# TF - Caur_3587: Rcas_2310
>Rcas_2311(PF0583) Score=5.6 Pos=-252 [Roseiflexus castenholzii DSM 13941]
ATATCGATGATCATCAATAC
>Rcas_2310(Caur_3587) Score=6.6 Pos=-52 [Roseiflexus castenholzii DSM 13941]
ATATTGACAATCTTCAATAT
# TF - MhpR: Rcas_2412
>Rcas_2414(hpaB) Score=5.8 Pos=-222 [Roseiflexus castenholzii DSM 13941]
CGTTCGGCTATACCGAATA
# TF - SufR: Rcas_0303
>Rcas_0303(sufR) Score=6.8 Pos=-62 [Roseiflexus castenholzii DSM 13941]
TTTTTATTGACAATAGATA
# TF - Caur_3401: Rcas_4171
>Rcas_4170(acrB) Score=6.6 Pos=-156 [Roseiflexus castenholzii DSM 13941]
ATTTTACTGTATAGTAGTCT
# TF - NagR: Rcas_0477
>Rcas_0477(nagR) Score=6.9 Pos=-132 [Roseiflexus castenholzii DSM 13941]
TTGTCAGTTCAATGGACTAACAC
# TF - Caur_3448: Rcas_1277
>Rcas_1277(Caur_3448) Score=5.4 Pos=-34 [Roseiflexus castenholzii DSM 13941]
CCGCTTAACCGTTTCACCCC
>Rcas_1277(Caur_3448) Score=4.4 Pos=-18 [Roseiflexus castenholzii DSM 13941]
CCCCTTAATCGTTTCACGAT
# TF - NrtR: Rcas_0387
>Rcas_1635 Score=5.8 Pos=-39 [Roseiflexus castenholzii DSM 13941]
ATAGTGTCAATATCACAATAA
>Rcas_1005(nadC) Score=6.2 Pos=-65 [Roseiflexus castenholzii DSM 13941]
ATAGAGTAACATTGACACTAA
>Rcas_1005(nadC) Score=6.6 Pos=-11 [Roseiflexus castenholzii DSM 13941]
ATAGTGTAAAAATGACACTAA
>Rcas_2204(nadE) Score=6.1 Pos=-53 [Roseiflexus castenholzii DSM 13941]
AAAGTGTTATACTAACACTAA
>Rcas_0387(nrtR) Score=5.7 Pos=-70 [Roseiflexus castenholzii DSM 13941]
TTATTGTTGTAATGACACTAA
# TF - Rex: Rcas_1392
>Rcas_2846(pckA) Score=3.9 Pos=-42 [Roseiflexus castenholzii DSM 13941]
TCGTGATGTGTTGCACGG
>Rcas_2088(nuoA) Score=5 Pos=-64 [Roseiflexus castenholzii DSM 13941]
TTGTGATATACTCAACAA
>Rcas_4255(fpr) Score=3.9 Pos=-115 [Roseiflexus castenholzii DSM 13941]
CTGTTCCTTTCATCACAA
>Rcas_3898(Cagg_2669) Score=5.2 Pos=-53 [Roseiflexus castenholzii DSM 13941]
TCGTGAAGCATATCACGA
>Rcas_3898(Cagg_2669) Score=5.3 Pos=-79 [Roseiflexus castenholzii DSM 13941]
TTGTGATTATTATTACAA
>Rcas_3936(Cagg_1949) Score=4.3 Pos=-44 [Roseiflexus castenholzii DSM 13941]
TTGTGCAAGATTTCACGG
>Rcas_1271(atpB) Score=4.4 Pos=-36 [Roseiflexus castenholzii DSM 13941]
TTGTGAAAGTGTTCTCAA
>Rcas_2323(hepT) Score=5.8 Pos=-48 [Roseiflexus castenholzii DSM 13941]
TTGTTATGTATTTCACAA
>Rcas_1392(rex) Score=4.3 Pos=-109 [Roseiflexus castenholzii DSM 13941]
