# TF - CymR: Pjdr2_4358
>Pjdr2_5106(yrrT) Score=5.2 Pos=-105 [Paenibacillus sp. JDR-2]
TAAATCCGATTAATAAGGTTGGAAAAA
>Pjdr2_0074(cysK) Score=5.7 Pos=-44 [Paenibacillus sp. JDR-2]
AAAAACCAACTAAATTAGTCGGAATAA
>Pjdr2_5233(ytmI) Score=6.1 Pos=-55 [Paenibacillus sp. JDR-2]
TAATTCTTAGTAAGTTTATAGGAATTA
>Pjdr2_6037(yhcL) Score=5.1 Pos=-148 [Paenibacillus sp. JDR-2]
AATTCCCCATAGAAATAGTCGGATTTA
>Pjdr2_6037(yhcL) Score=5 Pos=-41 [Paenibacillus sp. JDR-2]
TAATTCCAATCAAACAACTTGGATTAG
>Pjdr2_5647(cysH) Score=5.2 Pos=-45 [Paenibacillus sp. JDR-2]
AATAGCATATGAATTTACTTGGAATTA
>Pjdr2_6187(ssuB) Score=4.9 Pos=-53 [Paenibacillus sp. JDR-2]
TAATTCCAAGTAAATCGGTGTGAAAAA
>Pjdr2_0756(ssuB) Score=5.3 Pos=-70 [Paenibacillus sp. JDR-2]
TAATTCCAACTATTCCAATAAGGAAAA
>Pjdr2_0760(ssuA) Score=5.2 Pos=-50 [Paenibacillus sp. JDR-2]
TAAATCCGATTAAACAAATAAGTAAAG
>Pjdr2_4823(subI) Score=4.7 Pos=-96 [Paenibacillus sp. JDR-2]
CATAACCAACTAAACAGGTAGGAATAA
# TF - Zur: Pjdr2_2271
>Pjdr2_3068(yciC) Score=5.1 Pos=-35 [Paenibacillus sp. JDR-2]
TTAATAGTAATGATTACGGAAAA
>Pjdr2_3065 Score=5.8 Pos=-67 [Paenibacillus sp. JDR-2]
CTAATCGTAATAGTTACGAAATA
>Pjdr2_3065 Score=5.2 Pos=-118 [Paenibacillus sp. JDR-2]
TTATACGTAATTATTACGTTCAA
>Pjdr2_3065 Score=5.6 Pos=-162 [Paenibacillus sp. JDR-2]
TTAATCGTAATGTTGACGATTAA
>Pjdr2_3068 Score=5.1 Pos=-35 [Paenibacillus sp. JDR-2]
TTAATAGTAATGATTACGGAAAA
>Pjdr2_3065(adcC) Score=5.8 Pos=-67 [Paenibacillus sp. JDR-2]
CTAATCGTAATAGTTACGAAATA
>Pjdr2_3065(adcC) Score=5.2 Pos=-118 [Paenibacillus sp. JDR-2]
TTATACGTAATTATTACGTTCAA
>Pjdr2_3065(adcC) Score=5.6 Pos=-162 [Paenibacillus sp. JDR-2]
TTAATCGTAATGTTGACGATTAA
# TF - XylR: Pjdr2_5182
>Pjdr2_5182(xylR) Score=6.7 Pos=-113 [Paenibacillus sp. JDR-2]
AGTTTGTCTATTAAACAAACTAAGT
>Pjdr2_5159(xylA) Score=6.7 Pos=-123 [Paenibacillus sp. JDR-2]
AGTTTGTTTAATAGACAAACTAAGT
# TF - Rex: Pjdr2_2450
>Pjdr2_4834(ndh2) Score=5.7 Pos=-64 [Paenibacillus sp. JDR-2]
ATTGTGTAATTTTTCACAAA
>Pjdr2_6270(yjlC) Score=5.4 Pos=-97 [Paenibacillus sp. JDR-2]
ATTGTGAATAATTTCACTTT
>Pjdr2_2160(noxE) Score=4.8 Pos=-42 [Paenibacillus sp. JDR-2]
TATGTGAATAATTTCACAGG
>Pjdr2_2160(noxE) Score=5.8 Pos=-207 [Paenibacillus sp. JDR-2]
ATTGTGAATTAATTCACACA
>Pjdr2_2160(noxE) Score=4.8 Pos=-273 [Paenibacillus sp. JDR-2]
TATGTGAAATTAATCACAAC
>Pjdr2_0068(nadA) Score=6 Pos=-84 [Paenibacillus sp. JDR-2]
TTTGTGCATCAATTCACAAA
# TF - PerR: Pjdr2_1094
>Pjdr2_0784(trxB) Score=5.3 Pos=-69 [Paenibacillus sp. JDR-2]
TTGTAATAATTTTAA
>Pjdr2_5937(yeiH) Score=6 Pos=-91 [Paenibacillus sp. JDR-2]
TTATAATTATTATAA
>Pjdr2_1094(perR) Score=4.1 Pos=-209 [Paenibacillus sp. JDR-2]
TTGGAAGCATTACAA
>Pjdr2_4440(hemA) Score=5.5 Pos=-47 [Paenibacillus sp. JDR-2]
TTATAATCATTCTAA
>Pjdr2_1270(fur) Score=5.5 Pos=-75 [Paenibacillus sp. JDR-2]
TTATAATCATTCTAA
>Pjdr2_1270(fur) Score=5.7 Pos=-91 [Paenibacillus sp. JDR-2]
TTATAATTATTCTAA
>Pjdr2_1270(fur) Score=4.1 Pos=-117 [Paenibacillus sp. JDR-2]
GTGTAATAATGATAA
>Pjdr2_4210(czcD) Score=5.5 Pos=-37 [Paenibacillus sp. JDR-2]
TTATAATCATTCTAA
# TF - MtlR: Pjdr2_6225
>Pjdr2_6226(mtlA) Score=8.2 Pos=-137 [Paenibacillus sp. JDR-2]
TTGTCAAC------ATTGACAA
# TF - MntR: Pjdr2_2278
>Pjdr2_4868(mntA) Score=5.5 Pos=-109 [Paenibacillus sp. JDR-2]
AATGTTGCATCAGAGAAACATT
# TF - LexA: Pjdr2_2621
>Pjdr2_3737(yqjW) Score=4.7 Pos=-37 [Paenibacillus sp. JDR-2]
ACGAACATACTTTCGC
>Pjdr2_3737(yqjW) Score=4.2 Pos=-66 [Paenibacillus sp. JDR-2]
GCGAACATACATTCGG
>Pjdr2_2622(Pjdr2_2622) Score=4.7 Pos=-28 [Paenibacillus sp. JDR-2]
CAGAACAAACGTTCGG
>Pjdr2_2622(Pjdr2_2622) Score=5 Pos=-67 [Paenibacillus sp. JDR-2]
GCAAACATTTGTTCGT
>Pjdr2_2622(Pjdr2_2622) Score=4.8 Pos=-97 [Paenibacillus sp. JDR-2]
AAAAACAAAAGTTCGC
>Pjdr2_2622(Pjdr2_2622) Score=5.1 Pos=-113 [Paenibacillus sp. JDR-2]
ACAAACATAAGTTCTT
>Pjdr2_2622(Pjdr2_2622) Score=4.2 Pos=-129 [Paenibacillus sp. JDR-2]
TAGAACCGGAGTTCGT
>Pjdr2_4666(vsr) Score=5.2 Pos=-35 [Paenibacillus sp. JDR-2]
