# TF - Bcep18194_A4479: Bcep18194_A4479 1063740 Bcep18194_B2804 COG-RimI 1058857 Bcep18194_A4480 COG436 (PF00155) # TF - NsrR: Bcep18194_A5149 1062058 Bcep18194_B1121 hcp 1062059 Bcep18194_B1122 hcr 1058187 Bcep18194_A3823 hmp # TF - HexR: Bcep18194_A3745 1058108 Bcep18194_A3745 hexR 1058433 Bcep18194_A4070 zwf 1058432 Bcep18194_A4069 pgl 1058431 Bcep18194_A4068 glk 1058109 Bcep18194_A3746 edd 1058110 Bcep18194_A3747 eda # TF - NrdR: Bcep18194_A3896 1058042 Bcep18194_A3679 nrdA 1058043 Bcep18194_A3680 nrdB # TF - Zur: Bcep18194_A5930 1060336 Bcep18194_A5930 zur 1060337 Bcep18194_A5931 znuA 1060338 Bcep18194_A5932 znuC 1060339 Bcep18194_A5933 znuB 1061249 Bcep18194_B0316 yciC 1061250 Bcep18194_B0317 folE2 1061251 Bcep18194_B0318 queD2 1061252 Bcep18194_B0319 can2 1061253 Bcep18194_B0320 pyrC2 1058866 Bcep18194_A4489 omr1 1058867 Bcep18194_A4490 fecE 1058868 Bcep18194_A4491 fecC 1058869 Bcep18194_A4492 fecD 1062461 Bcep18194_B1524 omr # TF - LldR: Bcep18194_A6080 1060487 Bcep18194_A6080 lldR 1060488 Bcep18194_A6081 lldE 1060489 Bcep18194_A6082 lldG 1060490 Bcep18194_A6083 lldF 1060491 Bcep18194_A6084 lldP # TF - HutC: Bcep18194_B0075, Bcep18194_B2386, Bcep18194_A5481 1058758 Bcep18194_A4383 COG1457 (CodB) 1061006 Bcep18194_B0073 COG834 (HisJ) 1061007 Bcep18194_B0074 COG5285 1063313 Bcep18194_B2378 hisJ 1063312 Bcep18194_B2377 hisQ 1063311 Bcep18194_B2376 hisM 1063310 Bcep18194_B2375 hisP 1059878 Bcep18194_A5482 hutH 1059877 Bcep18194_A5481 hutC 1059876 Bcep18194_A5480 hutU 1059875 Bcep18194_A5479 hutD 1059874 Bcep18194_A5478 hutI 1059873 Bcep18194_A5477 hutF 1059872 Bcep18194_A5476 hutG 1059879 Bcep18194_A5483 COG834 (HisJ) 1058695 Bcep18194_A4320 hisT # TF - IscR: Bcep18194_A5433 1059827 Bcep18194_A5433 iscR 1059826 Bcep18194_A5432 iscS 1059825 Bcep18194_A5431 iscU 1059824 Bcep18194_A5430 iscA 1059823 Bcep18194_A5429 hscB 1059822 Bcep18194_A5428 hscA 1059821 Bcep18194_A5427 fdx 1059820 Bcep18194_A5426 yfhJ # TF - NagQ: Bcep18194_A6155 1060563 Bcep18194_A6155 nagQ 1060562 Bcep18194_A6154 nagA 1060561 Bcep18194_A6153 nagB2 1060560 Bcep18194_A6152 ptsI 1060559 Bcep18194_A6151 nagE # TF - GlcC: Bcep18194_B0034 1060967 Bcep18194_B0034 glcC 1060966 Bcep18194_B0033 null 1060965 Bcep18194_B0032 glcE 1060964 Bcep18194_B0031 glcF 1060963 Bcep18194_B0030 glcG 1060962 Bcep18194_B0029 glcB # TF - NtrC: Bcep18194_A5456 1058685 Bcep18194_A4310 amtB 1062280 Bcep18194_B1343 narK 1062281 Bcep18194_B1344 nasD 1062282 Bcep18194_B1345 nasE 1062283 Bcep18194_B1346 nasBA 1059853 Bcep18194_A5458 glnA 1059852 Bcep18194_A5457 ntrB 1059851 