TAGTGCTACACTTCACAT
>Rcas_3744(bchY) Score=4.7 Pos=-69 [Roseiflexus castenholzii DSM 13941]
TTGTGATGTTTGTCACCT
>Rcas_3558(cyoA) Score=4.1 Pos=-127 [Roseiflexus castenholzii DSM 13941]
TCGTGCAACTTTTCACGT
>Rcas_4304(ctaB) Score=4.7 Pos=-113 [Roseiflexus castenholzii DSM 13941]
TTGTGAAGTTTGACACAA
# TF - LexA: Rcas_1071
>Rcas_4093(sbcC) Score=4.1 Pos=-32 [Roseiflexus castenholzii DSM 13941]
GCGCGCATCTGTTCGA
>Rcas_0027(ssb) Score=4.3 Pos=-114 [Roseiflexus castenholzii DSM 13941]
TGGAACATGCATGCTA
>Rcas_2543(parB) Score=4.6 Pos=-83 [Roseiflexus castenholzii DSM 13941]
CCGAACATCTGTACTG
>Rcas_2146(Cagg_1574) Score=4.7 Pos=-129 [Roseiflexus castenholzii DSM 13941]
TAGAACACATGTTCTT
>Rcas_3531(mutS) Score=4.7 Pos=-42 [Roseiflexus castenholzii DSM 13941]
TAGAACATCGGTACGA
>Rcas_4419(uvrA) Score=4.7 Pos=-107 [Roseiflexus castenholzii DSM 13941]
TCGCACACCTGTTCAC
>Rcas_3053(ruvB) Score=4.7 Pos=-24 [Roseiflexus castenholzii DSM 13941]
CCGCACACGTGTGCGG
>Rcas_2960(recA) Score=5 Pos=-137 [Roseiflexus castenholzii DSM 13941]
TAGCCCACTTGTGCGA
>Rcas_2960(recA) Score=4.3 Pos=-120 [Roseiflexus castenholzii DSM 13941]
AAGAACCTTCGTGCTA
>Rcas_4196(Cagg_3684) Score=4.3 Pos=-86 [Roseiflexus castenholzii DSM 13941]
TCGAACACACGTTCAT
>Rcas_0100(mutL) Score=4.3 Pos=-33 [Roseiflexus castenholzii DSM 13941]
TCGCATACGTGTTCGT
# RNA - Cobalamin
>Rcas_0649(btuR) Score=61.3 Pos=-424 [Roseiflexus castenholzii DSM 13941]
TCAATCCAACGACCGTCGCGGTGACCCGCAGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGGCGATTGTCAGCCGGAAGCCAGGACGCCTGCCGCGATGTCTGTTGTTCAG
>Rcas_2247 Score=64.2 Pos=-325 [Roseiflexus castenholzii DSM 13941]
CAAGTGAATACCATCGCGGTGACCCGCAGGCCCGGATGCCAGGGCATAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGGCAATCGTTGCCGGAAGCCAGGACGCCTGCCGCGATGTTGATTGTGTTCGA
# RNA - FMN
>Rcas_2389(ribX) Score=97.6 Pos=-386 [Roseiflexus castenholzii DSM 13941]
CTACGATCTTCGGGGCAGGGTGAAATTCCCGATCGGCGGTGATGTGCAGGATGCTGCACCAGCCCGCGAGCCGCAAGGCAGGAGACCGGTGCGAAGCCGGCGCCGACGGTTACAGTCCGGATGGGAGAAGATCGGC
# RNA - Glycine
>Rcas_2285(gcvT) Score=44 Pos=-137 [Roseiflexus castenholzii DSM 13941]
CCGACGACCCTCTGGAGAGCCCGTCTATTCGGGCGCCGACGGAGAAACCCGTCATGCGGGGCATCTCACAGGTCAGTGGACAGAGGTCAGGCG