AAGAACATATGTTCTC
>Pjdr2_4818(uvrC) Score=4.3 Pos=-329 [Paenibacillus sp. JDR-2]
CGAAACATGCGTTCGA
>Pjdr2_3379(recA) Score=4.9 Pos=-84 [Paenibacillus sp. JDR-2]
ACGAATGTATGTTCGA
>Pjdr2_3379(recA) Score=3.9 Pos=-297 [Paenibacillus sp. JDR-2]
GCGAACAATAATTTGT
>Pjdr2_2492(parE) Score=4 Pos=-172 [Paenibacillus sp. JDR-2]
GCGAATTTATGTTATT
>Pjdr2_2621(lexA) Score=5.1 Pos=-72 [Paenibacillus sp. JDR-2]
AAGAACTTATGTTTGT
>Pjdr2_2621(lexA) Score=5.1 Pos=-118 [Paenibacillus sp. JDR-2]
ACGAACAAATGTTTGC
>Pjdr2_2621(lexA) Score=4.4 Pos=-157 [Paenibacillus sp. JDR-2]
CCGAACGTTTGTTCTG
>Pjdr2_2219(addB) Score=5.1 Pos=-90 [Paenibacillus sp. JDR-2]
CAGAACATACGTTTGT
>Pjdr2_1533(yhjD) Score=4.8 Pos=-42 [Paenibacillus sp. JDR-2]
TCGAACGTTTGTTCGC
# TF - HrcA: Pjdr2_2205
>Pjdr2_5425(htpG) Score=7 Pos=-64 [Paenibacillus sp. JDR-2]
TTAGCACTCCAACACGGAGAGTGCTAA
>Pjdr2_2205(hrcA) Score=7.2 Pos=-62 [Paenibacillus sp. JDR-2]
TTAGCACTCGGGCCTAATGAGTGCTAA
>Pjdr2_1050(groES) Score=6.8 Pos=-70 [Paenibacillus sp. JDR-2]
TTAGCACTTCAAGCTTACGAGTGCTAA
# TF - Fur: Pjdr2_2329
>Pjdr2_0424(ywjA) Score=5.9 Pos=-137 [Paenibacillus sp. JDR-2]
TATGATAATGATTATCAAC
>Pjdr2_4366(yfiZ) Score=5.2 Pos=-111 [Paenibacillus sp. JDR-2]
TTTGATAACGATTCTCATA
>Pjdr2_4366(yfiZ) Score=5 Pos=-170 [Paenibacillus sp. JDR-2]
GATGATAATATTTCTCACT
>Pjdr2_0481(Pjdr2_0481) Score=6.4 Pos=-285 [Paenibacillus sp. JDR-2]
ACTGATAATCATTATCAAT
>Pjdr2_0481(Pjdr2_0481) Score=5.5 Pos=-315 [Paenibacillus sp. JDR-2]
ATTGAGAATGGTTATCATG
>Pjdr2_0383(yhfQ) Score=6.1 Pos=-50 [Paenibacillus sp. JDR-2]
ATTGATAATAATTATCATA
>Pjdr2_3247(ycgT) Score=6.1 Pos=-57 [Paenibacillus sp. JDR-2]
ATTGATAATGATTATCACA
>Pjdr2_1270(fur) Score=5.1 Pos=-77 [Paenibacillus sp. JDR-2]
AATTATAATCATTCTAAAT
>Pjdr2_5637(fhuC) Score=5.3 Pos=-88 [Paenibacillus sp. JDR-2]
ATTGATAATTGTTATCACG
>Pjdr2_5637(fhuC) Score=5.2 Pos=-118 [Paenibacillus sp. JDR-2]
CCTGAGAACGATTATCATT
>Pjdr2_0995(efeM) Score=6.2 Pos=-84 [Paenibacillus sp. JDR-2]
ATTGACAATGATTATCATT
# TF - Fnr: Pjdr2_5250
>Pjdr2_2160(naoX) Score=5.4 Pos=-40 [Paenibacillus sp. JDR-2]
TGTGAATAATTTCACA
>Pjdr2_2160(naoX) Score=6.2 Pos=-205 [Paenibacillus sp. JDR-2]
TGTGAATTAATTCACA
>Pjdr2_2160(naoX) Score=5.3 Pos=-271 [Paenibacillus sp. JDR-2]
TGTGAAATTAATCACA
# TF - CggR: Pjdr2_0176
>Pjdr2_0176(cggR) Score=6.2 Pos=-88 [Paenibacillus sp. JDR-2]
TGGGACTTAAAGTGAGTATGCGGGACGTTTAACGTCC
# TF - BirA: Pjdr2_2444
>Pjdr2_3366(bioY2) Score=8.8 Pos=-158 [Paenibacillus sp. JDR-2]
TTGTTAAC------------------GTTAACAt
>Pjdr2_1461(bioA) Score=8.8 Pos=40 [Paenibacillus sp. JDR-2]
TTGTTAAC------------------GTTAACAA
# TF - ArgR: Pjdr2_2315
>Pjdr2_5743(argC) Score=4.8 Pos=-148 [Paenibacillus sp. JDR-2]
TTGTATTAATATGAAT
>Pjdr2_2204(Aflv_0223) Score=4.7 Pos=-51 [Paenibacillus sp. JDR-2]
CTGTATATTTATTCAA
# TF - MhqR: Pjdr2_5975
>Pjdr2_5974(mhqO) Score=5.1 Pos=-49 [Paenibacillus sp. JDR-2]
TATCTTAAATTAAAGATT
>Pjdr2_5975(mhqR) Score=5.7 Pos=-38 [Paenibacillus sp. JDR-2]
TATCTTAAAATCAAGATA
# TF - PurR: Pjdr2_0032
>Pjdr2_0860(purE) Score=9.6 Pos=-411 [Paenibacillus sp. JDR-2]
AAAAACGAACTTTA----------------TAATGTTCGTATTT
>Pjdr2_0032(purR) Score=9.1 Pos=-61 [Paenibacillus sp. JDR-2]
AAATCCGTATAAAA----------------TATTATTCGGATTT
>Pjdr2_6258(purA) Score=9.6 Pos=-187 [Paenibacillus sp. JDR-2]
ATATCCGAACAATT----------------AATTGTTCGTTTTT
# TF - YdfD/YisV: Pjdr2_2789
>Pjdr2_2789(yisV) Score=-1.3 Pos=-60 [Paenibacillus sp. JDR-2]
CCATCCAAATGGTTGGCCCGCATACCAACCA
>Pjdr2_2788(yisU) Score=6.4 Pos=-97 [Paenibacillus sp. JDR-2]
TGGTTGGTATGCGGGCCAACCATTTGGATGG
# TF - CcpA: Pjdr2_3800
>Pjdr2_3908(yqgY) Score=4.3 Pos=-124 [Paenibacillus sp. JDR-2]
ATCATAACGCTTTCAA
>Pjdr2_3535(rhiL) Score=4.6 Pos=-41 [Paenibacillus sp. JDR-2]
ATGTAAACACTTACAT
>Pjdr2_6054(iolJ) Score=4.5 Pos=-236 [Paenibacillus sp. JDR-2]
ATTATAGCGCTTACAA
>Pjdr2_0664(rbsB) Score=4.7 Pos=-35 [Paenibacillus sp. JDR-2]
