# TF - Caur_3401
>Chy400_3664(acrB) Score=7 Pos=-69 [Chloroflexus sp. Y-400-fl]
ACTTTACGGTATAGTAAAAA
# TF - HpdR: Chy400_0871
>Chy400_0871(hpdR) Score=7 Pos=-63 [Chloroflexus sp. Y-400-fl]
CACCACTGATAAGTGGTG
# TF - Caur_1779: Chy400_1926
>Chy400_1926(Caur_1779) Score=6 Pos=-317 [Chloroflexus sp. Y-400-fl]
CGTTCTACTAAGAAGAACG
>Chy400_1925(nuoL) Score=6 Pos=-106 [Chloroflexus sp. Y-400-fl]
CGTTCTTCTTAGTAGAACG
# TF - MhpR: Chy400_1471
>Chy400_1469(hpaB) Score=5.6 Pos=-138 [Chloroflexus sp. Y-400-fl]
CGTTCGACTATGTCGAATT
>Chy400_1468(Cagg_2029) Score=5.6 Pos=-110 [Chloroflexus sp. Y-400-fl]
AATTCGACATAGTCGAACG
# TF - Caur_3866: Chy400_4175
>Chy400_4165(COG3459) Score=6.1 Pos=-88 [Chloroflexus sp. Y-400-fl]
GTAATGAAACGTTTCATACC
>Chy400_4165(COG3459) Score=5.9 Pos=-193 [Chloroflexus sp. Y-400-fl]
CGTATGAAACGTTACACAAA
# TF - KojR: Chy400_2182
>Chy400_2182(kojR) Score=6.5 Pos=-30 [Chloroflexus sp. Y-400-fl]
AAAAGCGAACGTTCGCCTAG
>Chy400_2182(kojR) Score=6.5 Pos=-84 [Chloroflexus sp. Y-400-fl]
CCAGGCGAACGTTCGCTTTT
# TF - BfrR: Chy400_2954
>Chy400_2954(bfrR) Score=6.2 Pos=-46 [Chloroflexus sp. Y-400-fl]
GTCAATGAACGACCAATCTC
# TF - Caur_3587: Chy400_3868
>Chy400_3868(Caur_3587) Score=6.6 Pos=-60 [Chloroflexus sp. Y-400-fl]
ATATTGACAATCTTCAATAT
>Chy400_3867(PF07992) Score=6 Pos=-43 [Chloroflexus sp. Y-400-fl]
ATATCGATGATCTTCGATAT
# TF - SufR: Chy400_3749
>Chy400_3749(sufR) Score=6.9 Pos=-64 [Chloroflexus sp. Y-400-fl]
TTTTTATTGACAATAGACT
# TF - NagR: Chy400_1208
>Chy400_1208(nagR) Score=6.8 Pos=-39 [Chloroflexus sp. Y-400-fl]
TTGTTAGTTCATTGGACTATCTA
# TF - Caur_1157: Chy400_1181
>Chy400_1181(Caur_1157) Score=5.6 Pos=-117 [Chloroflexus sp. Y-400-fl]
GACTGGAAGCGCTTTCACGG
# TF - Caur_3448: Chy400_3712
>Chy400_3712(Caur_3448) Score=6 Pos=-50 [Chloroflexus sp. Y-400-fl]
CCACTTAATCGATTAACCGC
>Chy400_3712(Caur_3448) Score=5.5 Pos=-34 [Chloroflexus sp. Y-400-fl]
CCGCTTAATCGTTTAACTAA
# TF - NrtR: Chy400_3450
>Chy400_0205(pncB) Score=5.8 Pos=-35 [Chloroflexus sp. Y-400-fl]
TTAGTGTATAATTTACACTAT
>Chy400_1521(nadA) Score=5.2 Pos=-90 [Chloroflexus sp. Y-400-fl]
TTAGTGACCTCTTGACAATAT
>Chy400_1521(nadA) Score=6.4 Pos=-36 [Chloroflexus sp. Y-400-fl]
AAAGTGTAATAATAACACTAA