>Rcas_2285(gcvT) Score=50.1 Pos=-235 [Roseiflexus castenholzii DSM 13941]
GATGACGGGCGTGGGAGAGCGCCGCGTAAGCGGTCGCCGAAGGAGCAAGCCAGGGAAGCCGGGCCCTGCGCGAATCTCTCAGGCTGAAGGACTGCGCCC
# RNA - L10_leader
>Rcas_4318(rplJ) Score=33.9 Pos=-163 [Roseiflexus castenholzii DSM 13941]
ACAGGTGAATAGTCGAGCGCCGCAGACAGCGGGTGCGTGTGCTTAATGGCTGCGTGCCGCCCGCCGAGGCAGCTTCCTGAGACCATGCGATGCATGGGTTCGTGGGTTGCTGCGTTTGTGTGCGGCAACCCGCGTTTTTTATGGCGGAA
# RNA - SAM
>Rcas_3878(metH) Score=57.3 Pos=-237 [Roseiflexus castenholzii DSM 13941]
GCTCATCCAGAGGAGTGGAGGGACCGGCCCGACGAAGCTCCGCCAACCCGTGGCCGCAGGTCGTGCAATCGCCGCACCGGCGCTCCGGCTAGAGGGTGGCAATTCCGGCAGCGCAGGCTGGAAGATGAGCGGT
>Rcas_2040(metY) Score=46.7 Pos=-403 [Roseiflexus castenholzii DSM 13941]
ACTCTTATCCAGAGAGGCGGAGGGACCGGCCCGATGAAGCCTCGGCAACCACCAGTTGAGGATGAGCAGTGCAGGCGCCAACACCAGCATCTGTTGTGAT
# RNA - T-box(Gly)
>Rcas_0046(glyS) Score=37.3 Pos=-236 [Roseiflexus castenholzii DSM 13941]
GAACGCGGCGTGGAACCAGAGGAGTACTCGCGCGCGCTGCGCGCAGCGAGCCGGGGAGGGTGTAAGCCCGGCGGCAGCACGGCGAAGAAGGGCGCTGGGGAGCTGCATCGTCTTCGAGTGACCGCATTGGGCGTCAGCCGCAGAGCGGTAACTGGGGTGGAACCGCGTGTTGCAGTGCAATGCGTCCCCAGG
# RNA - T-box(Ile)
>Rcas_0322(ileS) Score=86.5 Pos=-296 [Roseiflexus castenholzii DSM 13941]
CAAAGGCCGTGACGGAGACGAGTAGGCGATAGCAAACCGGTCAGCGAACGCGCGGGTGGTGTGAGGCGCGTCTGTGTTTGGTCGCTGAAGATCACTCCTGAGCCGGGGGGCGAACGCTGCTGTTGCGCGCCAGTAGTCTGCTCCGGTCTCGCCGACCGTTATCCCGGCGGAGGCGTGATAGCGCCTTAATGAGTGCAGTCGATGACGCATCGGCTGAATCAGGGTGGTACCGCGGGGTTTTCCTCACCTCGTCCCTGCTGA
# RNA - T-box(Phe)
>Rcas_1438(pheS) Score=62.5 Pos=-297 [Roseiflexus castenholzii DSM 13941]
CGCAGGCTATGACGAAGCGAGTAGGCGGGAGACAACGAGCAGAGAGCGATGGCCGAAGGGTGTGAGCCGTCGCCGTGACGCCCCGCTGAAGTTCCCTTCCGAGCCGCGACGGGGAAAGGAAGCGCAGGCTGCATAGCGGCTGTCTGCGCAGGCGCCGAGTAGTCGTTGCCGGTTGCCCTCCGCTATCGGGGCTATGAGGGTGGAGTCGCCATGGGCGATTCTGCCGAAACAGGGTGGTACCACGGGCCACGCCTCGTCCCTGGCGA
# RNA - T-box(Ser)
>Rcas_1496(Cagg_1428) Score=68.8 Pos=-392 [Roseiflexus castenholzii DSM 13941]
GCCAATGACGGTGACGGAGACGACGTAGGCGCTCATCGGCACACAGAGAGCCGCCGGATGGTGCGAGGCGGTTGCCTGGTGAACGACCGAATCCCCTCCTGAGTCGCGCGGGAAAGGTGTGGCATTCCTGCCCCTCTCGAACCGGCGCCGGCTGCGCCCGTTAGCGCGCACTGCAATCGAGGTCGCGTCTATCTGACGCGGCGAATGAAGGTGGCACCACGGGGAACACGCTCCTCGTCCTTCGC
# RNA - T-box(Thr)
>Rcas_0350 Score=79.9 Pos=-278 [Roseiflexus castenholzii DSM 13941]