ATGAAAGCGGTTTTTT
>Pjdr2_3796(acsA) Score=5 Pos=-56 [Paenibacillus sp. JDR-2]
TTGAAAGCGTATTCTT
>Pjdr2_3019(abfA) Score=4.7 Pos=-68 [Paenibacillus sp. JDR-2]
TTGTAAGCGCAATCAG
>Pjdr2_6226(mtlA) Score=4.1 Pos=-33 [Paenibacillus sp. JDR-2]
AAGAAAGCGATTTTAT
>Pjdr2_5571 Score=4.1 Pos=-77 [Paenibacillus sp. JDR-2]
ATGAAAGCGAATACTC
>Pjdr2_4724(odhA) Score=4.4 Pos=-242 [Paenibacillus sp. JDR-2]
ATGAATACGCTTTAAA
>Pjdr2_1934(lplB) Score=4.7 Pos=0 [Paenibacillus sp. JDR-2]
ATGAAAGCGGTCACAA
>Pjdr2_0728 Score=4.6 Pos=-8 [Paenibacillus sp. JDR-2]
TTGTAAACGTGTTCAA
# TF - GlnR: Pjdr2_2618
>Pjdr2_4328(ureA) Score=5.4 Pos=-85 [Paenibacillus sp. JDR-2]
ATGTCATATTACCTAACAT
>Pjdr2_5154(tnrA) Score=5.5 Pos=-303 [Paenibacillus sp. JDR-2]
TTGTTAGATAATCTAACAT
>Pjdr2_5154(tnrA) Score=4.8 Pos=-42 [Paenibacillus sp. JDR-2]
GTGTTAGAAAACATTACAT
# TF - NrdR: Pjdr2_1529
>Pjdr2_4012(nrdI) Score=4.6 Pos=-139 [Paenibacillus sp. JDR-2]
CAACTACATATTGAGT
>Pjdr2_3990(nrdZ) Score=3.8 Pos=-110 [Paenibacillus sp. JDR-2]
TACCGATATGTAGTAT
>Pjdr2_3990(nrdZ) Score=5.1 Pos=-78 [Paenibacillus sp. JDR-2]
ACACAATATATGGTGC
# TF - RbsR: Pjdr2_3988
>Pjdr2_3988(rbsR) Score=6.3 Pos=-37 [Paenibacillus sp. JDR-2]
ATGTGTAAACGGTTCCACAT
# TF - TnrA: Pjdr2_5154
>Pjdr2_2874(glnQ) Score=4.7 Pos=-63 [Paenibacillus sp. JDR-2]
TGTTATCTAACCTAACA
>Pjdr2_5917(nasD) Score=5 Pos=-310 [Paenibacillus sp. JDR-2]
TGTTATTATATATAACA
>Pjdr2_5917(nasD) Score=4 Pos=-249 [Paenibacillus sp. JDR-2]
TGTCAAGTATGTTGACA
>Pjdr2_2174 Score=4 Pos=-223 [Paenibacillus sp. JDR-2]
TGTCAATAAACTTAACA
>Pjdr2_2174 Score=4 Pos=-159 [Paenibacillus sp. JDR-2]
TGTGACCTATATTGACA
>Pjdr2_2141(nrgA) Score=4.2 Pos=-159 [Paenibacillus sp. JDR-2]
TGTGAAAAAACTTAACA
>Pjdr2_2141(nrgA) Score=4.5 Pos=-34 [Paenibacillus sp. JDR-2]
TGTTAGTAAACATCACA
>Pjdr2_5833(oppA) Score=4.4 Pos=-183 [Paenibacillus sp. JDR-2]
TGGTATATTAATTAACA
>Pjdr2_3327 Score=4.9 Pos=-55 [Paenibacillus sp. JDR-2]
TGTTATATAAAGTAACA
>Pjdr2_3323 Score=4.1 Pos=-179 [Paenibacillus sp. JDR-2]
TGTGATCTATTGTTACG
>Pjdr2_3323 Score=4.3 Pos=-96 [Paenibacillus sp. JDR-2]
TGTAAGATATATTGACG
>Pjdr2_3622 Score=4.9 Pos=-169 [Paenibacillus sp. JDR-2]
TGTTATGAAATGTAACA
>Pjdr2_3622 Score=3.9 Pos=-31 [Paenibacillus sp. JDR-2]
AGTTAACAAATGTGACA
>Pjdr2_6138 Score=5.1 Pos=-47 [Paenibacillus sp. JDR-2]
TGTTATCTATTCTAACA
>Pjdr2_2655(thyB) Score=4.5 Pos=-11 [Paenibacillus sp. JDR-2]
TGATATAAAAAGTGACA
>Pjdr2_5154(tnrA) Score=5.7 Pos=-302 [Paenibacillus sp. JDR-2]
TGTTAGATAATCTAACA
>Pjdr2_5154(tnrA) Score=5 Pos=-41 [Paenibacillus sp. JDR-2]
TGTTAGAAAACATTACA
>Pjdr2_0557(urtA) Score=4.2 Pos=-286 [Paenibacillus sp. JDR-2]
TCTTATATTTTCTTTCA
>Pjdr2_0557(urtA) Score=3.9 Pos=-113 [Paenibacillus sp. JDR-2]
TGTCATGTATATTGACG
>Pjdr2_4328(ureA) Score=5.2 Pos=-84 [Paenibacillus sp. JDR-2]
TGTCATATTACCTAACA
>Pjdr2_4626(ywdK) Score=3.9 Pos=-39 [Paenibacillus sp. JDR-2]
TGTAAGATTATACACAA
>Pjdr2_5903(ywrD) Score=3.6 Pos=-34 [Paenibacillus sp. JDR-2]
GGTTAGTAAACCTGACT
>Pjdr2_4828(appA) Score=4.6 Pos=-255 [Paenibacillus sp. JDR-2]
GGTGAGAAAATGTTACA
# TF - IolR1: Pjdr2_1954
>Pjdr2_1948(iolD) Score=5 Pos=-108 [Paenibacillus sp. JDR-2]
GTTAAGCGCTTAAC
# TF - HisR: Pjdr2_0880
>Pjdr2_0159(hisZ) Score=5.6 Pos=-37 [Paenibacillus sp. JDR-2]
CACTTTAATATACTAAAGTA
# TF - CzrA: Pjdr2_1132
>Pjdr2_1130(cadA) Score=6.7 Pos=-41 [Paenibacillus sp. JDR-2]
TATATGAGCAAGTATTCATATA
>Pjdr2_0376(czcD) Score=6.1 Pos=-44 [Paenibacillus sp. JDR-2]
CATATGAATAGTTGTTCATATA
# TF - SdpR: Pjdr2_5471
>Pjdr2_5471(sdpR) Score=6.4 Pos=-54 [Paenibacillus sp. JDR-2]
ATTTAGAATATTATCTAAAT
# TF - YwrC: Pjdr2_5904
>Pjdr2_5904(ywrC) Score=4.9 Pos=-77 [Paenibacillus sp. JDR-2]
ATGCATATGGTAA
# TF - GltR: Pjdr2_3123
>Pjdr2_3123(gltR) Score=5.4 Pos=-50 [Paenibacillus sp. JDR-2]
GATATCATTTTTTCAGATATT
>Pjdr2_3122(yrpB) Score=5.3 Pos=-111 [Paenibacillus sp. JDR-2]
GCTATCTCTTTTCGGGATAGC
