# TF - RpoH: LI0613
>LI0685(dnaJ) Score=6.5 Pos=-71 [Lawsonia intracellularis PHE/MN1-00]
CCTGAAG----------------CCCTAT
# TF - NikR: LI1090
>LI0864 Score=6.5 Pos=-98 [Lawsonia intracellularis PHE/MN1-00]
GTATCAT-------------GTATTAC
>LI0864 Score=5.5 Pos=-68 [Lawsonia intracellularis PHE/MN1-00]
ATGATAT-------------GTTACAC
# TF - Fur: LI0035
>LIA011 Score=4.4 Pos=40 [Lawsonia intracellularis PHE/MN1-00]
ATGAATATATTATTCAT
>LIA012 Score=5.1 Pos=10 [Lawsonia intracellularis PHE/MN1-00]
TTGAAATTCAATCTCAG
>LIA012 Score=4.3 Pos=4 [Lawsonia intracellularis PHE/MN1-00]
AGAATATTGAAATTCAA
>LI0660(bfr) Score=3.7 Pos=-105 [Lawsonia intracellularis PHE/MN1-00]
ATGATAGTAATCTTTAA
>LI0660(bfr) Score=4 Pos=-235 [Lawsonia intracellularis PHE/MN1-00]
TTGACGTTTATATTCGT
>LI0660(bfr) Score=4.5 Pos=-307 [Lawsonia intracellularis PHE/MN1-00]
TTGATATTCATTACGAT
>LI0660(bfr) Score=4.1 Pos=-313 [Lawsonia intracellularis PHE/MN1-00]
GTTATGTTGATATTCAT
>LI1081(oppD) Score=5.3 Pos=-127 [Lawsonia intracellularis PHE/MN1-00]
TTGATAATGATTGTCAA
>LI0650(pep) Score=4.4 Pos=-270 [Lawsonia intracellularis PHE/MN1-00]
TTGAATTTGAAATGCTT
>LI1125(copA) Score=4.3 Pos=54 [Lawsonia intracellularis PHE/MN1-00]
TTGAACTTTATTGTCAA
# TF - FliA
>LI0211(fliD) Score=7.1 Pos=-99 [Lawsonia intracellularis PHE/MN1-00]
TAAACATA-----------TCCGATAA
>LI0634 Score=7.5 Pos=-48 [Lawsonia intracellularis PHE/MN1-00]
TAAAGTTT-----------ACCGATGG
>LI0096 Score=7.1 Pos=-65 [Lawsonia intracellularis PHE/MN1-00]
TAAAGTTT-----------CACGATAA
# TF - Rex: LI1059
>LI0399(atpF2) Score=4.7 Pos=-171 [Lawsonia intracellularis PHE/MN1-00]
TATGTTAAATGAAGCACAAG
# TF - DVU2894: LI1092
>LI1092 Score=4.9 Pos=-70 [Lawsonia intracellularis PHE/MN1-00]
TGTCAGACTCTTGACA
>LI0743(flgG) Score=4.8 Pos=-425 [Lawsonia intracellularis PHE/MN1-00]
CGTCAATATACTGGCA
>LI1017 Score=5 Pos=-436 [Lawsonia intracellularis PHE/MN1-00]
CGTCAACTTATTGACT
# TF - DVUA0100: LI1151
>LI1157 Score=5.4 Pos=-271 [Lawsonia intracellularis PHE/MN1-00]
GCCAACCTTGTTGGC
# TF - DVU2934: LI0687
>LI0627(lpxC) Score=4.8 Pos=-220 [Lawsonia intracellularis PHE/MN1-00]
TGTTGTTAAAAAACA
>LI0627(lpxC) Score=4.8 Pos=-117 [Lawsonia intracellularis PHE/MN1-00]
TGTTGTAAAAAAACA
>LI0627(lpxC) Score=3.9 Pos=-158 [Lawsonia intracellularis PHE/MN1-00]
CGTTTTATTACAGCA
>LI0627(lpxC) Score=4.5 Pos=-217 [Lawsonia intracellularis PHE/MN1-00]
TGTTAAAAAACAACA
