# TF - TrpR: VV1_0489 311098 VV1_3064 trpE 311099 VV1_3065 trpD_a 311100 VV1_3066 trpD_b 311101 VV1_3067 trpC 311102 VV1_3068 trpB 311103 VV1_3069 trpA 312024 VV20854 tnaA 312025 VV20855 tnaB 309950 VV1_1834 COG0733 # TF - FabR: VV1_1169 310081 VV1_1971 fadL 310687 VV1_2629 fabA 309240 VV1_1043 hyIII 308871 VV1_0649 lcfH 311292 VV20069 OLE1 # TF - NsrR: VV1_1302 309467 VV1_1302 nsrR 309900 VV1_1781 nnrS 309466 VV1_1301 hmp # TF - BirA: VV1_1198 310984 VV1_2943 bioB 310983 VV1_2942 bioF 310982 VV1_2941 bioC 310981 VV1_2940 bioD 310985 VV1_2944 bioA 310986 VV1_2945 bioA # TF - HexR: VV1_2825 309446 VV1_1281 gpmM 309528 VV1_1369 ppc 308683 VV1_0450 aceB 308682 VV1_0449 aceA 309094 VV1_0881 pckA 310275 VV1_2181 ygaW 308572 VV1_0333 pepD 308780 VV1_0553 gltB 308781 VV1_0554 gltD 311170 VV1_3140 gapA 311575 VV20370 nirB 311574 VV20369 nirD 308861 VV1_0638 mtlA 308862 VV1_0639 mtlD 308863 VV1_0640 mtlR 311524 VV20317 pntA 311523 VV20316 pntB 311522 VV20315 pntB 309555 VV1_1396 pgi 310193 VV1_2095 pflA 308769 VV1_0542 grcA 311036 VV1_2999 ptsG 309507 VV1_1343 tpiA # TF - ArgR: VV1_0674 309478 VV1_1313 argD 309479 VV1_1314 astA 309480 VV1_1315 astD 309616 VV1_1467 arcA 311987 VV20815 artP 311988 VV20816 artI 311989 VV20817 artQ 311990 VV20818 artM 309533 VV1_1374 argH 309530 VV1_1371 argC 309531 VV1_1372 argB 309532 VV1_1373 argG 309529 VV1_1370 argE 309917 VV1_1799 argA 308793 VV1_0566 carA 308792 VV1_0565 carB 309615 VV1_1466 argF # TF - NrtR: VV1_2373 310457 VV1_2373 nrtR 310458 VV1_2374 pncA 310456 VV1_2372 pncB # TF - NrdR: VV1_0324 311544 VV20337 nrdD 311543 VV20336 nrdG 311075 VV1_3041 nrdA 311076 VV1_3042 nrdB 311077 VV1_3043 yfaE # TF - Zur 308595 VV1_0360 omr 308594 VV1_0359 znuA2 308593 VV1_0358 znuB2 309956 VV1_1840 rpmE2 310324 VV1_2234 ribA 308399 VV1_0151 znuA 308937 VV1_0717 zbp 308400 VV1_0152 znuC 308401 VV1_0153 znuB 308937 VV1_0717 zbp 308938 VV1_0719 VV1_0719 308939 VV1_0720 VC2554 308940 VV1_0721 VC2555 # TF - PdhR: VV1_1629 309758 VV1_1629 pdhR 309759 VV1_1630 aceE 309760 VV1_1631 aceF 309761 VV1_1632 lpdA # TF - FadR: VV1_2233 310687 VV1_2629 fabA 310085 VV1_1975 fadI 310086 VV1_1976 fadJ 310082 VV1_1972 fadL 311163 VV1_3132 fadH 310007 VV1_1896 fadE2 309346 VV1_1165 plsB 309181 VV1_0981 fadB 309182 VV1_0982 fadA # TF - NorR: VV21342 312476 VV21342 norR1 312477 VV21343 norV 312478 VV21344 norW 312479 VV21345 tehB # TF - PrpR: VV1_2733 310788 VV1_2733 prpR 310787 VV1_2732 prpB 310786 VV1_2731 prpC 310785 VV1_2730 acnD 310784 VV1_2729 prpF 310783 VV1_2728 prpE # TF - HutC: VV1_2393 310476 VV1_2392 hutI 310475 VV1_2391 hutG2 310474 VV1_2390 hutU 310473 VV1_2389 hutH 310477 VV1_2393 hutC # TF - IscR: VV1_0439 309077 VV1_0864 nfuA 308672 