# TF - Caur_3401: Cagg_0356
>Cagg_0354(acrB) Score=7 Pos=-69 [Chloroflexus aggregans DSM 9485]
ACTTTACGGTATAGTAAAAA
# TF - HpdR: Cagg_2745
>Cagg_2745(hpdR) Score=6.8 Pos=-36 [Chloroflexus aggregans DSM 9485]
CACCACTGATAAGTGGTA
# TF - Caur_1779: Cagg_2888
>Cagg_2888(Caur_1779) Score=6.1 Pos=-104 [Chloroflexus aggregans DSM 9485]
TGTTCGTTTTAAAAGAACA
>Cagg_2889(nuoL) Score=6.1 Pos=-120 [Chloroflexus aggregans DSM 9485]
TGTTCTTTTAAAACGAACA
# TF - MhpR: Cagg_2032
>Cagg_2030(hpaB) Score=5.8 Pos=-135 [Chloroflexus aggregans DSM 9485]
CGTTCGGTTATACCGAATT
>Cagg_2029(Cagg_2029) Score=5.8 Pos=-146 [Chloroflexus aggregans DSM 9485]
AATTCGGTATAACCGAACG
# TF - KojR: Cagg_2268
>Cagg_2268(kojR) Score=6.5 Pos=-90 [Chloroflexus aggregans DSM 9485]
TTAAGCGAACGTTCGCTTTT
>Cagg_2268(kojR) Score=6.5 Pos=-36 [Chloroflexus aggregans DSM 9485]
TAAGGCGAACGTTCGCCCTA
>Cagg_2267(kojE) Score=4.8 Pos=170 [Chloroflexus aggregans DSM 9485]
AAAAGTGACCGTCCGCTTGT
# TF - BfrR: Cagg_3715
>Cagg_3715(bfrR) Score=6.4 Pos=-46 [Chloroflexus aggregans DSM 9485]
GTCAATGGACGACCAATCTC
# TF - Caur_3866: Cagg_0081
>Cagg_0091(COG3459) Score=4.9 Pos=-77 [Chloroflexus aggregans DSM 9485]
AAAGTGAAACATTTCACCGA
>Cagg_0091(COG3459) Score=6 Pos=103 [Chloroflexus aggregans DSM 9485]
TTTGTGAAACGTTTCATCCA
>Cagg_0091(COG3459) Score=5.9 Pos=-3 [Chloroflexus aggregans DSM 9485]
TTTATGAAACGTTACACTCT
# TF - Caur_3587: Cagg_0492
>Cagg_0492(Caur_3587) Score=6.5 Pos=-59 [Chloroflexus aggregans DSM 9485]
ATATTGACAATTGTCAATAT
>Cagg_0491(PF07992) Score=5.9 Pos=-89 [Chloroflexus aggregans DSM 9485]
TTATTGATGTATGTCAATAT
# TF - SufR: Cagg_0961
>Cagg_0961(sufR) Score=6.8 Pos=-64 [Chloroflexus aggregans DSM 9485]
TTTTTATTGACAATAGCTC
# TF - Caur_1157: Cagg_1685
>Cagg_1685(Caur_1157) Score=5.6 Pos=-119 [Chloroflexus aggregans DSM 9485]
CCCTGGAAGCGCTTTCACGG
# TF - Caur_3448: Cagg_0275
>Cagg_0275(Caur_3448) Score=6 Pos=-57 [Chloroflexus aggregans DSM 9485]
CTACTTAACCGATTAAGTGG
>Cagg_0275(Caur_3448) Score=4.8 Pos=-41 [Chloroflexus aggregans DSM 9485]
GTGGTTAATCGGTTAAGTTA
# TF - NrtR: Cagg_0305
>Cagg_0305(nrtR) Score=6 Pos=-47 [Chloroflexus aggregans DSM 9485]
TTAGTGTATTACTAACACTAA
>Cagg_0100(pncB) Score=6.1 Pos=-34 [Chloroflexus aggregans DSM 9485]