>Chy400_4233(pncA) Score=5.7 Pos=-37 [Chloroflexus sp. Y-400-fl]
ATAGTGTCAGTTTTACACCAA
>Chy400_3450(nrtR) Score=6.1 Pos=-47 [Chloroflexus sp. Y-400-fl]
TTAGTGTATAAATAACACTAA
# TF - Rex: Chy400_3940
>Chy400_1671(fpr) Score=4.5 Pos=-61 [Chloroflexus sp. Y-400-fl]
CTGTGCTGTAAATCACAA
>Chy400_3880(nuoM3) Score=5.2 Pos=-250 [Chloroflexus sp. Y-400-fl]
ACGTGATATTTATCACAA
>Chy400_3620(ndh) Score=5.3 Pos=-33 [Chloroflexus sp. Y-400-fl]
TTGTGAATGATTTCACTA
>Chy400_0662(acs) Score=5.4 Pos=-54 [Chloroflexus sp. Y-400-fl]
TTGTTATCTATATCACAA
>Chy400_1583(Cagg_1949) Score=4.8 Pos=-63 [Chloroflexus sp. Y-400-fl]
ATGTGGTATATTTCACAC
>Chy400_3293(atpB) Score=4 Pos=-109 [Chloroflexus sp. Y-400-fl]
TTGTGAAAGATCGAACAA
>Chy400_4040(hepT) Score=5.7 Pos=-123 [Chloroflexus sp. Y-400-fl]
TTGTGGTGAATATCACAA
>Chy400_3940(rex) Score=4.7 Pos=-55 [Chloroflexus sp. Y-400-fl]
TTGTGCTACACTTCACAT
>Chy400_2142(nuoA) Score=5.2 Pos=-54 [Chloroflexus sp. Y-400-fl]
TTGTGATATACTTCTCAT
>Chy400_0034 Score=4.1 Pos=-34 [Chloroflexus sp. Y-400-fl]
TCGTGAAAGAATCCACGA
# TF - LexA: Chy400_0511
>Chy400_2955(parB) Score=4.5 Pos=-74 [Chloroflexus sp. Y-400-fl]
TGGCACAATTGTTCGG
>Chy400_0262(uvdE) Score=4.4 Pos=-101 [Chloroflexus sp. Y-400-fl]
ACGAACATTTGTCCTA
>Chy400_1345(ftsK) Score=4.6 Pos=-67 [Chloroflexus sp. Y-400-fl]
TCGCACAAATATGCTA
>Chy400_0368(polA) Score=4.6 Pos=-30 [Chloroflexus sp. Y-400-fl]
TAGCAAATCTGTGCGG
>Chy400_1482(recA) Score=5.3 Pos=-126 [Chloroflexus sp. Y-400-fl]
TCGCACACCTGTGCTA
>Chy400_1482(recA) Score=4.8 Pos=-107 [Chloroflexus sp. Y-400-fl]
TAGCACATATGTACGG
>Chy400_0945(ssb) Score=4.6 Pos=-88 [Chloroflexus sp. Y-400-fl]
TCGCACAATAGTTCGA
>Chy400_3255(Cagg_3684) Score=4.4 Pos=-85 [Chloroflexus sp. Y-400-fl]
TAGAACATATGAACTA
>Chy400_3332(ruvB) Score=4.8 Pos=-37 [Chloroflexus sp. Y-400-fl]
GCGTACACCTGTGCGA
>Chy400_2036(Cagg_1574) Score=5.2 Pos=-177 [Chloroflexus sp. Y-400-fl]
TAGAACACTTGTTCTA
# RNA - Cobalamin
>Chy400_2789(btuR) Score=62.1 Pos=-272 [Chloroflexus sp. Y-400-fl]
CAAGTTCGTAGATCGTCGCGGTGACCCGTTGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGAAAGTCCAGCACTGTGCCGCAACTGTAACCGGCTGTTTCAGGCCGGAAGTCAGGACGCCTGCCGCGATGTGTTGTTCGTTC
>Chy400_0336(btuF) Score=66.1 Pos=-421 [Chloroflexus sp. Y-400-fl]