>Pjdr2_3124(Pjdr2_3124) Score=5.4 Pos=-101 [Paenibacillus sp. JDR-2]
AATATCTGAAAAAATGATATC
# TF - YwbI: Pjdr2_1917
>Pjdr2_1918(cidA) Score=5.6 Pos=-60 [Paenibacillus sp. JDR-2]
AAATGTATTTTACCTAT
# TF - OhrR: Pjdr2_1135
>Pjdr2_1133(trxB) Score=6.2 Pos=-112 [Paenibacillus sp. JDR-2]
TAAATTGTTTACAATTAA
# TF - RmgR: Pjdr2_1800
>Pjdr2_1802(ytcQ) Score=6.7 Pos=-141 [Paenibacillus sp. JDR-2]
TCAATT-------------TCATTA
# TF - CodY: Pjdr2_3461
>Pjdr2_0817(suhB) Score=4.6 Pos=-129 [Paenibacillus sp. JDR-2]
AATATTTTAAAAATA
>Pjdr2_1025(Pjdr2_1025) Score=4.6 Pos=-607 [Paenibacillus sp. JDR-2]
AATTGACAGAATATT
>Pjdr2_6138(crnA) Score=4.7 Pos=-199 [Paenibacillus sp. JDR-2]
AATTGTGTGAAAATT
>Pjdr2_6138(crnA) Score=5.3 Pos=-103 [Paenibacillus sp. JDR-2]
AATATTCAGAAAATT
>Pjdr2_3723(Pjdr2_3723) Score=4.8 Pos=-131 [Paenibacillus sp. JDR-2]
AATTTACAAAAAATT
>Pjdr2_0438(ushA) Score=5.2 Pos=-96 [Paenibacillus sp. JDR-2]
AATTTTCAGATAATT
>Pjdr2_4798(metI) Score=4.4 Pos=-6 [Paenibacillus sp. JDR-2]
AACTTTATGAAAATT
# TF - GltC2: Pjdr2_1709
>Pjdr2_1709(gltC2) Score=4.6 Pos=-100 [Paenibacillus sp. JDR-2]
ATATTAATATCAAAT
>Pjdr2_1708(gdhA) Score=4.6 Pos=-82 [Paenibacillus sp. JDR-2]
ATTTGATATTAATAT
# TF - AraR: Pjdr2_4208
>Pjdr2_4209(araK) Score=4.8 Pos=-100 [Paenibacillus sp. JDR-2]
TCACATGTACATACAAGTTA
>Pjdr2_4207(araD) Score=5.3 Pos=-62 [Paenibacillus sp. JDR-2]
AAACATGTACGTACAAGTGT
>Pjdr2_2502(araA) Score=5.6 Pos=-83 [Paenibacillus sp. JDR-2]
TAAGTTGTACGTACAACTTA
# TF - YhcF: Pjdr2_3930
>Pjdr2_3932(yhcH) Score=5.5 Pos=-44 [Paenibacillus sp. JDR-2]
GTGTACTATTCAACTATAACAC
# TF - RhgR: Pjdr2_4099
>Pjdr2_3535(rhiL) Score=9.2 Pos=-110 [Paenibacillus sp. JDR-2]
GTCTGTTTTTT----------CACTGGTTATT
>Pjdr2_3535(rhiL) Score=9.3 Pos=-89 [Paenibacillus sp. JDR-2]
CACTGGTTATT----------CTCTCCTTTTT
# TF - AdaA: Pjdr2_5363
>Pjdr2_5363(adaA) Score=1.7 Pos=-83 [Paenibacillus sp. JDR-2]
TTTcGtaATCTTGCgc
>Pjdr2_5362(alkA) Score=-1.8 Pos=-84 [Paenibacillus sp. JDR-2]
gcGCAAGATtaCgAAA
# TF - YvfU: Pjdr2_0719
>Pjdr2_0716(yvfR) Score=7.9 Pos=-140 [Paenibacillus sp. JDR-2]
ATGACATTTGTCAT
# TF - FapR: Pjdr2_3495
>Pjdr2_3495(fapR) Score=4.6 Pos=-91 [Paenibacillus sp. JDR-2]
TATTTAGTACCAGGTT
>Pjdr2_4960 Score=4.5 Pos=-118 [Paenibacillus sp. JDR-2]
TATCAGGTACTAATTC
>Pjdr2_1440(fabHB) Score=4.7 Pos=-56 [Paenibacillus sp. JDR-2]
GTATTAGTACCAGGTA
# TF - CtsR: Pjdr2_5718
>Pjdr2_5718(ctsR) Score=8.5 Pos=-80 [Paenibacillus sp. JDR-2]
AGTCAAA---AGTCAAA
>Pjdr2_0175(clpP) Score=0.7 Pos=-85 [Paenibacillus sp. JDR-2]
TTTGACT---TTTGACT
# TF - CsoR: Pjdr2_5324
>Pjdr2_2774(copA) Score=5.2 Pos=-85 [Paenibacillus sp. JDR-2]
ATACCCCCAGTAGGTAT
>Pjdr2_5324(csoR) Score=5.9 Pos=-59 [Paenibacillus sp. JDR-2]
ATACCCCTAGGGGGTAT
>Pjdr2_5324(csoR) Score=5.6 Pos=-23 [Paenibacillus sp. JDR-2]
ATACCCCCTGGAGGTAT
>Pjdr2_3010 Score=5.5 Pos=-69 [Paenibacillus sp. JDR-2]
ATACCCATGGGGGGTAT
# TF - RhaR: Pjdr2_3763
>Pjdr2_3540(rhaEW) Score=4.1 Pos=-66 [Paenibacillus sp. JDR-2]
CAAATATAAACAAACATGA
>Pjdr2_3763(rhaR) Score=4.6 Pos=-204 [Paenibacillus sp. JDR-2]
CAAAAATAAACAAACATGT
>Pjdr2_3763(rhaR) Score=4.3 Pos=-174 [Paenibacillus sp. JDR-2]
CAAACAAAAACAAATCTAA
# TF - YfmP: Pjdr2_6009
>Pjdr2_6009(yfmP) Score=6.5 Pos=-69 [Paenibacillus sp. JDR-2]
AAGTTAACGTTGACGTTAACAT
>Pjdr2_1878(yfmO) Score=6.5 Pos=-107 [Paenibacillus sp. JDR-2]
AAGTTAACGTTGACGTAAAGAT
# TF - YtcD: Pjdr2_0323
>Pjdr2_0322(ytbD) Score=5.1 Pos=-92 [Paenibacillus sp. JDR-2]
AATAGTGCGTACTAGT
>Pjdr2_0323(ytcD) Score=5.1 Pos=-82 [Paenibacillus sp. JDR-2]
ACTAGTACGCACTATT
# TF - HxlR: Pjdr2_1186
>Pjdr2_1185(hxlA) Score=5.6 Pos=-85 [Paenibacillus sp. JDR-2]
AAAGTGCGTACTTC
# TF - YybR/YdeP: Pjdr2_4452
>Pjdr2_4452(yybR) Score=6 Pos=-72 [Paenibacillus sp. JDR-2]
TAGTATTAAAAAGGATACTA
>Pjdr2_4453(yfkO) Score=6 Pos=-145 [Paenibacillus sp. JDR-2]
TAGTATCCTTTTTAATACTA
# TF - YodB/CatR: Pjdr2_1364, Pjdr2_4807
>Pjdr2_1365(ribB) Score=4.7 Pos=-183 [Paenibacillus sp. JDR-2]