Bcep18194_A5456 ntrC # TF - RbsR: Bcep18194_A4748 1059128 Bcep18194_A4745 rbsB 1059129 Bcep18194_A4746 rbsA 1059130 Bcep18194_A4747 rbsC 1059131 Bcep18194_A4748 rbsR 1059132 Bcep18194_A4749 rbsK # TF - ModE: Bcep18194_B2239 1063171 Bcep18194_B2236 modA 1063172 Bcep18194_B2237 modB 1063173 Bcep18194_B2238 modC # TF - LexA: Bcep18194_A4738 1058550 Bcep18194_A4180 PF04055 1064116 Bcep18194_B3181 PF10616 1057134 Bcep18194_C7351 uvrA 1059121 Bcep18194_A4738 lexA 1060385 Bcep18194_A5979 recA 1060384 Bcep18194_A5978 recX 1062816 Bcep18194_B1879 BPSS1334 1060566 Bcep18194_A6158 imuA 1060565 Bcep18194_A6157 imuB 1060564 Bcep18194_A6156 dnaE2 1059842 Bcep18194_A5448 dinB 1062568 Bcep18194_B1631 PF08774 1062567 Bcep18194_B1630 PF06733 # TF - PsrA: Bcep18194_A4675 1058605 Bcep18194_A4233 fabH 1058606 Bcep18194_A4234 fabD 1058607 Bcep18194_A4235 fabG 1058608 Bcep18194_A4236 acpP 1058609 Bcep18194_A4237 fabF 1059053 Bcep18194_A4675 psrA 1059052 Bcep18194_A4674 fadD # TF - RutR: Bcep18194_C6653 1056437 Bcep18194_C6654 pydC 1056438 Bcep18194_C6655 pydX 1056439 Bcep18194_C6656 pydA 1056440 Bcep18194_C6657 pydP 1056441 Bcep18194_C6658 pydB 1056436 Bcep18194_C6653 rutR # TF - FadP: Bcep18194_A6049 1058983 Bcep18194_A4606 etfD 1060296 Bcep18194_A5890 fadD2 1057995 Bcep18194_A3633 fadD1 1060456 Bcep18194_A6049 fadP 1060455 Bcep18194_A6048 acdH 1060454 Bcep18194_A6047 acdB 1060453 Bcep18194_A6046 acdA 1060452 Bcep18194_A6045 echH 1059590 Bcep18194_A5207 fadB 1059589 Bcep18194_A5206 pncA 1059588 Bcep18194_A5205 fadA 1060723 Bcep18194_A6315 nppD 1058545 Bcep18194_A4175 etfB 1058546 Bcep18194_A4176 etfA 1058547 Bcep18194_A4177 acdH2 1062846 Bcep18194_B1909 null 1059963 Bcep18194_A5561 null 1059962 Bcep18194_A5560 acdQ 1059961 Bcep18194_A5559 acdP 1059960 Bcep18194_A5558 maoC 1059959 Bcep18194_A5557 echI 1058850 Bcep18194_A4473 acdH3 # TF - LiuQ: Bcep18194_B0422 1061360 Bcep18194_B0422 liuQ 1061361 Bcep18194_B0423 liuA 1061362 Bcep18194_B0424 liuB 1061363 Bcep18194_B0425 liuC 1061364 Bcep18194_B0426 liuD # TF - PaaR: Bcep18194_A3423 1062254 Bcep18194_B1317 paaH 1062255 Bcep18194_B1318 paaK2 1062256 Bcep18194_B1319 paaF2 1057987 Bcep18194_A3630 paaZ 1057986 Bcep18194_A3629 paaJ 1057985 Bcep18194_A3628 paaF 1057984 Bcep18194_A3627 paaY 1057983 Bcep18194_A3626 paaK 1057988 Bcep18194_A3631 paaG 1057776 Bcep18194_A3429 paaA 1057775 Bcep18194_A3428 paaB 1057774 Bcep18194_A3427 paaC 1057773 Bcep18194_A3426 paaD 1057772 Bcep18194_A3425 paaE 1057771 Bcep18194_A3424 paaW 1057770 Bcep18194_A3423 paaR # RNA - FMN 1062462 Bcep18194_B1525 ribH 