VV1_0439 iscR 308671 VV1_0438 iscS 308670 VV1_0437 iscU 308669 VV1_0436 iscA 308668 VV1_0435 hscB 308667 VV1_0434 hscA 308666 VV1_0433 fdx 308665 VV1_0432 yfhJ 309805 VV1_1679 erpA # TF - NagC: VV1_0181 310867 VV1_2820 tfoX1 311170 VV1_3140 gapA 311171 VV1_3141 aldE 308452 VV1_0205 ybfM 309221 VV1_1023 glmU 311865 VV20680 null 311866 VV20681 null 312437 VV21298 null 312438 VV21300 null 311432 VV20213 chiD 309801 VV1_1674 chiS 311036 VV1_2999 ptsG 309712 VV1_1578 pyrG 309713 VV1_1579 eno 311605 VV20402 mcp2 309648 VV1_1511 mcp 309647 VV1_1510 mcp 310232 VV1_2136 tfoX 308650 VV1_0417 chi 308457 VV1_0210 ptsH 308458 VV1_0211 ptsI 308459 VV1_0212 crr 312344 VV21200 nagB 312361 VV21217 chiA 309675 VV1_1540 pgk 309676 VV1_1541 fbaA 308426 VV1_0179 nagE1 308488 VV1_0241 hex 308427 VV1_0180 nagA 308428 VV1_0181 nagC # TF - NtrC: VV1_0892 309785 VV1_1658 glnK 309786 VV1_1659 amtB 309104 VV1_0891 ntrB 309105 VV1_0892 ntrC 309102 VV1_0889 glnA # TF - Fur: VV1_0175 309348 VV1_1167 COG3315 312002 VV20831 vibF 312001 VV20830 VV20830 311134 VV1_3101 PF10952 309418 VV1_1252 sodA 309170 VV1_0966 COG2132 310933 VV1_2889 PF11449 312166 VV21010 VV21010 312167 VV21011 fhuC 312168 VV21012 fhuD 312169 VV21013 fhuB 312721 VV21615 hutW 312722 VV21616 huvX 312723 VV21617 hutZ 311569 VV20364 PF11932 311568 VV20363 exbB1 311567 VV20362 exbB2 311566 VV20361 exbD2 311565 VV20360 tonB 311564 VV20359 VC1543 312014 VV20844 vibH 312472 VV21338 VV21338 311966 VV20793 VV20793 311967 VV20794 VV20794 312009 VV20839 VV20839 312008 VV20838 VC0771 312007 VV20837 viuB 308397 VV1_0149 feoA 308396 VV1_0148 feoB 308395 VV1_0147 feoC 312005 VV20835 VC0773 312006 VV20836 VC0772 312471 VV21337 fhuA 309299 VV1_1113 VC0074 310932 VV1_2888 ppaC 310126 VV1_2020 COG3016 312011 VV20841 null 312012 VV20842 vctP 312171 VV21016 iutA 310704 VV1_2646 VV1_2646 310705 VV1_2647 pqiA 310706 VV1_2648 pqiB 311489 VV20277 VCA0575 312658 VV21548 ptrB 312659 VV21549 hutR 312660 VV21550 VCA0065 312661 VV21551 VCA0066 312662 VV21552 VCA0067 311068 VV1_3034 nrfB 311067 VV1_3033 nfrC 311066 VV1_3032 nrfD 312720 VV21614 tonB-hmu 312719 VV21613 exbB-hmu 312718 VV21612 exbD-hmu 312717 VV21611 hmuT 312716 VV21610 hmuU 312715 VV21609 hmuV 311009 VV1_2968 irpA 312322 VV21178 VV21178 312321 VV21177 VV21177 312320 VV21176 VCA0003 309787 VV1_1660 fbpA 309788 VV1_1661 fbpA 309789 VV1_1662 fbpB 309790 VV1_1663 fbpC 312004 VV20834 VC0774 312013 VV20843 viuA 312665 VV21555 torS 312618 VV21506 null 309504 VV1_1340 bfd 309505 VV1_1341 bfr 311335 VV20115 VCA0743 311762 VV20569 VCA1041 311761 VV20568 VV20568 311760 VV20567 VV20567 311759 VV20566 VV20566 311758 VV20565 VV20565 # TF - UxuR: VV21065 312221 VV21067 uxuQ 312222 VV21068 uxuM 