CAAGTTCATATCGTCGCGGTGACCCGTTGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGGTTAGAAAGCCGGAAGCCAGGACGCCTGCCGCGATGTGATGATGTTCGGC
>Chy400_1314(cbrX) Score=37.6 Pos=-267 [Chloroflexus sp. Y-400-fl]
ATCAGACCTGTCCTGTTGGGGTATGGTCTGAGCAACGGAAGCCGGTCCAAGGCCGGCGCAGTCCACGCTACTGTAGGTCGCGATGAGCGACGAGCCAGAATGCCCGTCCCTACACGTTCGCTTTCA
# RNA - FMN
>Chy400_2370(ribD) Score=111.8 Pos=-283 [Chloroflexus sp. Y-400-fl]
AAGACCTTCGGGGCAAGGTGAAATTCCTGATCGGCGGTAATGGTGGCGTGCCCACACAAGCCCGCGAGCCGTAAGGCAGGACCCGGTGTGATTCCGGGGCCGACGGTATAGTCCGGATGGGAGAAGGTCGGCGG
>Chy400_0882(ribX) Score=106.7 Pos=-279 [Chloroflexus sp. Y-400-fl]
ACGATCTTCGGGGCAGGGTGAAATTCCCGATCGGTGGTATAGCCCACGAGCGTGTTGAGAGGCACGCAGGATCCGGTGTAACTCCGGGGCCGACGGTTACAGTCCGGATGTAAAGAAGATCCAGAT
# RNA - L10_leader
>Chy400_2356(rplJ) Score=34.7 Pos=-207 [Chloroflexus sp. Y-400-fl]
ATTTGCATCGTTAGCTGCCTGAGACAGTCGGTGAGCATTGCTCCTAATGGCCTGTGGGCCGCCGACCGAGGTGGCGTCTGAGATGAGATAGTCGTGAGTTGCTGACTCACTCTGTCGATAGTGCGCAGCTATGGCTGCGCTGTGCTCGGTCGCCTGTCTCAGAGACGGGCGACCGTTTTTGATCTGCTTTGA
# RNA - PyrR
>Chy400_2042(pyrR) Score=49.1 Pos=-152 [Chloroflexus sp. Y-400-fl]
TCGCCTTTAATACAGCCCCGTGAGGCTGTGAAGGAGTAATTTGATGAGTTACACGTCAGCGTGGCCCATATTATCGCTGTGTTTTTTCCCTGATCCCGCACCTGCGGGCAGGGATTTTTTGTTTG
# RNA - SAM
>Chy400_1581(metI) Score=67.5 Pos=-182 [Chloroflexus sp. Y-400-fl]
GCACTCATCCAGAGCGGTGGAGGGACCGGCCCTGCGAAACCGCGCCAACCCGGCGGAAGTGAACCTGACGGGTGGCAACTCCGGCAGCATAAAGCTGGCAGATGAGAG
>Chy400_3271(mtnA) Score=84.1 Pos=-166 [Chloroflexus sp. Y-400-fl]
ATGCTCATCGAGATGGGCTGAGGGACTGGCCCGATGACGCCCGGCAACCCCCGCCAGGGAAGGTGCCAAATCCAGCGGCAATGGATATCATTGGCCGAAAGATGAGAG
>Chy400_3740(metY) Score=80 Pos=-212 [Chloroflexus sp. Y-400-fl]
ACTCATCCAGAGCGGTGGAGGGACCGGCCCGTTGAAACCGCAGCAACCCTCGTATGCGTCGCCGCATACGAACGGTGCTAAGTCCGGCAGAGGTGTTCTGGAAGATGAGCGAC
# RNA - T-box(Gly)
>Chy400_2682(glyS) Score=24.6 Pos=-227 [Chloroflexus sp. Y-400-fl]
CATCGGCGATGATCCGGAGGAGTACGTCGCGACGGGCGCACAGCGAACTAGGGACGGTGCGAGCCTGGTGGCCCTGAATGGCGGAACGGCGCCGGGGAGCTGAATCGTGATTGAGG
# RNA - T-box(Ile)
>Chy400_2909(ileS) Score=90.7 Pos=-309 [Chloroflexus sp. Y-400-fl]