1060423 Bcep18194_A6016 ribB # RNA - TPP 1057864 Bcep18194_A3508 thiO 1057865 Bcep18194_A3509 thiS 1057866 Bcep18194_A3510 thiG 1057867 Bcep18194_A3511 thiE 1058706 Bcep18194_A4331 thiC # RNA - Cobalamin 1059207 Bcep18194_A4824 cobG 1059206 Bcep18194_A4823 cbiC 1059205 Bcep18194_A4822 cbiL 1059204 Bcep18194_A4821 cbiGH 1061297 Bcep18194_B0359 bglu_2g19320 1061298 Bcep18194_B0360 cbtA 1059188 Bcep18194_A4805 cobW 1059189 Bcep18194_A4806 cobN 1059190 Bcep18194_A4807 chlI 1059191 Bcep18194_A4808 chlD 1060191 Bcep18194_A5786 btuC 1060190 Bcep18194_A5785 btuD 1060189 Bcep18194_A5784 cobT 1060188 Bcep18194_A5783 cobS 1060187 Bcep18194_A5782 cobC 1062422 Bcep18194_B1485 btuB1 1059185 Bcep18194_A4802 cysG 1059184 Bcep18194_A4801 cbiG 1059183 Bcep18194_A4800 btuR 1059182 Bcep18194_A4799 cbiA # RNA - SAH_riboswitch 1057721 Bcep18194_A3375 ahcY 1057722 Bcep18194_A3376 PF04020 1057723 Bcep18194_A3377 metF # RNA - Glycine 1057670 Bcep18194_A3325 gcvT 1057669 Bcep18194_A3324 gcvH 1057668 Bcep18194_A3323 gcvP 1057667 Bcep18194_A3322 null 1057666 Bcep18194_A3321 sdaA # RNA - yybP-ykoY 1063706 Bcep18194_B2770 COG0530 1058497 Bcep18194_A4128 COG2119 # RNA - mini-ykkC 1060012 Bcep18194_A5609 ykkC # RNA - sucA 1059027 Bcep18194_A4649 sucA 1059028 Bcep18194_A4650 sucB 1059029 Bcep18194_A4651 lpdA # TF - HrcA 1060553 Bcep18194_A6145 rpoH 1058317 Bcep18194_A3954 groS 1058318 Bcep18194_A3955 groL # TF - NmlR: Bcep18194_A5145 1063645 Bcep18194_B2709 PF00724 1059528 Bcep18194_A5145 nmlR 1059527 Bcep18194_A5144 pcaC # TF - SoxR: Bcep18194_B1003 1061940 Bcep18194_B1003 soxR 1061941 Bcep18194_B1004 cmeA 1061942 Bcep18194_B1005 cmeB 1061943 Bcep18194_B1006 cmeC 1062264 Bcep18194_B1327 PF07690 1062265 Bcep18194_B1328 PF11811 # TF - CueR: Bcep18194_A5545 1060746 Bcep18194_A6338 copZ # TF - CadR-PbrR: Bcep18194_A3303 1057649 Bcep18194_A3304 cadA # TF - Bamb_4155: Bcep18194_B0942 1061876 Bcep18194_B0939 Bamb_4158 1061877 Bcep18194_B0940 Bamb_4157 1061878 Bcep18194_B0941 Bamb_4156 # TF - PtxS: Bcep18194_A5026 1059412 Bcep18194_A5030 kguE 1059411 Bcep18194_A5029 kguK 1059410 Bcep18194_A5028 kguT 1059409 Bcep18194_A5027 kguD 1062731 Bcep18194_B1794 gadC 1062730 Bcep18194_B1793 gadB 1062729 Bcep18194_B1792 gadA # TF - Bphy_4590: Bcep18194_C7624 1057407 Bcep18194_C7624 Bphy_4590 1057406 Bcep18194_C7623 Bphy_4591 1057405 Bcep18194_C7622 Bphy_4592 1057404 Bcep18194_C7621 COG0329 # TF - Bamb_2736: Bcep18194_A6011 1060419 Bcep18194_A6012 SSF51658 1060420 Bcep18194_A6013 COG4130 1060421 Bcep18194_A6014 iolG 1060418 Bcep18194_A6011 Bamb_2736 # TF - Bphy_6994: Bcep18194_B1311 1062246 Bcep18194_B1309 Bphy_6992 1062247 Bcep18194_B1310 Bphy_6993 1062248 Bcep18194_B1311 Bphy_6994 1062249 Bcep18194_B1312 PF00389 1062250 Bcep18194_B1313 PF04909 # TF - GabR: Bcep18194_B0281, Bcep18194_B2171 1063104 Bcep18194_B2170 gbtA 1063103 Bcep18194_B2169 gbtD 1063102 Bcep18194_B2168 gbtB 1063101 Bcep18194_B2167 gbtC 1061213 Bcep18194_B0280 gabT 1061212 Bcep18194_B0279 gabD # TF - BPSL1304: Bcep18194_A4344 1058719 Bcep18194_A4344 BPSL1304 1058718 Bcep18194_A4343 RSc1791 1058717 Bcep18194_A4342 RSc1792 1058716 Bcep18194_A4341 RSc1793 1058715 Bcep18194_A4340 RSc1794 1058714 Bcep18194_A4339 RSc1795 # TF - FdsR: Bcep18194_A4147 1058515 Bcep18194_A4146 fdsG 1058514 Bcep18194_A4145 fdsB 1058513 Bcep18194_A4144 fdsA 1058512 Bcep18194_A4143 fdsD 1058516 Bcep18194_A4147 fdsR # TF - PhnR2: Bcep18194_A6499 1060909 Bcep18194_A6499 phnR2 1060904 Bcep18194_A6494 Bcep18194_A6494 1060905 Bcep18194_A6495 Bcep18194_A6495 1060906 Bcep18194_A6496 Bcep18194_A6496 1060907 Bcep18194_A6497 Bamb_3195 1060908 Bcep18194_A6498 Bamb_3196 1060903 Bcep18194_A6493 phnA 1060902 Bcep18194_A6492 Bamb_3193 # TF - Bamb_1959: Bcep18194_A5286 1059671 Bcep18194_A5285 Bamb_1958 1059672 Bcep18194_A5286 Bamb_1959 1059673 Bcep18194_A5287 PA2298 1059674 Bcep18194_A5288 PA2297 1059675 Bcep18194_A5289 PA2293 1059676 Bcep18194_A5290 PA2292 # TF - UraR: Bcep18194_A5281 1059667 Bcep18194_A5281 uraR 1059666 Bcep18194_A5280 pbuT 1059665 Bcep18194_A5279 hyuE 1059664 Bcep18194_A5278 COG0726 1059663 Bcep18194_A5277 uraO 1059662 Bcep18194_A5276 allC 1059661 Bcep18194_A5275 allA # TF - UreR: Bcep18194_A3731 1058095 Bcep18194_A3732 dctA 1058096 Bcep18194_A3733 allH 1058097 Bcep18194_A3734 ureH 1058094 Bcep18194_A3731 ureR # TF - MetR: Bcep18194_C7372, Bcep18194_B0361 1057153 Bcep18194_C7370 PF08908 1057152 Bcep18194_C7369 metE2 1061299 Bcep18194_B0361 metR 1057155 Bcep18194_C7372 metR2 1061300 Bcep18194_B0362 metE # TF - TauR: Bcep18194_B1990 1062928 Bcep18194_B1992 tauX 1062929 Bcep18194_B1993 xsc 1062930 Bcep18194_B1994 pta 1062931 Bcep18194_B1995 tauE 1062925 Bcep18194_B1989 rimI 1062924 Bcep18194_B1988 phnY 1062939 Bcep18194_B2003 tauY 1062938 Bcep18194_B2002 gabP # TF - PdxW: Bcep18194_B1330, Bcep18194_B2202 1062266 Bcep18194_B1329 PF00583 1063853 Bcep18194_B2917 PF00583 # TF - BPSL1086: Bcep18194_A5687 1064057 Bcep18194_B3122 PF01810 1060091 Bcep18194_A5688 BMA1950 1060092 Bcep18194_A5689 PF00892 1060093 Bcep18194_A5690 aspB 1060094 Bcep18194_A5691 COG251 (TdcF) 1060095 Bcep18194_A5692 COG384 (PhzF) # TF - Bamb_4265: Bcep18194_B0828 