312223 VV21069 uxuB 312224 VV21070 uxaC 312225 VV21071 kdgK 312226 VV21072 eda 312227 VV21073 ygjV 312220 VV21066 uxuP 312219 VV21065 uxuR 312218 VV21064 uxuA # TF - KdgR: VV20915 312078 VV20914 kduD 312077 VV20913 ygjV 312076 VV20912 kdgF 312075 VV20911 spiX 312258 VV21106 null 312260 VV21108 null 312261 VV21109 null 312079 VV20915 kdgR 312259 VV21107 null 312245 VV21092 ugl 312244 VV21091 VV21091 312243 VV21090 cslA 312069 VV20905 kdgK 312068 VV20904 eda # TF - FruR: VV20201 311419 VV20200 fruB 311418 VV20199 fruK 311417 VV20198 fruA 311420 VV20201 fruR # TF - PurR: VV1_2138 310128 VV1_2022 folD 310846 VV1_2797 purC 309251 VV1_1054 purE 309250 VV1_1053 purK 310011 VV1_1900 purM 310010 VV1_1899 purN 310970 VV1_2928 purB 309069 VV1_0856 xanP 310966 VV1_2924 gsk 309395 VV1_1227 purH 309394 VV1_1226 purD 308494 VV1_0248 ushA 311435 VV20217 fhs 311434 VV20216 fhs 308577 VV1_0340 purL 310462 VV1_2378 purT 310012 VV1_1901 upp 310104 VV1_1996 cvpA 310105 VV1_1997 purF 308529 VV1_0286 glyA # TF - RbsR: VV20066 311284 VV20061 rbsD 311285 VV20062 rbsA 311286 VV20063 rbsC 311287 VV20064 rbsB 311288 VV20065 rbsK 311289 VV20066 rbsR # TF - NanR (SiaQ): VV20729 311913 VV20734 nanE 311914 VV20735 nanK 311915 VV20736 nagA 311912 VV20733 siaP 311911 VV20732 siaS 311910 VV20731 siaT 311909 VV20730 nanA 311908 VV20729 nanR 311907 VV20727 nanM 311906 VV20726 nanM # TF - AgaR: VV21025 312180 VV21025 agaR 312179 VV21024 agaZ 312178 VV21023 agaS 312177 VV21022 agaV 312176 VV21021 agaW 312175 VV21020 agaE 312174 VV21019 agaF 312173 VV21018 agaA 312172 VV21017 agaY # TF - LexA: VV1_1166 309347 VV1_1166 lexA 309724 VV1_1591 recA 309725 VV1_1592 recX 311161 VV1_3130 topB 308601 VV1_0367 recN 309122 VV1_0910 rmuC 310845 VV1_2796 VC1191 311125 VV1_3092 uvrB 310485 VV1_2401 intIA 311026 VV1_2987 imuA 311027 VV1_2988 imuB 311028 VV1_2989 dnaE2 310383 VV1_2297 VC1368 308623 VV1_0390 umuD 308624 VV1_0391 umuC 309067 VV1_0854 recG 309068 VV1_0855 recG 308749 VV1_0521 mutH 309946 VV1_1830 dinB 310254 VV1_2159 ruvA 310255 VV1_2160 ruvB 310256 VV1_2161 ruvB 309577 VV1_1427 uvrA 309154 VV1_0949 uvrD 309909 VV1_1791 yebG # TF - LiuR: VV20495 311674 VV20476 etfD 311673 VV20474 etfB 311672 VV20473 etfA 311692 VV20494 ivdA 311691 VV20493 ivdB 311690 VV20492 ivdC 311689 VV20491 ivdD 311688 VV20490 ivdE 311687 VV20489 ivdF 311686 VV20488 ivdG 311693 VV20495 liuR 311694 VV20496 liuA 311695 VV20497 liuB 311696 VV20498 liuC 311697 VV20499 liuE 311698 VV20500 liuE # TF - PsrA: VV1_2832 311163 VV1_3132 fadH 309181 VV1_0981 fadB 309182 VV1_0982 fadA 310085 VV1_1975 fadI 310086 VV1_1976 fadJ 310879 VV1_2832 psrA 310878 VV1_2831 fadE 310877 VV1_2830 fadE 308683 VV1_0450 mdh 308384 VV1_0136 fadD # TF - PhnR: VV21671 312769 VV21664 phnW 312768 VV21663 COG0160 312767 VV21662 phnX 312773 VV21669 phnT 312774 VV21670 phnU 312775 VV21671 phnR 312776 VV21672 VCA0599 312777 VV21673 null 312770 VV21665 phnS # TF - NorR2: VV1_2863 310908 VV1_2863 norR2 310909 VV1_2864 hcp 310910 VV1_2865 hcr # TF - EbgR: VV1_1769 309890 VV1_1769 ebgR 309888 VV1_1767 ebgA 309887 VV1_1766 ebgC 309886 VV1_1765 ygjI 309885 VV1_1764 ygjI 309884 VV1_1763 SSF48208 # RNA - MOCO_RNA_motif 311121 VV1_3088 moaA 311120 VV1_3087 moaB 311119 VV1_3086 moaC 311118 VV1_3085 moaD 311117 VV1_3084 moaE # RNA - FMN 312552 VV21426 ribB # RNA - Trp_leader 311098 VV1_3064 trpE 311099 VV1_3065 trpG 311100 VV1_3066 trpD 311101 VV1_3067 trpC 311102 VV1_3068 trpB 311103 VV1_3069 trpA # RNA - yybP-ykoY 309188 VV1_0988 COG2119 311702 VV20505 COG0530 311453 VV20239 ykoY # RNA - Purine 311668 VV20468 add # RNA - Lysine 310964 VV1_2922 lysW 309574 VV1_1424 lysC # RNA - Leu_leader 308876 VV1_0654 leuA 308877 VV1_0655 leuB 308878 VV1_0656 leuC 308879 VV1_0657 leuD # RNA - TPP 309168 VV1_0964 thiC 309167 VV1_0963 thiE 309166 VV1_0962 thiF 309165 VV1_0961 thiS 309164 VV1_0960 thiG 309163 VV1_0959 thiH 308924 VV1_0703 thiB 308923 VV1_0702 thiP 308922 VV1_0701 thiQ 312559 VV21433 thiD # RNA - GEMM_RNA_motif 310232 VV1_2136 tfoX 311268 VV20044 cbp # RNA - S15 309827 VV1_1701 rpsO # RNA - Glycine 310751 VV1_2695 glyP # RNA - Thr_leader 308772 VV1_0545 thrA 308771 VV1_0544 thrB 308770 VV1_0543 thrC # RNA - Cobalamin 309354 VV1_1173 btuB 309355 VV1_1174 COG2102 309356 VV1_1175 COG0796 # RNA - His_leader 310963 VV1_2920 hisG 310962 VV1_2919 hisD 310961 VV1_2918 hisC 310960 VV1_2917 hisB 310959 VV1_2916 hisH 310958 VV1_2915 hisA 310957 VV1_2914 hisF 310956 VV1_2913 hisI # TF - NarP: VV20718 311143 VV1_3111 adhE 311902 VV20720 napD 311903 VV20721 napA 311904 VV20722 napB 311905 VV20723 napC 309415 VV1_1249 aspA 309414 VV1_1248 dcuA 311121 VV1_3088 moaA 311120 VV1_3087 moaB 311119 VV1_3086 moaC 311118 VV1_3085 moaD 311117 VV1_3084 moaE 311575 VV20370 nirB 311574 VV20369 nirD 311573 VV20368 nirC 311572 VV20367 cysG 311068 VV1_3034 nrfB 311067 VV1_3033 nfrC 311066 VV1_3032 nrfD 311065 VV1_3031 nrfE 311064 VV1_3030 nrfX 311596 VV20393 nrtC 311595 VV20392 nrtB 311594 VV20391 nrtD 311593 VV20390 nirB4 311592 VV20389 nirD4 310196 VV1_2098 pflB 310071 VV1_1961 ccmA 310072 VV1_1962 ccmB 310073 VV1_1963 ccmC 310074 VV1_1964 ccmD 310075 VV1_1965 ccmE 310076 VV1_1966 ccmF 310077 VV1_1967 ccmG 310078 VV1_1968 ccmH 310079 VV1_1969 ccmH 311069 VV1_3035 nrfA 311901 VV20719 narQ 311900 VV20718 narP # TF - GntR: VV1_1098 309286 VV1_1098 gntR 309288 VV1_1100 gntK 309287 VV1_1099 edd 309289 VV1_1101 gntU 309290 VV1_1102 eda # TF - SoxR: VV20936 312098 VV20936 soxR 312099 VV20937 PF07690 311799 VV20607 PF00903 311798 VV20606 PF00903 312277 VV21129 wrbA # TF - ZntR: VV1_1229 310162 VV1_2063 zntA # TF - CueR: VV20113 308486 VV1_0239 copA 308487 VV1_0240 copG 312019 VV20849 VCA0262 312020 VV20850 cusC 312021 VV20851 cusB 312022 VV20852 cusA 312023 VV20853 cusF 311276 VV20052 PF00034 # TF - MetJ: VV1_1362 310824 VV1_2772 metA 309354 VV1_1173 btuB 309524 VV1_1364 metB 309525 VV1_1365 metL 308535 VV1_0292 metN 308536 VV1_0293 metI 308537 VV1_0294 metQ 309573 VV1_1423 metH 309523 VV1_1362 metJ 312645 VV21534 mtsA 312644 VV21533 mtsB 312643 VV21532 mtsC 310856 VV1_2808 csd 309526 VV1_1366 metF 309672 VV1_1536 metK 310309 VV1_2218 metR 310310 VV1_2219 metE # TF - GalR: VV1_1775, VV21323 309896 VV1_1775 galR 312464 VV21329 lacP 312463 VV21328 VV21328 312462 VV2_1327 lacZ 312461 VV21326 mglB 312460 VV21325 mglA 312459 VV21324 mglC 312466 VV21332 galW 312786 VV21682 VV21682 309891 VV1_1770 galE 309892 VV1_1771 galT # TF - SgaR: VV20859 312030 VV20860 sgaA 312031 VV20861 sgaB 312032 VV2_0862 sgaT 312029 VV20859 sgaR # TF - VF_1255: VV21060 312215 VV21061 nhaX 312216 VV21062 malY # TF - CelR: VV1_1487 309631 VV1_1482 celB 309632 VV1_1483 celD 309633 VV1_1484 celA 309634 VV1_1485 bglA 309635 VV1_1486 celE 309636 VV1_1487 celR 309630 VV1_1481 celG # TF - BglR: VV21282 312421 VV21281 bglP 312422 VV21282 bglR 312423 VV21283 bglE 312424 VV21284 bglF 312425 VV21286 bglG 312426 VV21287 bglB 312427 VV21288 bglK # TF - TreR: VV1_0290 308532 VV1_0289 treB 308531 VV1_0288 treC # TF - PhrR: VV21542 312652 VV21541 COG3272 312653 VV21542 phrR 312654 VV21543 phr 312655 VV21544 ykuD 310978 VV1_2936 PF07366 310977 VV1_2935 PF00106 310976 VV1_2934 PF01593 310975 VV1_2933 PF07103 310974 VV1_2932 PF02353 310973 VV1_2931 PF11086 310972 VV1_2930 FIG026291 310971 VV1_2929 FIG002577 # TF - VVA0138: VV21297 312435 VV21296 VV21296 312436 VV21297 VV21297 312437 VV21298 VV21298 312438 VV21300 VV21300 312439 VV21301 VV21301 # TF - MetR: VV1_2218 308529 VV1_0286 glyA 312156 VV20997 PF08908 312155 VV20996 metE2 310310 VV1_2219 metE 309526 VV1_1366 metF 310309 VV1_2218 metR # TF - TyrR: VV1_2270 310914 VV1_2869 COG0733 308530 VV1_0287 COG1284 308724 VV1_0495 aroF 308723 VV1_0494 tyrA 310379 VV1_2293 tyrP 311656 VV20455 phhA 311655 VV20454 phhB 311752 VV20558 aroG 311657 VV2_0456 acsA 310821 VV1_2768 hpd 310820 VV1_2767 hmgA 310819 VV1_2766 hmgC 310818 VV1_2765 hmgB # TF - YdcR: VV1_2252 310342 VV1_2253 null 309236 VV1_1038 COG0348 # TF - VEA_000881: VV21401 312530 VV21402 PF00892 # TF - VV21354: VV21354 312489 VV21355 PF00892 # TF - PdxW: VV20776 311952 VV20777 pdxO # TF - SdaR: VV1_1656 309782 VV1_1655 grtP 309781 VV1_1654 garK