TAACGGCGATGACGGGGACGAGTAGCTATCGCCAGCTCTTCAGCGAGCCTGGGGCGGTGTGAGCCGGGTAGAAGCAGCGATAGTGAACATCACCCCTGAGCTGGCAGGTGAACCGCGTGATGGTTTCGTCCGCGCAGTAACCGCGCCCGGAACGCCCACCGTTAGCGGGGCAGAGTGTTGATCGACACTCGCAAAGTGCGGTGCTTAGTGGCAGGCGCCACAGCATCGAATTGGGGTGGTACCGCGGGGTTAATCTGCCTCGTCCCCTGTTG
# RNA - T-box(Thr)
>Chy400_1309 Score=68.5 Pos=-288 [Chloroflexus sp. Y-400-fl]
TCGCAAAGCGCTGACGAGGACGAGTAGCCCGATTCCGGCCACAGGGAGGGCGTGTCGCGACTGAGAGCATGCCTGGCGATGGGTCGGGGGAAAACCCCCTCTGAGTGCATCCCGGAACGCGCAGTGCCAGTATGGGATGACGGGATTCGCCCGTTACCGCGAACAATGAGGCTCAACGCCGGCATGCCGGCGTTGGGTGAACACAGGGTGGAACCACGAAGCAGCTCTTCGTCCCCGTG
# RNA - T-box(Trp)
>Chy400_1532(trpB) Score=77.6 Pos=-320 [Chloroflexus sp. Y-400-fl]
ATAACCGACGTTGATCAGGAAGAGTAGCGAGTGTGGCGACAATCCAGCGAGCCGATGATGGTGTGAGATCGGCACGTTCGGCGCTCGTGAATGGGCCTGTGAGTCGCACGGCGAACCGGGTTTGTCCCGCAGTAGTCGCTGCCGGAGACGCCACCGTTATCAGGGCGCTAGGTGTGAAGCGGCTTTGCCGACAGCACCTGTAGAGTGCGTCGCTTGCGTGAGCGGCGGCGAACGAGAGTGGCACCGCGGTTTTTCCCGTCTCTCGA
# RNA - glmS
>Chy400_0502(glmS) Score=19.4 Pos=-351 [Chloroflexus sp. Y-400-fl]
TCTGCTTTGAAGCGCATGGACTTCGCGAGGAGCGAAGTTGACGAGGAGGGAGGTTCCCGGCGCGAGCCGGAGCTAACGGGTCTGAACGA
# RNA - TPP
>Chy400_0862(tenA) Score=56.2 Pos=-193 [Chloroflexus sp. Y-400-fl]
GTGTTCCGTAGGGGCGCTTTGCGACAAACGCGAGGCTGAGAGGAACCCTTGAACCTGATCCGGGTAATACCGGCGTAGGAAATCGGAACCGGGCACGATGT
>Chy400_0456(COG0011) Score=67.7 Pos=-197 [Chloroflexus sp. Y-400-fl]
TACGCGCTGCCAGGGGAGCCGGGTAAGCCCGGCTGAGAGTGCGGCCCGATTGATGCCGCTGACCCTTTGAACCTGATCTGGGTTATGCCAGCGGAGGGAAGGCGTATTGATGATACC
>Chy400_0401(thiM) Score=61.8 Pos=-228 [Chloroflexus sp. Y-400-fl]
ACTAATAAGCCAGGGGAGCCTGGGAGAACCGGGCTGAGAGGGTGTCTAGGCGTATCGCCACCGACACCGACCCTTTGAACCTGATCTGGGTTATGCCAGCGGAGGGAGGAGCAGGGTGCAGGTG
>Chy400_0859(cytX) Score=59.2 Pos=-202 [Chloroflexus sp. Y-400-fl]
ACAGCGTGTATGAGGGAGATCGGGGAGCCGGGCTGAGAGGATGGTCGCTATCCACCATCGACCTCGTGAACCTGCTCTGGGTAATGCCAGCGAAGGGAATACACGGTGGTTTATG
# RNA - yybP-ykoY
>Chy400_2382(ykoY) Score=51.2 Pos=-190 [Chloroflexus sp. Y-400-fl]
AGTGCGTAACGTTGGGGAGTAGCCGCCCGCCGACTGCGGGTTGATGTCGCCGTCAAGACGGAATGCAACATTCCCGGTGGCATCGCGTATCGGGCAACCGTACTGGCGAGACCGACGCAGTGGTG
# TF - NrdR: Chy400_3685
>Chy400_1894(nrdJ2) Score=5.4 Pos=-137 [Chloroflexus sp. Y-400-fl]
ACACTAGATATAGTAT
# TF - HrcA: Chy400_2238
>Chy400_2238(hrcA) Score=7.4 Pos=-55 [Chloroflexus sp. Y-400-fl]
TTAGCACTCTCACCTCACGAGTGCTAA