AGTTACTATTAGTAACG
>Pjdr2_4953(azoR1) Score=5.1 Pos=-47 [Paenibacillus sp. JDR-2]
AGTTACAAAAAGTTACT
>Pjdr2_4807(yodB) Score=4.2 Pos=-134 [Paenibacillus sp. JDR-2]
ACTTACTTTAGTCAAGT
>Pjdr2_2046(catE) Score=5 Pos=-37 [Paenibacillus sp. JDR-2]
ATTTACAAAAAGTAACT
# TF - YybA: Pjdr2_5021
>Pjdr2_5021(yybA) Score=6.7 Pos=-47 [Paenibacillus sp. JDR-2]
TTATTGTTGTAAATGCAACAAATT
>Pjdr2_5022(yyaT) Score=6.7 Pos=-109 [Paenibacillus sp. JDR-2]
AATTTGTTGCATTTACAACAATAA
# TF - YhgD: Pjdr2_1195
>Pjdr2_1195(yhgD) Score=4.7 Pos=-66 [Paenibacillus sp. JDR-2]
TGACCGAAATTGATTTTTAGTCA
>Pjdr2_1196(yhgE) Score=5.3 Pos=-58 [Paenibacillus sp. JDR-2]
TGACCGAAATACGAATTTAGTCA
# RNA - FMN
>Pjdr2_2349(ribD) Score=77.1 Pos=-452 [Paenibacillus sp. JDR-2]
TTACCTTCGGGGCAGGGTGAAAATCCCAACCGGCGGTGATCGAGCGGCGTCTGCACAACAGGAGTCACCTGCGTGCGGCGCTTTCTCGTCAGTCCGTGACCCGGGCCATCCCATGCAAGAGCGATTCATCGCATTGCGCGGGAAGGAACGGTGGACCTGGTGCAAATCCGGGACCGACAGTATAGTCTGGATGGGAGAAGGGGACACA
>Pjdr2_2015(impX) Score=106.4 Pos=-344 [Paenibacillus sp. JDR-2]
AGGATCTTCGGGGCAGGGTGAAATTCCTGACCGGCGGTAAACGTTAATTCTGCTTGGCAGAGGATAGCAAAGCCCGCGACTCCCTGAGCTGACTAACAGCAAGGGGACTGACTTGGTGCAACTCCAAGGCCGACGGTATAGTCCGGATGATAGAAGATCGCTTA
# RNA - TPP
>Pjdr2_5407(tenA) Score=54.2 Pos=-203 [Paenibacillus sp. JDR-2]
GCATAATGCGTGCGGGTGCTGGATAAAGTCCGGCTGAGATAGGCAACTTGTTTGCCTGACCGTTAATCTGAACCAGGTAATGCTGGCGTAGAGAACCGATCGAATTACAGC
>Pjdr2_0731(thiC) Score=81.3 Pos=-407 [Paenibacillus sp. JDR-2]
GGAATTCCACTAGGGGCGCCCGCAAGGGCTGAGATAAGGCGTAGCCTTGGTCCCTTTGAACCTGATCTGGGTTATGCCAGCGTAGGAAAGTGGTCTTGTGCGCGT
>Pjdr2_3510(thiY2) Score=60.8 Pos=-263 [Paenibacillus sp. JDR-2]
GTGAATAGCACCGGGGAGCTGGTTGAGGCTAGCTGAGAGGGAATTCCGAAGAAAATTCCGACCCTTATACCTGATCTGGATAATGCCAGCGTAGGAATTGTTATTAAGGTATGC
# RNA - Cobalamin
>Pjdr2_3355(btuF) Score=95.1 Pos=-357 [Paenibacillus sp. JDR-2]
ACGAATAAATCATGGAACAGGTGCTGCAAGAGCCGTAAGGCTGTTGCAAGCTTAATAGGGAAGTCCGGTTAAAATCCGGCACGGACCCGCCACTGTAAGAAGCGGTCTAAGTTTATTTAGACCCGTGTGCCAGCTTAAGTCACTGAATGCAAGATTCGGGAAGACGCTGGCGCTACTGCTTCAAGTCAGGAGACCTGCCTGTTCGCATAACGCTGTA
>Pjdr2_2684(Pjdr2_2684) Score=102.5 Pos=-365 [Paenibacillus sp. JDR-2]
ATACGAGATAAGTATCAGGTGCCAATGATACCTTCCGCCGGTTAGGGCGATGGTATTGGATTGGTTAAAAGGGAAGTTGGGTGAGAATCCCACGCGGTCCCGCCGCTGTAAGAGACGAGTCTATGCGCATATCCACTGGGCAACCGGGAAGGGTGCATAGGCATTGACGCTCGAGCCAGAATACCTGCCTGATTCTTTTTTACACCACA
# RNA - PreQ1
>Pjdr2_4316(queC) Score=50.1 Pos=-137 [Paenibacillus sp. JDR-2]
TTCAGGAGAGGTTCGCGAACTCCCTCTATAAAAAACTAAGAACTG
# RNA - Lysine
>Pjdr2_2916(lysP) Score=99.4 Pos=-317 [Paenibacillus sp. JDR-2]
GATGAGGTAGAGGTCGCGTTGTTGATCAGTAGATCAGGGGAGGTCCAGTAAGACCGACGATCCCGATTGAAAGGCAGCATCGCCGAAGCCGTCCGGTATTACTGACCGTGGCAGGCTGGGGCCGTCTCCGAAAAGGAACGGAACTGTCATATTGCTTTTAATCAACGGCAATATGTTGTGCTATCTTGATAGT
# RNA - SAM
>Pjdr2_4799(metA) Score=82 Pos=-207 [Paenibacillus sp. JDR-2]
TTTCTTATCAAGAGCAGGCGGAGGGACTAGCCCGATGAAGCCCGGCAACCGGCGTAAGCACGGTGCTAATTCTTGCGGAAACATTAGTTTCTGAGAGATGAGGG
# RNA - Purine
>Pjdr2_0851(pbuG) Score=76.6 Pos=-253 [Paenibacillus sp. JDR-2]
CTAATTTAATAATAACTTTTCGTATAATCTCAAGAATTGGCTTGAGAGTCTCTACTCGATCACCGTAAATGATCAGGCTACGAAACAGTGGAAGAGTTGCCG
>Pjdr2_1876(adeC) Score=62.9 Pos=-209 [Paenibacillus sp. JDR-2]
TACAATAGAATCCAATATTGCGTATAACCTCGGCAATACGGGCCGGGGGTTTCTACCGGGAACCGTAAACTCCCGATTACCAGCATGCTTCTTTCGGCA
>Pjdr2_1053(xpt) Score=76.7 Pos=-243 [Paenibacillus sp. JDR-2]
ATGCATTTTTTAAAATGACTCATATAATCATGGGAATATGGCCCATAAGTTTCTACCGGATAACCATTGCAACTATCCGACTATGAGTGATCGCGTTTTACATTT
>Pjdr2_0338(pbuO) Score=56.9 Pos=-220 [Paenibacillus sp. JDR-2]
CAGCTAACATCACTATCATTCGTATATCCTCATCAATATGGCGTGAGGGTCTCTACAAGGAGCCAAAAATCCTAACTACGAATAAGGGATACGTGTACCA
>Pjdr2_0860(purE) Score=72.2 Pos=-288 [Paenibacillus sp. JDR-2]
CTAAATATGATGAAAGATCTCGTATATCCTCGGGAAAAAGGCCCGAAAGTTTCTACCCGAAAACCTTTATTTTCGGACTACGAGTTGATGGAACAAATATAC
# RNA - glmS
>Pjdr2_5628(glmS) Score=67.6 Pos=-376 [Paenibacillus sp. JDR-2]