AAAGTGTAATAATTACACTAT
>Cagg_1772(nadA) Score=6.3 Pos=-35 [Chloroflexus aggregans DSM 9485]
AAAGTGTAACAATAACACTAA
>Cagg_0030(pncA) Score=5.7 Pos=-37 [Chloroflexus aggregans DSM 9485]
ATAGTGTCAGTTTTACACTAC
>Cagg_1772(nadA) Score=5.2 Pos=-90 [Chloroflexus aggregans DSM 9485]
TTAGTGACCTCTTGACAATAT
# TF - Rex: Cagg_0157
>Cagg_2469(fpr) Score=5.2 Pos=-56 [Chloroflexus aggregans DSM 9485]
CTGTGCTGTATATCACAA
>Cagg_0775(nuoM3) Score=4.9 Pos=-295 [Chloroflexus aggregans DSM 9485]
ATGTGAGGTATGTCACAA
>Cagg_0500(ndh) Score=5.3 Pos=-33 [Chloroflexus aggregans DSM 9485]
TTGTGAACAATTTCACCA
>Cagg_3394(acs) Score=5.3 Pos=-56 [Chloroflexus aggregans DSM 9485]
TTGTTATATCTATCACAA
>Cagg_2669(Cagg_2669) Score=5 Pos=-28 [Chloroflexus aggregans DSM 9485]
TCGTGATGTTTGTCACGA
>Cagg_2026(Cagg_2669) Score=4.7 Pos=-56 [Chloroflexus aggregans DSM 9485]
AAGTGAATAATATCACTA
>Cagg_2026(Cagg_2669) Score=4.5 Pos=-145 [Chloroflexus aggregans DSM 9485]
GTGACACATATTTCACAA
>Cagg_1949(Cagg_1949) Score=5.1 Pos=-68 [Chloroflexus aggregans DSM 9485]
ATGTGGTATATTTCACAT
>Cagg_0991(atpB) Score=4.3 Pos=-105 [Chloroflexus aggregans DSM 9485]
TTGTGAAAGACTGAACAA
>Cagg_1631(nuoA) Score=5.2 Pos=-55 [Chloroflexus aggregans DSM 9485]
TTGTGATATACTTCTCAT
>Cagg_0899(hepT) Score=5.4 Pos=-125 [Chloroflexus aggregans DSM 9485]
TTGTGGCGAATATCACAA
>Cagg_0157(rex) Score=4.7 Pos=-47 [Chloroflexus aggregans DSM 9485]
TTGTGCTACACTTCACAT
# TF - LexA: Cagg_3234
>Cagg_0177(parB) Score=4.6 Pos=-73 [Chloroflexus aggregans DSM 9485]
TGGTACACTTGTTCGG
>Cagg_3654(uvdE) Score=4.8 Pos=-86 [Chloroflexus aggregans DSM 9485]
TCGAACAAATGTACTA
>Cagg_2352(ftsK) Score=4.6 Pos=-152 [Chloroflexus aggregans DSM 9485]
TCGCACAAATATGCTA
>Cagg_3590(polA) Score=4.3 Pos=-207 [Chloroflexus aggregans DSM 9485]
GAGCACATTCGTGCGC
>Cagg_1747(recA) Score=5.1 Pos=-126 [Chloroflexus aggregans DSM 9485]
TCGTACACTTGTGCTA
>Cagg_1747(recA) Score=4.8 Pos=-107 [Chloroflexus aggregans DSM 9485]
TAGCACATATGTACGG
>Cagg_2703(ssb) Score=4.5 Pos=-88 [Chloroflexus aggregans DSM 9485]
TAGCACAATAGTTCGA
>Cagg_3684(Cagg_3684) Score=5.1 Pos=-90 [Chloroflexus aggregans DSM 9485]
TCGAACATGTGTGCAA
>Cagg_0868(ruvB) Score=4.8 Pos=-37 [Chloroflexus aggregans DSM 9485]
GCGTACACCTGTGCGA