1061766 Bcep18194_B0829 COG697 # TF - ModE2: Bcep18194_B2794 1057509 Bcep18194_C7726 mopI 1057510 Bcep18194_C7727 nifQ 1063731 Bcep18194_B2795 Bxe_B1193 1063730 Bcep18194_B2794 modE2 # TF - PdxQ3: Bcep18194_C7710 1057492 Bcep18194_C7709 COG0730 # TF - Bamb_5788: Bcep18194_B3074 1064010 Bcep18194_B3075 PF00583 1064011 Bcep18194_B3076 PF02525 # TF - SdhR: Bcep18194_B2153 1063087 Bcep18194_B2153 sdhR 1063086 Bcep18194_B2152 sdhC 1063085 Bcep18194_B2151 sdhD 1063084 Bcep18194_B2150 sdhA 1063083 Bcep18194_B2149 sdhB 1063082 Bcep18194_B2148 COG2938 1063081 Bcep18194_B2147 gltA 1062062 Bcep18194_B1125 acnB 1061546 Bcep18194_B0610 aceA 1060262 Bcep18194_A5856 icd 1063088 Bcep18194_B2154 mdh 1063089 Bcep18194_B2155 citE # TF - PdxW2: Bcep18194_B0395 1061334 Bcep18194_B0396 pdxO2 # TF - BPSS1200: Bcep18194_B1740 1062678 Bcep18194_B1741 PF02627 1062679 Bcep18194_B1742 PF07883 # TF - BPSS0970: Bcep18194_B1266 1062202 Bcep18194_B1265 fdhA2 1062201 Bcep18194_B1264 COG3781 # TF - YdcR: Bcep18194_B0568, Bcep18194_B1356 1063373 Bcep18194_B2437 PF11174 1061505 Bcep18194_B0569 COG0823 1062291 Bcep18194_B1354 cysI 1062290 Bcep18194_B1353 COG3749 # TF - Bphy_4252: Bcep18194_B3021 1063956 Bcep18194_B3021 Bphy_4252 1063957 Bcep18194_B3022 sgaA 1063958 Bcep18194_B3023 Bphy_4254 1063959 Bcep18194_B3024 bglu_2g14140 1063960 Bcep18194_B3025 dld2 # TF - Bamb_3558: Bcep18194_B1880 1062818 Bcep18194_B1881 null # TF - UxuR3: Bcep18194_B1359 1062296 Bcep18194_B1359 uxuR3 1062295 Bcep18194_B1358 uxuA 1062294 Bcep18194_B1357 Sugar phosphate permease # TF - Bcep18194_B0628: Bcep18194_B0628 1061556 Bcep18194_B0620 Bamb_4451 1061557 Bcep18194_B0621 mhpD 1061558 Bcep18194_B0622 COG4948 1061559 Bcep18194_B0623 Bamb_4448 1061560 Bcep18194_B0624 Bamb_4447 1061561 Bcep18194_B0625 Bamb_4446 1061562 Bcep18194_B0626 Bamb_4445 1061563 Bcep18194_B0627 Bamb_4444 1061564 Bcep18194_B0628 Bamb_4443 # TF - EutR: Bcep18194_B0995 1061933 Bcep18194_B0996 PF01019 1061934 Bcep18194_B0997 PF00375 1061932 Bcep18194_B0995 eutR # TF - GguR: Bcep18194_A4276 1062808 Bcep18194_B1871 exuT 1062809 Bcep18194_B1872 agl 1062810 Bcep18194_B1873 omp 1061261 Bcep18194_B0328 kgsD 1058652 Bcep18194_A4276 gguR 1061266 Bcep18194_B0333 garD 1057219 Bcep18194_C7436 uxuP 1057218 Bcep18194_C7435 uxuQ 1057217 Bcep18194_C7434 uxuM 1061260 Bcep18194_B0327 gudP 1058651 Bcep18194_A4275 gudD 1061265 Bcep18194_B0332 kdgD 1059894 Bcep18194_A5498 gguT 1059895 Bcep18194_A5499 uxuF # TF - UdhR: Bcep18194_C6940 1063654 Bcep18194_B2718 exuT 1063653 Bcep18194_B2717 udhR 1063652 Bcep18194_B2716 udh