # TF - NorR2: VP1190 339702 VP1190 norR2 339701 VP1189 hcp 339700 VP1188 hcr # RNA - mini-ykkC 342348 VPA0756 ykkC # RNA - MOCO_RNA_motif 340608 VP2096 moaA 340607 VP2095 moaB 340606 VP2094 moaC 340605 VP2093 moaD 340604 VP2092 moaE # RNA - FMN 342842 VPA1250 ribB # RNA - Trp_leader 340468 VP1956 trpE 340469 VP1957 trpG 340470 VP1958 trpD 340471 VP1959 trpC 340472 VP1960 trpB 340473 VP1961 trpA # RNA - yybP-ykoY 338535 VP0023 COG2119 342448 VPA0856 ykoY # RNA - Purine 342884 VPA1292 add # RNA - Lysine 341228 VP2715 lysC 339646 VP1134 lysW # RNA - Leu_leader 338857 VP0346 leuA # RNA - TPP 341539 VP3027 thiC 341538 VP3026 thiE 341537 VP3025 thiF 341536 VP3024 thiS 341535 VP3023 thiG 341534 VP3022 thiH 341728 VPA0136 thiD 341727 VPA0135 thiZ 341726 VPA0134 thiX 341725 VPA0133 thiY 341724 VPA0132 tenA 341723 VPA0131 thiM 341722 VPA0130 thiE2 338828 VP0316 thiB 338829 VP0317 thiP 338830 VP0318 thiQ # RNA - GEMM_RNA_motif 339540 VP1028 tfoX 343190 VPA1598 cbp # RNA - S15 340965 VP2453 rpsO # RNA - Glycine 340253 VP1741 glyP # RNA - Thr_leader 339006 VP0494 thrA 339007 VP0495 thrB 339008 VP0496 thrC # RNA - Cobalamin 341450 VP2938 btuB 341449 VP2937 COG2102 341448 VP2936 COG0796 # RNA - His_leader 339649 VP1137 hisG 339650 VP1138 hisD 339651 VP1139 hisC 339652 VP1140 hisB 339653 VP1141 hisH 339654 VP1142 hisA 339655 VP1143 hisF 339656 VP1144 hisI # TF - NarP: VPA1195 342579 VPA0987 nirB 342578 VPA0986 nirD 342577 VPA0985 nirC 342576 VPA0984 cysG 340440 VP1928 nrfB 340439 VP1927 nfrC 340438 VP1926 nrfD 340437 VP1925 nrfE 340436 VP1924 nrfX 340435 VP1923 nrfF 340633 VP2121 adhE 342158 VPA0566 adhB 342789 VPA1197 napF 342790 VPA1198 napD 342791 VPA1199 napA 342792 VPA1200 napB 342793 VPA1201 napC 341375 VP2863 aspA 341376 VP2864 dcuA 340608 VP2096 moaA 340607 VP2095 moaB 340606 VP2094 moaC 340605 VP2093 moaD 340604 VP2092 moaE 342650 VPA1058 nrtC 342649 VPA1057 nrtB 342648 VPA1056 nrtD 342647 VPA1055 nirB4 342646 VPA1054 nirD4 339506 VP0994 pflB 340441 VP1929 nrfA 342788 VPA1196 narQ 342787 VPA1195 narP 341719 VPA0127 torY 341720 VPA0128 torZ 340735 VP2223 ccmA 340734 VP2222 ccmB 340733 VP2221 ccmC 340732 VP2220 ccmD 340731 VP2219 ccmE 340730 VP2218 ccmF 340729 VP2217 ccmG 340728 VP2216 ccmH 340727 VP2215 ccmH # TF - GntR: VP0058 338576 VP0064 gntU 338577 VP0065 eda 338575 VP0063 gntK 338574 VP0062 edd # TF - NmlR: VPA1142 342733 VPA1141 pcaC # TF - SoxR: VPA0335 341927 VPA0335 soxR 341925 VPA0333 PF07690 341983 