>Chy400_2961(groES) Score=7.4 Pos=-83 [Chloroflexus sp. Y-400-fl]
TTAGCACTCTCGACGTGACAGTGCTAA
>Chy400_2961(groES) Score=6 Pos=-156 [Chloroflexus sp. Y-400-fl]
CTAGCAATCTCTAACGTCGAGTGCTAA
# TF - ModR: Chy400_2685
>Chy400_2684 Score=6.9 Pos=-166 [Chloroflexus sp. Y-400-fl]
AGTATTCACAATGTGAATACT
>Chy400_2685(modR) Score=6.9 Pos=-102 [Chloroflexus sp. Y-400-fl]
AGTATTCACATTGTGAATACT
# TF - RhaR: Chy400_2467
>Chy400_2467(rhaR) Score=6.7 Pos=-71 [Chloroflexus sp. Y-400-fl]
TTGACA----TTGAAA
>Chy400_2467(rhaR) Score=6.5 Pos=-81 [Chloroflexus sp. Y-400-fl]
TCGTAA----TTGACA
>Chy400_2467(rhaR) Score=6.8 Pos=-91 [Chloroflexus sp. Y-400-fl]
TCGTAA----TCGTAA
# TF - MntR: Chy400_0107
>Chy400_0210(mntA) Score=5.8 Pos=-40 [Chloroflexus sp. Y-400-fl]
GATTTAGGTAAGGCTAAAAT
# TF - FetR: Chy400_2620
>Chy400_2616(hmuV) Score=5.8 Pos=-57 [Chloroflexus sp. Y-400-fl]
AAATTAGAGTATTCTAATAG
>Chy400_0349(fbpA) Score=6.2 Pos=-55 [Chloroflexus sp. Y-400-fl]
TTATTAGTGTATACTAATAA
>Chy400_0344(COG0716) Score=6.2 Pos=-158 [Chloroflexus sp. Y-400-fl]
TTATTAGCATATACTAACCT
>Chy400_4135(Haur_0321) Score=5.8 Pos=-136 [Chloroflexus sp. Y-400-fl]
TAATTAGCATACACTAACTA
>Chy400_0685(RoseRS_4469) Score=5.8 Pos=-92 [Chloroflexus sp. Y-400-fl]
TTATTAGAGTATGCTAACCG
# TF - Zur: Chy400_1857
>Chy400_2148(znuA) Score=6.1 Pos=-35 [Chloroflexus sp. Y-400-fl]
TTTTGAAACAATGTTTCATTA
# TF - AcrR: Chy400_3789, Chy400_1090
>Chy400_1090(acrR) Score=6.9 Pos=-48 [Chloroflexus sp. Y-400-fl]
ATTACTTACCGGTCGGTAAGAATT
>Chy400_3788(Cagg_0420) Score=6.2 Pos=-54 [Chloroflexus sp. Y-400-fl]
AATACTTACCGACCGGTCGGTTGG
# TF - Cagg_3094: Chy400_2440
>Chy400_2440(Cagg_3094) Score=5.7 Pos=6 [Chloroflexus sp. Y-400-fl]
AAATTGTATACAACTG
>Chy400_2440(Cagg_3094) Score=4.9 Pos=-174 [Chloroflexus sp. Y-400-fl]
ATGTTGTATACGATCA
>Chy400_2440(Cagg_3094) Score=5.5 Pos=-130 [Chloroflexus sp. Y-400-fl]
ATATTGTATACAATCC
# TF - Cagg_1084: Chy400_3103
>Chy400_3103(Cagg_1084) Score=7.3 Pos=-37 [Chloroflexus sp. Y-400-fl]
AAACATCAGATGATATGATCTTT
>Chy400_3102(COG0730) Score=6.9 Pos=-41 [Chloroflexus sp. Y-400-fl]
AAACATCAGATCATCAGATGAAT
# TF - RhmR: Chy400_0392
>Chy400_0391(rhmE) Score=5.7 Pos=-177 [Chloroflexus sp. Y-400-fl]
CATACCGATCGATGCCCAGG