TCACGTTTTATAAGCGCCAGAGCTTCAAGGGGGATGACGCCTTCCAATCTTATTTATAAGAATGGGGAAGGGTCACACGAGGAAGCTGACGAGGTGAAGGTGTTCGAATTATTCGGCGGGGACCTTCCGGTTATAGCAAAGCCAACCGAAAGCCGATACGCAAAAAGATTGGGCGACCGATCTCACAAACGTCCGGCAGGCTGCAC
# RNA - GEMM_RNA_motif
>Pjdr2_3934(tlpA) Score=74.4 Pos=-181 [Paenibacillus sp. JDR-2]
AAACTGAAAAAGGCAAACTTGCCGAAAGGCAAGGACGCAAAGTTATGGGCCTAATGCTGCATAGAAGCGATGGCTGCCAGACCGCCGGA
# RNA - PyrR
>Pjdr2_3865(pyrR) Score=60.2 Pos=-229 [Paenibacillus sp. JDR-2]
CAGTACCTTTAAATCAGCCCCGTGAGGCTGGCAAGGTAGCGTGAATAACAGATCTGCCACACTTAGAACAGGGCCTTAGCCTAACCGTATCCTGCTGGGATAGCGGCGGTTAAGTCGACCCTCTATGTGTGGCTGGTCTCAGGCTCCTTGCGTTGTTGGCAAGGAGCCTTTTTTCGT
# RNA - ylbH
>Pjdr2_3502(ylbH) Score=70 Pos=-270 [Paenibacillus sp. JDR-2]
TACAAAAAAATCGGACGCTCATTTCTGAGCGTCCTTTCATGGGAGAGGAGAAACCGGACGAAGAGCTTATGGGGAAACGTAAGTCTTCTCCGCGG
# RNA - ydaO-yuaA
>Pjdr2_0318(ydaO) Score=81.4 Pos=-340 [Paenibacillus sp. JDR-2]
GTTCATATTCGCTGAGTTTCCGTTAGAAACGGAGAGCAGGGGAACCAATTGCGATAGGCAGGAACGTTCATGCTTGTCGCCGGGGTGAATCGGCAAGCCGGCCGCATGATTGCGGCAGCAAGCCGTAGGGCGACTCTAGACGCCCGAATCCGTCAGCTAACCTTGTAAGCGTTGATAGAGAGGGTGAAC
>Pjdr2_0116(COG0791) Score=67.8 Pos=-163 [Paenibacillus sp. JDR-2]
ATAAAACAAACTGCCTAATTCCTTGTACTGGAAACGGGGGAACCACCCCTGGGTGAATTGACTTCGACGTCCGAATGATTGTATCGGCGCCCGAGAAGTCATAGGGATCCTTCAACCGAACCCCACAGCTAACCTCGTCGGCATTGGAAGGAGCTTTA
>Pjdr2_5396(kamA) Score=85.3 Pos=-323 [Paenibacillus sp. JDR-2]
TAATTACAATAAGCTTAGTTCTCGGCGTTGCCGAGAAGCGGGGAAACCAATCTTTTGGGGCGAATCAGCCGGTTATCGGCTGTAGGGAACCATCTATCCCGAGTCCGTCAGCTAACCTCGTCAGCTTTGAGATGGGTCTTT
>Pjdr2_4814(ktrB) Score=83.2 Pos=-233 [Paenibacillus sp. JDR-2]
CGAATCGTATCAGCCGAATTTCTTTTTTGAAAACGGGGGAACCAAACCGCTGTCCGGAGCAATCCGCCAGCATGGGGTGAATTTCGAGCATTCCGCTTGAATAGGGCTGCCTTTCCAGGCCCGAATCCGTCAGCTAACCTCGCAGGCTGTGTGGAACAGGACT
>Pjdr2_5988 Score=81.9 Pos=-306 [Paenibacillus sp. JDR-2]
TGTCTTTATCGCTTAATCCCTTTTACGGGGGAACGGGGGAACCAATCGGACAGCCGGCTGTTAAGCGCAGCCAGCCAATCCACGGGGTGAATCGCCGGCTCAGCTCCATCTGAGCATGTCGGCGTAGGGCGACTCTTACGCCCGAATCCGTCAGCTAACTTCGTCAGCGTACCAAGAGAGGCAACGA
# RNA - ykkC-yxkD
>Pjdr2_5861(ykkC) Score=85.4 Pos=-180 [Paenibacillus sp. JDR-2]
TAGTGGTTTTCTAGGGTTCCGCTAAGCGAGATGCTTAGGTCTGGTCCGAGGGAAAACTCACAGCAATAGCTGTGATCACGGAAGGATAAAAACCTGGGAGTCGC
# RNA - L10_leader
>Pjdr2_5694(rplJ) Score=68.4 Pos=-214 [Paenibacillus sp. JDR-2]
TAACATTCGAATACGCATACCGTAGACAGTAGGTGCCGCAAGGCTTAATTTCCTACCGAGGTGTTATGATAAATACAGCTTGCGCGTGATTAACTTCACGGCAGCGATATATCATGGCCTTCGCAGTCGCTGTGGAGGCCTTTCTCATGCACCC
# RNA - L20_leader
>Pjdr2_1288(infC) Score=39.4 Pos=-134 [Paenibacillus sp. JDR-2]
TGCACAAGCAGAAGCACCCGCTTCTCACCTTTCGGTTATGCCGACTGGTTTGCGATAACTGACTAGCTTAACGAGTTGCTTCCCTGGGA
# RNA - L21_leader
>Pjdr2_4413(rplU) Score=33.8 Pos=-97 [Paenibacillus sp. JDR-2]
GGACATGCATGAACCGCTCCAATCGGGTATAAGCGCGGCAGCTTTTGCTGCAGCCACCTGGATTAGGCGAGTCTTCGACAATAA
# RNA - T-box(Arg)
>Pjdr2_5355(argS) Score=98.7 Pos=-309 [Paenibacillus sp. JDR-2]
TAACATCGAGGAACGGGACAGTAGCAGGATGATGCACATGAGCAGCGAGCCGGGTTGGTGAAAGCCGGCGATGGCGCATTTTGCGAAGAGGACCCGGGAGATGGCTTGCCGAACCGATTTTCGTTATACAGTAGGCCTGCCCGGTTCAGTACCGTTACAACGGCGAGATGCTTATAGCAGCGCGTTTATTTGTACTTCCGCCTGCCAATAAGCAACAAGAGTGGCACCGCGGGATTAACCCCCGTCTCTTACGA
# RNA - T-box(Asp)
>Pjdr2_4376(hisS) Score=78.8 Pos=-495 [Paenibacillus sp. JDR-2]
TTCTGATTCGTTGATGGAACAAAGTAATCCCGTACACGTACCCAGAGAGAGGCGCCAAGGCTGCAAGCGTCTTTATGGTGACAGGATGAATCGACCTTCCGGAGAACAGACGGTGAACGGATGATCCGCAGGATCATTGCCAATAGCCAGTCTGCGTGTAACGGGCGTTAACCGTTAATGAGCGGACTAGATTGTCCGGAATATGGGTGGCACCACGGGAGTTCAACTCTCGTCCCTAAC
# RNA - T-box(Cys)
>Pjdr2_5705(cysE) Score=48.3 Pos=-456 [Paenibacillus sp. JDR-2]
TTAAAAAGCCATGAACAGGAAAAGTACGTTTTGCCGGATTTACAGAGAGGACAATCAGCATTTGCCTATAGCCTAGTTAAGGATTGGCATGTAGGGATGCGGGCTGCAAGTTGTCTAGTTCGGGGGACGGAAAATTGCACCTGGGAGCTTTGTTCCGATCCGTAATCCTACCGCTTCGTATACCGGAGCCGGCGGAGCGGGGTAGGCAGCAACGTATCAGCCAACGTTACAGGCTTTAAGACGGACAGCCGGATTAGGCTGGGCCAAAGCTCGTTGTTGAGCTATGGTTCGTAATCTGGTCGTTCAAGCAGAGTGGAACCGCGACGTTACACGCCCGCCTCTGCA