>Cagg_1574(Cagg_1574) Score=4.7 Pos=-127 [Chloroflexus aggregans DSM 9485]
AAGAACAATTGTTCTA
# RNA - Cobalamin
>Cagg_1279(btuR) Score=62.7 Pos=-262 [Chloroflexus aggregans DSM 9485]
GCAATTCCATACTCATCGCGGTGACCCGTTAGCCCGGATGCTAGGGCGTAAAGGTGGAAGCTGGTGAAAGTCCAGCGCTGTGTCGCAACTGTAACCGGATGTACTACGCCGGAAGCCAGGACGCCTGCCGCGATGTGTTCTCGTTCA
>Cagg_2179(cbrX) Score=47.3 Pos=-313 [Chloroflexus aggregans DSM 9485]
TGTATCACCCCACCGGTAGGGAGCCCGGAGGAAGCGAAGGGCTTAATTGGGGGAAGTCCGGTCAAAGGCCGGCGCAGTCCACGCTACTGTAGGTCGCCATTGGCGACGAGCCAGAATGCCCGTCCCTACTCGTTCGCTATCAC
# RNA - FMN
>Cagg_2639(ribD) Score=90.1 Pos=-335 [Chloroflexus aggregans DSM 9485]
CAAACCTTCGGGGCAGGGTGAGTCTGGAATTGAGTTTCACCTCAAGACCGGGCAATTCCCGATCGGTGGTATAGCCCACGAGCGGGTGGTCGCATTCGACACCTCGCACGATCCGGTGAAACTCCGGAGCCGACCGTACAGTCGGGATGAAAGAAGGTTGAGTA
>Cagg_2734(ribX) Score=109.1 Pos=-280 [Chloroflexus aggregans DSM 9485]
AAACGATCTTCGGGGCAGGGTGAAATTCCCGATCGGTGGTATAGCCCACGAGCGTGTTGAGAGGCACGCAGGATCCGGTGAAACTCCGGGGCCGACGGTTATAGTCCGGATGTAAAGAAGATCCAG
# RNA - L10_leader
>Cagg_1474(rplJ) Score=35.8 Pos=-218 [Chloroflexus aggregans DSM 9485]
TAGTTTAATCTCTTAGCTGCCTGAGACAGCCGGTGAGCAGGTGCTCGTAATGCTCTATTGGGCACCGGCCGAGGTGGCGTCTGAGATGTGATAGGTGTGAGCAATGTGCTCGTTCTGTCAATAGTGTGCAGCATTTGCTGCGCCGTTCTCGGTCGCTTGGTCTCAGGATGCAAGCGACCGTTTTTTGTTGTATTT
# RNA - PyrR
>Cagg_3362(pyrR) Score=53.1 Pos=-160 [Chloroflexus aggregans DSM 9485]
TGCAACCTTTAATACAGCCCTGTGAGGCTGTGAAGGAGTGAATTGAGTATGAACCAGCGTTTGAACCGGCCCCAACTGCCGTGCTCCCTTTGCCCCGTTCCGGCGGGCAAGGGGTTTTTTGT
# RNA - SAM
>Cagg_1948(metI) Score=69.5 Pos=-181 [Chloroflexus aggregans DSM 9485]
GCACTCATCCAGAGCGGTGGAGGGACCGGCCCGATGAAACCGCGCCAACCCGACGGCATACATCCCTGACGGGTGGCAACTCCGGCAGCATAAGGCTGGCAGATGAGAG
>Cagg_3560(mtnA) Score=84.4 Pos=-135 [Chloroflexus aggregans DSM 9485]
GCTCATCGAGATGGGCTGAGGGACTGGCCCGATGACGCCCGGCAACCCCCAACAGGGAAGGTGCCAAATCCAGCGGCAATGAAGAACATTGGCCGAAAGATGAGAGGA
>Cagg_0970(metY) Score=82.4 Pos=-215 [Chloroflexus aggregans DSM 9485]
GCACTCATCCAGAGCGGTGGAGGGACCGGCCCGTTGAAACCGCAGCAACCCTCGTATGCGTCGCCGCATGCGAACGGTGCTAATTCCGGCAGAAGTGTTCTGGAAGATGAGCG
# RNA - T-box(Gly)
>Cagg_1451(glyS) Score=28.4 Pos=-215 [Chloroflexus aggregans DSM 9485]
CGATGAACCGGAGGAGTACGCCGGAAGGAGTACCCAGCGAGCCGGGAATGGTGTAAGCCCGGCGACTCGGAACGGCGGAACGGCGCCGGGGAGCCG