VPA0391 PF00903 343277 VPA1685 PF00903 343330 VPA1738 wrbA # TF - ZntR: VP2894 339471 VP0959 zntA # TF - CueR: VPA0662 339270 VP0758 copA 339269 VP0757 copG 342604 VPA1012 PF00034 342076 VPA0484 VCA0262 342075 VPA0483 null 342074 VPA0482 cusC 342073 VPA0481 cusB 342072 VPA0480 cusA 342071 VPA0479 cusF # TF - MetJ: VP2766 341277 VP2765 metB 341276 VP2764 metL 338891 VP0379 metQ2 341275 VP2763 metF 339218 VP0706 metN 339217 VP0705 metI 339216 VP0704 metQ 340263 VP1751 metA 339144 VP0632 metT 341118 VP2606 metK 341450 VP2938 btuB 341229 VP2717 metH 341278 VP2766 metJ 343073 VPA1481 mtsA 343074 VPA1482 mtsB 343075 VPA1483 mtsC 340488 VP1976 metR 340486 VP1974 metE # TF - GalR: VP2393 340905 VP2393 galR 340912 VP2400 galE 340911 VP2399 galT 340910 VP2398 galK 340909 VP2397 galM # TF - SgaR: VPA0232 341823 VPA0231 sgaA 341822 VPA0230 sgaB 341821 VPA0229 sgaT 341824 VPA0232 sgaR # TF - CelR: VP2632 341150 VP2638 celG 341149 VP2637 celB 341148 VP2636 celD 341147 VP2635 celA 341146 VP2634 bglA 341145 VP2633 celE 341144 VP2632 celR # TF - TreR: VP0709 339222 VP0710 treB 339223 VP0711 treC # TF - VIBHAR_07005: VPA0034 341626 VPA0034 VIBHAR_07005 341625 VPA0033 XAC1547 341624 VPA0032 XAC1546 # TF - VP2396: VP2396 340908 VP2396 VP2396 340907 VP2395 GH5 340906 VP2394 VP2394 # TF - MetR: VP1976 339227 VP0715 glyA 341275 VP2763 metF 340487 VP1975 null 340488 VP1976 metR 340486 VP1974 metE 340504 VP1992 PF08908 340503 VP1991 metE2 # TF - TyrR: VP1869 339058 VP0546 aroF 339059 VP0547 tyrA 342167 VPA0575 acsA 339861 VP1349 hpd 339862 VP1350 hmgA 339863 VP1351 hmgC 339864 VP1352 hmgB 339938 VP1426 tyrP 339696 VP1184 COG0733 342168 VPA0576 phhA 342169 VPA0577 phhB 342777 VPA1185 aroG # TF - YdcR: VPA1136, VP1896 340406 VP1894 null 341564 VP3052 COG0348 342729 VPA1137 PF01654 342730 VPA1138 PF02322 # TF - VEA_000881: VPA0118 341711 VPA0119 PF00892 # TF - PdxW: VPA1237 342830 VPA1238 pdxO # TF - PhsR: VP1202 339713 VP1201 phsS 339714 VP1202 phsR 339712 VP1200 sirA 339711 VP1199 sirC 339710 VP1198 sirB 339709 VP1197 yceA # TF - SdaR: VPA0115 341708 VPA0116 grtP 341709 VPA0117 garK # TF - TtrR: VP2009 340524 VP2011 ttrC 340522 VP2010 ttrS 340521 VP2009 ttrR # TF - PhrR: VPA1472 343065 VPA1473 COG3272 343064 VPA1472 phrR 343063 VPA1471 phr 343062 VPA1470 ykuD 339631 VP1119 PF07366 339632 VP1120 PF00106 339633 VP1121 PF01593 339634 VP1122 PF07103 339635 VP1123 PF02353 339636 VP1124 PF11086 339637 VP1125 FIG026291 339638 VP1126 FIG002577