# TF - ZraR: LI1079
>LI1078(zraS) Score=5.5 Pos=-19 [Lawsonia intracellularis PHE/MN1-00]
TGTATAAAAAATATACA
>LI1080(LI1080) Score=4.9 Pos=13 [Lawsonia intracellularis PHE/MN1-00]
TGTATGAGTTTTATACA
# TF - RpoN: LI0457
>LI0746(DVU0518) Score=3.8 Pos=-62 [Lawsonia intracellularis PHE/MN1-00]
TTTGGTATAAAAGCTGCAT
>LI0568(fliK) Score=4.5 Pos=-44 [Lawsonia intracellularis PHE/MN1-00]
TTTGGAACACTCCTTGTAC
>LI0567(flgD) Score=4.4 Pos=-82 [Lawsonia intracellularis PHE/MN1-00]
CTTGGCACATAACATGCAT
>LI0348(flgE) Score=5.2 Pos=-77 [Lawsonia intracellularis PHE/MN1-00]
CTTGGCATGGCTTCTGCTT
>LI0860(flgB) Score=5 Pos=-68 [Lawsonia intracellularis PHE/MN1-00]
TATGGCATATGTTTTGCTT
>LI0856(fliG) Score=4.4 Pos=-108 [Lawsonia intracellularis PHE/MN1-00]
ATAGGCATGCAGATTGCAT
>LI1060(fliJ) Score=4.3 Pos=-73 [Lawsonia intracellularis PHE/MN1-00]
TTAGGAATATTTTTTGCAT
>LI0700 Score=5.1 Pos=-80 [Lawsonia intracellularis PHE/MN1-00]
TTTGGCATGTGCATTGCTT
>LI0507 Score=3.9 Pos=-62 [Lawsonia intracellularis PHE/MN1-00]
TAAGGCCTAAAATTTGCAT
>LI0211(fliD) Score=4.7 Pos=-61 [Lawsonia intracellularis PHE/MN1-00]
TTTGGCACTTTATTTGCTG
>LI0627(lpxC) Score=4.3 Pos=-40 [Lawsonia intracellularis PHE/MN1-00]
TTTGGATCGTTTATTGCAT
>LI0887 Score=5.3 Pos=-53 [Lawsonia intracellularis PHE/MN1-00]
CTTGGCAAGCTTTTTGCTT
>LI0740(flgF) Score=4.6 Pos=-147 [Lawsonia intracellularis PHE/MN1-00]
CTTGGTATAACTTTTGCTA
>LI0277 Score=4.4 Pos=-57 [Lawsonia intracellularis PHE/MN1-00]
TTAGGCATAGTTTTTGATT
>LI1017 Score=4.4 Pos=-60 [Lawsonia intracellularis PHE/MN1-00]
AATGGCTCACCTCTTGCAA
>LI1156 Score=4.6 Pos=-151 [Lawsonia intracellularis PHE/MN1-00]
ATTGGTATACTCTTTGCTG
>LI1157 Score=4.7 Pos=-193 [Lawsonia intracellularis PHE/MN1-00]
TTTGGCATAGTCTCTGCAG
>LI0899 Score=3.5 Pos=-60 [Lawsonia intracellularis PHE/MN1-00]
AATAGTATGAATATTGCAT
>LI0570(fliC) Score=4.2 Pos=-56 [Lawsonia intracellularis PHE/MN1-00]
ATTGGTATATCCATTGCAT
# TF - DVU1063: LI1115
>LI0348(flgE) Score=4 Pos=-88 [Lawsonia intracellularis PHE/MN1-00]
GGCAAAAATTTCT
>LI0348(flgE) Score=3.9 Pos=-42 [Lawsonia intracellularis PHE/MN1-00]
GGTACATTTTGCC
>LI0211(fliD) Score=4 Pos=-237 [Lawsonia intracellularis PHE/MN1-00]
GGAAAGATTTCCC
>LI0746 Score=4.2 Pos=-8 [Lawsonia intracellularis PHE/MN1-00]
GGCACAAAATGCC
>LI0887 Score=4.6 Pos=-121 [Lawsonia intracellularis PHE/MN1-00]
GGAATTTTTTGCC
>LI0568(fliK) Score=4.4 Pos=1 [Lawsonia intracellularis PHE/MN1-00]
TGCAGATTTTTCC