# RNA - T-box(Gly)
>Pjdr2_2239(glyQ) Score=60.9 Pos=-281 [Paenibacillus sp. JDR-2]
TATGGACAGTGATGGAGAAAGTAGCAGTTGATGCCTTGAGCAAGCGATCCGGGGACAGTGGAAGCCCGGGCAGGCTAAACATGCGAAAAGGCACTCCGGAGTCAGTTAACGAAAAGAGGATTTTCGCACGCTGCTGGAATGAGCAGCGACAAGCGGAAGTCAAGTAGGGTGGAACCGCGGGAGTCAGCTCTCGTCCCTACGTC
# RNA - T-box(Ile)
>Pjdr2_4149 Score=119.8 Pos=-282 [Paenibacillus sp. JDR-2]
GCGAAATGCGATGACGAGGACAAGTAAATCCGGAAAATACCGATCAGTGAACTGCCGGTTGGTGCGAGGCAGCAGGGAGCCGGATTGAATAATCACCTCCGAGCAGGCCATCGAACTTCAAGTAGACTGGCCCGGGATTCAGCCGTTACAAAGAAGCATCGTTGGTGGACGATGGCGAAGAGGACGTTTTTACGTCAATTTGGGTGGTAACGCGGAGCAGCTCCGTCCCTTAT
# RNA - T-box(Leu)
>Pjdr2_2189(leuS) Score=119.8 Pos=-287 [Paenibacillus sp. JDR-2]
TAATGGCGTTGAAGAGGAGCAGTAATGTCGCGGAGCAAGGCTAAGAGAGCCGGCGGTTGGTGTAAGCCGGACCTGCAGCGATATGAATCTCGCCTTGGAGCTTTGCGTTATTACGCAACGATTAGCCTGCGTTAAAGGCAATGAGTGAACGGAAGGCAAAGCATGCCGGACGTTAACTAGGGTGGTACCACGGGAATAATCTCCCGTCCCTAGCGA
>Pjdr2_4086(ilvB) Score=87.7 Pos=-332 [Paenibacillus sp. JDR-2]
AAAAGAAGCGTGGAAGAGAAATAGCGGCATGCGGCTTATGCACAGAGAGCAGAGGGATTGGTGGAACCTTTGCCGTAAGCGATGGACGCGGTCATCTCGGAGCTGTTGACCGAAAGCTGAAGTTCAGCCAAGTAGGCTCAACCGGAATTGCACACGTTAACGTGCAGCAGGCAGGAGCATTCCTGCCTCTTGAGACCGGATTCGCGAGATTCCGGTGAACCAGGGTGGTACCGCGAAGACTAAACCCCTTTCGTCCCTTAT
>Pjdr2_1026(leuA) Score=56.2 Pos=-364 [Paenibacillus sp. JDR-2]
ATTGAACGAACAGGCAGAGCCTGAAAGAAAACAATTGCTGCTGCAGAGAGCTGCGGGGTGGTGCGACGCAGTCGAAGCTTAAGCTTGAACTCGCCTGGGAGCGGAATGATGGAGGCCGGCTGGCTGCTTAACGGCAGTAAAGCATATGGCGAGTACATCGTTACGGTAAACCTCCGTCATCGGGTGTTCAAGCGGGTCGGAACCCGCATGAAGCTTAAGGCTTAGCCAGCACGGCTAGCTGCTTCTCGAAGGTTCCGGCCAATGAGAGTGGTACCACGGCAGCTCATTTACGGGCCTGTCGTCTCTTACAC
>Pjdr2_1302(ilvB) Score=84.6 Pos=-353 [Paenibacillus sp. JDR-2]
TATCGGCAATGATGAGGACGAAGTGTTAAGGGCTCTTTTGTTCAGAGAGCGGATGGATCAGCTGCAACCATCGCCAAAACCCCTTTTCTACGAGCTCACCTCGGAGCTGTTTTCCTGAAAAGCAACACTGTCAATGTTGGTTATTAGGGAAAATCGCAAGACACGCGTTATTGTGTCAAAGGTATGGGCGTTTTGTGCGCACACGTTCATTACCTATGGAGGTTGTACATCGCAAGATGTATAACGAATTTGGGTGGTACCACGGAAGATATAACCTTTCGTCCCTCAGGC
# RNA - T-box(Lys)
>Pjdr2_2936(asd) Score=88.2 Pos=-382 [Paenibacillus sp. JDR-2]
GAAATGCAACGACGAGACGAGTAGGTAAATCAATTCTTATCCAGAGAGCTCCGGTACGCTGAAAAGGAGTAAAGAGTTGTTTATTGAAGAAAGACTCTGAGCAGCGCATCGGAACCGGTCTGGCCGGGGATGGTGTGACAGGAGCTCCTGTTATAGAGCTAGAGTATAAGCATTCGATTGCAATGCCGTACTTGAAGAGGCTGATATGGCGACATATCCGCGAATTTAGGGTGGTACCACGGGTATTCAAATCTCGTCCCTGAGAC
>Pjdr2_4142(glnS2) Score=92.9 Pos=-314 [Paenibacillus sp. JDR-2]
TGGAAATGCGATGACGAGAAGAGTAAGGGAATAACGTTCTCAAACAGAGAGCTCCGGAAGCTGAGAAGGAGCGGAGAACCATTCCACGAAACAAGCCTCTGAGCAGCATGACGGATCCTTACGGGTGATGGCATGACGGGAGCTCCCGTTACAGAGCTAGAGTATAACCATTGCATGCAATGCCGTACTTGAAGAGGTTAATATGGCGACATATTAACAAACTGGGGTGGCACCGCGGAACTTCGTCCCCAAG
# RNA - T-box(Met)
>Pjdr2_2273(metS) Score=75.4 Pos=-331 [Paenibacillus sp. JDR-2]
CATATTCGATGAACGGATAAGTAAGATGAAGATACCATAACAGAGAGCCGGGCAAGACGCTGGAAGCCGGTATGGATAAGCATCCGAAGATGGTCCCGGAGAATCTGTTTCCGAGCCTCAATGCGAGGTAAGGGAATGGCGTTAAGCTGGCGTTAACGGCTCTGCCGCCCCTAGAATGGCGGCACACGAAGCTGCTGTGCTGTGGTTGTTCATTAAAGCGCAGCGGGAATTTGGGTGGTACCGCGTGAGTGAACTTGAACTCTCGTCCCATGTTG
>Pjdr2_3139(metS) Score=95.5 Pos=-314 [Paenibacillus sp. JDR-2]
TAATGGCAACGAAGAGAAGAGTACCATCGTGATGTCTTGTACAGAGAGCCCCGGTTTGCTGAGAAGGGGTAAAGAATAAGGATGGGAACATGGCCTCTGAGCTGCGCACCGAACCCCAAGTGGTTGTAGACTGCGCCGGAACCCGCACCCGTTATCGTGCTAGAGTATAAACGCGGCTGCGTCGTACTTGAAGAGGTTAATGCCGCGAGGCATTAATAAAATTGGGTGGTAACACGTGAGGATAACTCTCGTCCCTTCGGG
# RNA - T-box(Phe)
>Pjdr2_1383(pheS) Score=89.7 Pos=-314 [Paenibacillus sp. JDR-2]
TGAAAGCTTTGATGGAGATAAGTAAGCAGAGCTTCCGTACAGGGAGAAGACGCCATGGATTGCGAGCGTCTTTACGGGATTAGGCTGCCGAAGTTCACTCCGGAGCAGACGCCTGAACCGCTTCTAGCCGCCAATGGCTGAAGGCGCATTAGGGAAGGTCCGGTTCCCGCCGTTAACGGGATTTGAGGGGTTGCTGTTTTTTTATGGGCAATCCAAATTAGGGTGGTACCACGGTCTTTCGTCCCTTGCGG
# RNA - T-box(Pro)
>Pjdr2_2468(proB) Score=79 Pos=-267 [Paenibacillus sp. JDR-2]
ATGTAACGTGATGACGGGACTAGTAAGTGAGATGGCCGTGTCCAGAGAGCAAATTCGTCAGGCTGCAAGATTTGCCTCGGTTCCTTGCTGAATCCAACCCCCGAGCGGCCGGCGAGAGCCGGACAGCGCCTCCTGTTATGAGGCTTGAGATGGACCTGTATGCGCGTATTTGCCATTCGGTCAACAAAGGTGGTACCGCGGAAGCTATAGACTTTCGTCCTTTAT