AGACTGTGCGTTGACGAGGACGAGTAGTTGCGCATCAGCCTTCAGGGAAGGCGCGCCGAGGACTGCGAGCGCGCCTGGCGACGAGCGTAGCGAAAACCCCCTCCGAGCCGCCTCTAGAACATCGAACCGATCAGTATGGAGGCGCGGGTTCGCCCGATACCGCGATCATGAGGGAAGACGTTGCCAGCAGTTTTCGACAGGCAGCGTTCTTCTAAACATGGGTGGAACCACGGAGCAGCCCTTCGTCCCATGC
# RNA - T-box(Trp)
>Rcas_2159(trpB) Score=32.4 Pos=-396 [Roseiflexus castenholzii DSM 13941]
ATTAACAGCGATGAACGGGAAGAGTACGCACCAGGGCGCGGCGCAGCGAGCCGACGGCGTGGTGTGAGGTCGGTGCAGGCGACGGTGCGGAATGGGCCCGGGAGTTGCGGAGCGAACCGGCAACGCTGTGCGTTGTCCGCAGTAGGAGCCGCCGGAAACGCCGCCGTTATCA
# RNA - glmS
>Rcas_1205(glmS) Score=25.8 Pos=-405 [Roseiflexus castenholzii DSM 13941]
CCAGGCGCGCCGCCGCCTGTAAGCGCTCCAGCAAAACCATCCGGCGACGGGTGACACAAATGGAGCGT
# RNA - TPP
>Rcas_0665(COG0011) Score=58.1 Pos=-157 [Roseiflexus castenholzii DSM 13941]
AGGGGAGCCAGGTGAGCCTGGCTGAGAGTGCGGCCCGACGATGCCGCTGACCCTTTGAACCTGACCTGGGTTATGCCAGCGTAGGGAATG
>Rcas_1431(tenA) Score=55.8 Pos=-241 [Roseiflexus castenholzii DSM 13941]
CAGTGTTCCGTAGGGGCGCTTCGCTGACGCGGCGAGGCTGAGAGGGCACCCTTTGCACCTGATCCGGGTAATGCCGGCGTAGGAAATCGGAACGGTCGCTGA
>Rcas_4121(thiE) Score=71.7 Pos=-180 [Roseiflexus castenholzii DSM 13941]
GGCGCCACTGGGGGAGCCGGATGAGTCCGGCTGAGAGTGCGACCCTACCGATGTCGCAGACCCTTTGAACCTGACCTGGGTCATACCAGCGTAGGGAAGTGTCCAGACAATGTCTG
# RNA - yybP-ykoY
>Rcas_0372(atcL) Score=50.5 Pos=-150 [Roseiflexus castenholzii DSM 13941]
TAGTCGTAGATGGGGAGTAGCAACCGGATTGTCCGGATCAGGCAGTCGTCACCACGGAAAGGAATTTCCCGGCTGCCTGAACGAAACCGCAAGACCATCGCAGCAAGCGA
# TF - NrdR: Rcas_3251
>Rcas_0124(nrdJ) Score=4.2 Pos=-219 [Roseiflexus castenholzii DSM 13941]
GCGCCATATTTAGGAA
>Rcas_0124(nrdJ) Score=4.2 Pos=-334 [Roseiflexus castenholzii DSM 13941]
ATACCGGATTTAGTTC
# TF - HrcA: Rcas_4390
>Rcas_4390(hrcA) Score=7.2 Pos=-102 [Roseiflexus castenholzii DSM 13941]
CTAGCACTCACCGGTCGAGAGTGCTAA
>Rcas_1212(groES) Score=7.7 Pos=-72 [Roseiflexus castenholzii DSM 13941]
TTAGCACTCTTTGGTCAAGAGTGCTAA
>Rcas_1212(groES) Score=6.4 Pos=-145 [Roseiflexus castenholzii DSM 13941]
CTGGCACTCTCATCTGGCGAGTGCTAA
# TF - ModR: Rcas_2179
>Rcas_2179(modR) Score=5.3 Pos=-27 [Roseiflexus castenholzii DSM 13941]
TATATTTATTTTTTGAATAGT
# TF - RhaR: Rcas_3457
>Rcas_3457(rhaR) Score=6.9 Pos=-58 [Roseiflexus castenholzii DSM 13941]
TTGACA----TCGAAA