# RNA - T-box(Ile)
>Cagg_0718(ileS) Score=69.7 Pos=-309 [Chloroflexus aggregans DSM 9485]
CAACGGCGATGACGGGGACGAGTAGCTGCCGCTTGCCCGCCAGCGAGCCCGGGATGGTGGAAGCCGGGTGGAGCCAGCGGTAGTGAATATCACCCCTGAGCCGGCAGGTGAACCGCGGGGTTGGTTGCCCCGCACAGTAGCCGCGCCCGGAATGCCCACCGTTATCGGGGCAGAGCGTTGATCGACGCTCACTGAGTGCGACGCGCGCCCGATTGTGTGCGCCGTCGAAATGGGGTGGTACCGCGGGGTCTATCGGCCTCGTCCCCTTTTG
# RNA - T-box(Trp)
>Cagg_2123(trpB) Score=77.4 Pos=-327 [Chloroflexus aggregans DSM 9485]
ATAACCGACGTTGATCAGGAAGAGTAACAAGCGTGGCGACAGTCCAGCGAGCCGGTGATGGTGCGAGATCGGCGAGTTCGGCGCTTGTGAATGGGCCTGTGAGTCGCACGGCGAACCGGGTTTTCCCGCAGTAGTCGCTGCCGGAGACGCCACCGTTATCAGAGCGCTAGGTGTGGAGCGGCCTTGCCGACAGCACCTGCAGAGTGCGCCGTTTGCGTGAGCTGCGGCGAACGAGAGTGGCACCGCGGTTTATTCCGTCTCTCGA
# RNA - glmS
>Cagg_3243(glmS) Score=17.8 Pos=-356 [Chloroflexus aggregans DSM 9485]
ACTAATAAGTCTAGCGCATGGACTTCACCACGGTGAAGTTGACGAGGACGGAGGTTCCCGGCGCGAGCCGGAGCTAACGGGTGATA
# RNA - TPP
>Cagg_3115(COG0011) Score=70.2 Pos=-184 [Chloroflexus aggregans DSM 9485]
TATGTAGCGAGGGGTGCCGGGAGAGCCTGGCTGAGAGTGCGGCCCAACTGATGCCGCTAACCCTTTGAACCTGATCTGGGTTATGCCAGCGGAGGGATTGCTAAGTGATGTGACGTA
>Cagg_3165(thiM) Score=64.8 Pos=-227 [Chloroflexus aggregans DSM 9485]
ATAGATGCCAGGGGAGCCTGGGGGAGCCGGGCTGAGAGGGTACCTTATGGCTATTGCCACCGGTACCGACCCTCTGAACCTGATCTGGGTTATGCCAGCGGAGGGAGGAGCAGTTCGCAGACTCG
# RNA - yybP-ykoY
>Cagg_2919(ykoY) Score=45.7 Pos=-199 [Chloroflexus aggregans DSM 9485]
AGTTCAAGAGGTTGGGGAGTAGCCGCCTGCGCTGTGCAGGTCGATGCCGCCGTCAAGACGGAATACATTATTCCCGGTTGCATCGAGTACTAGATACTGGCGAGACCGACGCAGCGGTA
# TF - NrdR: Cagg_0279
>Cagg_2767(nrdJ2) Score=5.1 Pos=-137 [Chloroflexus aggregans DSM 9485]
ACACTAGATGTAGTAC
>Cagg_2767(nrdJ2) Score=4.1 Pos=-282 [Chloroflexus aggregans DSM 9485]
GTGCTGGATATGGTAA
>Cagg_2767(nrdJ2) Score=4.8 Pos=-294 [Chloroflexus aggregans DSM 9485]
ATACCAGATTTGGTGC
# TF - HrcA: Cagg_2696
>Cagg_2696(hrcA) Score=7.6 Pos=-55 [Chloroflexus aggregans DSM 9485]
TTAGCACTCTCGCCTCACGAGTGCTAA
>Cagg_0489(groES) Score=7.6 Pos=-81 [Chloroflexus aggregans DSM 9485]
TTAGCACTCTTGAGTTAACAGTGCTAA
>Cagg_0489(groES) Score=6 Pos=-154 [Chloroflexus aggregans DSM 9485]
TTAGCACTCAGTTTCGACGAGTGCTAA
# TF - ModR: Cagg_1371
>Cagg_1371(modR) Score=6.1 Pos=-82 [Chloroflexus aggregans DSM 9485]