>Pjdr2_3812(proS) Score=71.3 Pos=-280 [Paenibacillus sp. JDR-2]
TCCAACAGCTTTGATCAAGGTCGAGCGTTAAGCGATTGTTCATTTCAGAGAGGAAGCCCGCGGCTGCAAGGCTTCCATGAACGCTTTAGACTCATCCTGCCTTGTGAGCTGCAAAGGCTGCCGATTCCTAATCGGTCTTTGCCGGGATGAGAATCCCGTTACCCATTAGAGAGCCGGCAGCGTTGCTGCCCCGGCTAACAAAGGGTGGTACCACGAGCACATTCGTCCCTTGC
# RNA - T-box(Ser)
>Pjdr2_6148(serS2) Score=54.5 Pos=-217 [Paenibacillus sp. JDR-2]
TTAGGCCGATGAAGAGAATCCAACTCGGAGGCGTTCTCGTCAAGGGGAATTACCGTTCTCCCTAAGTTAACCGGACCCGCCCGTTACCGCGGAACTAAGTGGATTAAACTTCCTGTTTAATCAATTTGGGTGGCACCGCGAGAATACAAGCGCTCTTCGTCCCAATCGG
# RNA - T-box(Thr)
>Pjdr2_4792(thrS) Score=79.3 Pos=-336 [Paenibacillus sp. JDR-2]
GCAAAAAGCAATGACAAAGCCATGTATTTGCCCCGTAATGTCGGCTCAGAGAGAGGAAACTCGGCTGCAATTTCCTTCATGACATCAGCAAATATACCTCTTTGTAGCTGTGCCGTTGAACGTGGATTACGATGAATAAGCCACTATTAAGCTGCACCGGATGTCTCCGTTATCAGATCAATACAAGGATTGCCCTCATATGTCTGGTTTCAGATGCAAGAGAGCGGTCGAAGTAGGGTGGAACCACGGGTAATCAAGCACTCGTCCCTTTG
>Pjdr2_1002(thrZ) Score=68.8 Pos=-307 [Paenibacillus sp. JDR-2]
CGAAGGCAATGACCAAAGACATGATCTCCTTCCCTAGATCCGCCCAGAGAGAGAAGCCCCGGCTGAAAGCTTCTTCGGTAAAAGATCGGGATTACCGCTTTGCAGCCGTCACCTGGAACCCGCAAACGATTTGCGGTAGTACACGTAACCGACTGATCCCCGTTACCGGATTCCAATGAGCATCATCGCGCCGGTAACGCGCGTGATGGAATTAGGGTGGAACCACGAGCAGAACGCACTCGTCCCTTGCAG
# RNA - T-box(Trp)
>Pjdr2_4883(trpS) Score=89.3 Pos=-339 [Paenibacillus sp. JDR-2]
ACGAAATGCGATGAAGGGAACAAGTAAGCACAGGGGTTAATGCGTAACAGAGAGCTGGCGGACGGTGCAAGCCAGTGCAAGCCTGATTGCTGAATGGATCCTGGAGCCGAAAGCGGAACACAGACTCTTGATGTGCTGTCTATGCTTATCCGGCCGTTCCCCGTTACGGAACAATGAAGGCTTGTTGCTTCGACCTGCCCCGATGAGTATCGGATATAGGCGGGAGGCAATGAGTAAATTAGGGTGGCACCACGGTCCCTCGTCCCTTGC
>Pjdr2_1924(trpS) Score=124.9 Pos=-311 [Paenibacillus sp. JDR-2]
AACTTGCGATGATGAAGAGAGTACGCATAACGAATACTCCAGAGAGCTGATGGATGGTGCGAATCAGTGTAGGGATTATGCCGAAGTGGGCTTCTGAGCATCCAAACCGAAACAAGATTTTGAGTAGGCTTTGGCGAAAGTCTCGTCGTTACAAGAGACGCGTATTCCAGCATCCAGCATGCGTCGATACGTCAAAGCGAGTCCGATTTGCGCGAATCGGGCTAACGAAGGTGGTACCACGGGGTTTCTCGTCCTTTTCCA
# RNA - T-box(Tyr)
>Pjdr2_1515(tyrS) Score=97 Pos=-289 [Paenibacillus sp. JDR-2]
CTTATGCGGCGAAAGAGCGCAGTAGCGGCTTAATCCCTGTTCTAGAAAGCCGGGGGGCGATGGAACCCGGCACACATTAAGTCCCGCGAAATACACTCTGGAGCATCCCGGGTAATGCCGGGCGGTTATGGCGAACGATATCTCGCCTAGAGCGGTATGAAGGTCAGCCTTGCGCAAGGCGGCTTCATGCAATTTGGGTGGTACCACGGTAAACAATCGTCCCTGTGTC
# TF - UxuR: Pjdr2_0332
>Pjdr2_0332(uxuR) Score=4.7 Pos=-53 [Paenibacillus sp. JDR-2]
CAAGAATACAAGTAAAGTAA
# TF - LiaR: Pjdr2_4785, Pjdr2_1107
>Pjdr2_4787(liaIF) Score=4.8 Pos=-115 [Paenibacillus sp. JDR-2]
CTCCGTCTCGAGACCGAT
# TF - YvcP: Pjdr2_4845
>Pjdr2_4843(yvcR) Score=6.2 Pos=-123 [Paenibacillus sp. JDR-2]
TGACAAA--CGTAAGA
# TF - MalR2
>Pjdr2_5200(amyA) Score=6.2 Pos=-50 [Paenibacillus sp. JDR-2]
TTGTGCAATCGTTTGCCCAA
# TF - ScrR: Pjdr2_5212
>Pjdr2_5213(sacH) Score=7.3 Pos=-103 [Paenibacillus sp. JDR-2]
TATGTCATCCGGTTGACATA
>Pjdr2_5212(scrR) Score=7.3 Pos=-122 [Paenibacillus sp. JDR-2]
TATGTCAACCGGATGACATA
# TF - YcxD: Pjdr2_0546
>Pjdr2_0545(ycxC) Score=10.9 Pos=-123 [Paenibacillus sp. JDR-2]
AACTGTATC-(0)-GATACAGTT-(12)-CGTTGTTTG
# TF - ABC3918: Pjdr2_5297
>Pjdr2_5298(ABC3919) Score=7.9 Pos=-59 [Paenibacillus sp. JDR-2]
TATACTGTGTATAAGGATATACACAGTATA
# TF - BC2903: Pjdr2_5967
>Pjdr2_5967(BC2903) Score=6.7 Pos=-58 [Paenibacillus sp. JDR-2]
TATAGTTGATTACATGAGTAACCAACCACT
# TF - YhcF2: Pjdr2_1895
>Pjdr2_1896 Score=6 Pos=-35 [Paenibacillus sp. JDR-2]
TTGTATTAGTCGATTAATACAG
>Pjdr2_1895(yhcF2) Score=5.8 Pos=-38 [Paenibacillus sp. JDR-2]
TTGTATTACTGCCATAATACAG
# TF - BH0651: Pjdr2_3952
>Pjdr2_3954(BH0652) Score=5.9 Pos=-49 [Paenibacillus sp. JDR-2]
GTGATATATTGTGTATACACGACATACACAATTTGATCG
# TF - YdeF: Pjdr2_3196
>Pjdr2_3197(PF01593) Score=8.4 Pos=-109 [Paenibacillus sp. JDR-2]
ATATTGTTT---ATACAATTA
# TF - PdxW
>Pjdr2_1506(pdxO) Score=8.7 Pos=-98 [Paenibacillus sp. JDR-2]
CTGTAC-(18)-CTGTAC-(10)-GGACAG