>Rcas_3457(rhaR) Score=6.3 Pos=-68 [Roseiflexus castenholzii DSM 13941]
CCGAAA----TTGACA
>Rcas_3457(rhaR) Score=7 Pos=-78 [Roseiflexus castenholzii DSM 13941]
TCGAAA----CCGAAA
# TF - MntR: Rcas_3322
>Rcas_1724(mntA) Score=5.9 Pos=-55 [Roseiflexus castenholzii DSM 13941]
ATTTTAGGATTTCCAAAATT
>Rcas_3322(mntR) Score=5.8 Pos=-9 [Roseiflexus castenholzii DSM 13941]
GTTTTAGGAATGCCTAAATA
# TF - FetR: Rcas_4363
>Rcas_4373(hmuV) Score=5.9 Pos=-123 [Roseiflexus castenholzii DSM 13941]
TTATTAGACTATACTAACTT
>Rcas_0821(RoseRS_4469) Score=6.3 Pos=-98 [Roseiflexus castenholzii DSM 13941]
TTATTAGCATATGCTAACAT
>Rcas_3171(fbpA) Score=5.5 Pos=-159 [Roseiflexus castenholzii DSM 13941]
ATGTTAGAGTAACCTAACAC
# TF - Zur: Rcas_3901, Rcas_1649
>Rcas_2945(yciC) Score=4.3 Pos=-58 [Roseiflexus castenholzii DSM 13941]
CATTGATATACACTATCATCA
>Rcas_1591(znuA) Score=5.3 Pos=-122 [Roseiflexus castenholzii DSM 13941]
TATCCATACCACATATCAATA
# TF - AcrR: Rcas_0269
>Rcas_0269(acrR) Score=6.7 Pos=-86 [Roseiflexus castenholzii DSM 13941]
ATTCCTGACCGTTCGGTAAAGTGA
>Rcas_2058(Cagg_0420) Score=6.3 Pos=-41 [Roseiflexus castenholzii DSM 13941]
ACTCCTTACCGACCGGTAAGGAAA
# TF - Zur2: Rcas_3895
>Rcas_3900(Rcas_3900) Score=5.6 Pos=-157 [Roseiflexus castenholzii DSM 13941]
CAACTGATAGATAAGATCATTTG
>Rcas_3894(COG0701) Score=7 Pos=-33 [Roseiflexus castenholzii DSM 13941]
TAAGTGATAGTAACTATCATTTA
>Rcas_2945(yciC) Score=5.6 Pos=-59 [Roseiflexus castenholzii DSM 13941]
TCATTGATATACACTATCATCAA
>Rcas_2948(fmdB) Score=6.1 Pos=-50 [Roseiflexus castenholzii DSM 13941]
CAAGTGATAGCATATATCACAAA
>Rcas_3893(Rcas_3893) Score=5 Pos=-63 [Roseiflexus castenholzii DSM 13941]
TCGTTGAAAGTAACTATCATCTG
# TF - HcpR: Rcas_3897
>Rcas_3898(Rcas_3898) Score=6.5 Pos=-111 [Roseiflexus castenholzii DSM 13941]
AACTTGCGCCAGCGCAACGA
# TF - Cagg_3094: Rcas_3496
>Rcas_3496(Cagg_3094) Score=5.7 Pos=-114 [Roseiflexus castenholzii DSM 13941]
ATATTGTATACAATCT
>Rcas_3496(Cagg_3094) Score=5.6 Pos=12 [Roseiflexus castenholzii DSM 13941]
AAATTGTATACAACAA
# TF - Rcas_2304: Rcas_2304
>Rcas_2304(Rcas_2304) Score=6.6 Pos=-71 [Roseiflexus castenholzii DSM 13941]
AGAAATTATAAAAATTTCC
# TF - Rcas_3562: Rcas_3562
>Rcas_3562(Rcas_3562) Score=7.4 Pos=-44 [Roseiflexus castenholzii DSM 13941]
TGTCTTATATCCTATGCCATAGGACA