AGTACTCACATCGTGAATATA
# TF - RhaR: Cagg_3309
>Cagg_3309(rhaR) Score=7.2 Pos=-140 [Chloroflexus aggregans DSM 9485]
TCGTAA----TCGAAA
>Cagg_3309(rhaR) Score=6.9 Pos=-130 [Chloroflexus aggregans DSM 9485]
TCGAAA----TTGACA
>Cagg_3309(rhaR) Score=6.7 Pos=-120 [Chloroflexus aggregans DSM 9485]
TTGACA----TTGAAA
# TF - MntR: Cagg_1173
>Cagg_3553(mntA) Score=6 Pos=-38 [Chloroflexus aggregans DSM 9485]
ATTTTAGGTTAGGCTAAAAT
>Cagg_1154(mntH) Score=5.6 Pos=-74 [Chloroflexus aggregans DSM 9485]
AATTTAGGGAATACTAAAAA
# TF - FetR: Cagg_3304
>Cagg_3308(hmuV) Score=6 Pos=-57 [Chloroflexus aggregans DSM 9485]
AAATTAGTATATTCTAACTT
>Cagg_2416(fbpA) Score=5.6 Pos=-83 [Chloroflexus aggregans DSM 9485]
ACGTTAGCATATACTAACCC
# TF - Zur: Cagg_2024, Cagg_1460
>Cagg_0322(fmdB) Score=5.5 Pos=-52 [Chloroflexus aggregans DSM 9485]
AAATGATATATTATCTCAATA
>Cagg_0608(yciC) Score=5.8 Pos=-79 [Chloroflexus aggregans DSM 9485]
TAATGATATAACGTATCATTT
>Cagg_0608(yciC) Score=4.5 Pos=-20 [Chloroflexus aggregans DSM 9485]
AATCGAGATAAGGTATCAATG
>Cagg_2028(COG0701) Score=5.8 Pos=-74 [Chloroflexus aggregans DSM 9485]
TATTGACACACTGTATCAATA
>Cagg_2024(zur) Score=5.8 Pos=-2 [Chloroflexus aggregans DSM 9485]
TAATGATCCATAGTATCATTA
>Cagg_2043(znuA) Score=5.9 Pos=-35 [Chloroflexus aggregans DSM 9485]
AATTGAAACATAGTTTCATTA
# TF - AcrR: Cagg_0421, Cagg_2437
>Cagg_2437(acrR) Score=6.9 Pos=-44 [Chloroflexus aggregans DSM 9485]
ATTACTTACCGGTCGGTAAGAATT
>Cagg_0420(Cagg_0420) Score=6.1 Pos=-51 [Chloroflexus aggregans DSM 9485]
GTTACCGACCGGTCGGTCGGTTTT
# TF - HcpR: Cagg_2668, Cagg_2027
>Cagg_2669(Rcas_3898) Score=6.8 Pos=-86 [Chloroflexus aggregans DSM 9485]
AAGTTGCGCTAGCGCAACGT
>Cagg_2026(Rcas_3898) Score=6.5 Pos=-116 [Chloroflexus aggregans DSM 9485]
ATCTTGCGCTAGCGCAACGA
# TF - Cagg_3094: Cagg_3094
>Cagg_3094(Cagg_3094) Score=5.1 Pos=6 [Chloroflexus aggregans DSM 9485]
AAATTGTATACATCAG
>Cagg_3094(Cagg_3094) Score=5.7 Pos=-138 [Chloroflexus aggregans DSM 9485]
ATATTGTATACAATCT
# TF - Cagg_1084: Cagg_1084
>Cagg_1085(COG0730) Score=7.4 Pos=-81 [Chloroflexus aggregans DSM 9485]
ATACATCAGATGATCTGATGTTT
>Cagg_1084(Cagg_1084) Score=7.3 Pos=-36 [Chloroflexus aggregans DSM 9485]
AAACATCAGATGATATGATCTTT