# TF - ArgR: CBY_0608
>CBY_1679(argG) Score=5.6 Pos=-87 [Clostridium butyricum 5521]
ATGTATAATTATAAAA
>CBY_2294(argT) Score=5.1 Pos=-31 [Clostridium butyricum 5521]
TTGTATATTTATAAAG
>CBY_2294(argT) Score=5.1 Pos=0 [Clostridium butyricum 5521]
ATGAATAATAATTCAA
>CBY_1781(artP) Score=4.7 Pos=-110 [Clostridium butyricum 5521]
TTTAATATTTATTTAT
>CBY_1781(artP) Score=5.4 Pos=-76 [Clostridium butyricum 5521]
TTGAATAATTATAAAA
>CBY_1781(artP) Score=5.2 Pos=-56 [Clostridium butyricum 5521]
ATGTATAATTATACTA
# TF - LexA: CBY_0192
>CBY_0292(recA) Score=5.1 Pos=-34 [Clostridium butyricum 5521]
TAGAACATAAGTTCGA
>CBY_2287(Cbei_0030) Score=4.8 Pos=-33 [Clostridium butyricum 5521]
ATGAACATATGTTTGC
>CBY_0192(lexA) Score=4.4 Pos=-68 [Clostridium butyricum 5521]
CAGAACATAGGTTTGC
>CBY_1843(uvrB) Score=4.6 Pos=-44 [Clostridium butyricum 5521]
ACGAATGTTTGTTCGA
# TF - HrcA: CBY_3533
>CBY_3533(hrcA) Score=7.6 Pos=-44 [Clostridium butyricum 5521]
TTAGCACTCGCTGCTAATGAGTGCTAA
>CBY_3050(groES) Score=7.7 Pos=-84 [Clostridium butyricum 5521]
TTAGCACTCGATGATGATGAGTGCTAA
# RNA - Cobalamin
>CBY_3393(cbiK) Score=110.9 Pos=-357 [Clostridium butyricum 5521]
TAATAAATATGATTATAGGTTTTGGTTAGTATAAGTCTAATTAAATTAAAAGGGAAAGCAGTTAAAGTCTGCTACAGCCCCCGCTACTGTAATGGAGTACTGTCTCAAATAACCACTGGAATTTAATTCTGGGAAGGGTGAGTGTTCAGGTTGATACCAAAGTCAGGAGACCTGCCTATAAAATTTTGACTATTAC
>CBY_1415(cbiM) Score=102.4 Pos=-417 [Clostridium butyricum 5521]
CAAAAATATAATTATAGAAGGTGCCTGTGATTTCTCCGCAGGATAATAGGGAAAAGGGTGAAAATCCCTTACGGTCCCGCCGCTGTATTGGAAGAGTTATATCTTAAAAATATGTCACTGGATTTTCTGGGAAGACAAGATATGATTATGAAACCTAAGTCAGAATACCTGCCTTTTATAAGCGTATGTAT
# RNA - FMN
>CBY_0685(ribD) Score=112.2 Pos=-423 [Clostridium butyricum 5521]
TATTAATCTTCAGGGCAGGGTGTAATTCCCTACTGGCGGTATAGCCCGCGAGCTTATTATTAGCAGATTCGGTTAAATTCCGAGGCCAACAGTATAGTCTGGATAAAAGAAGAGTATT
>CBY_3957(ribU) Score=118.9 Pos=-276 [Clostridium butyricum 5521]
TATATCTTCAGGGCAGGGTGAAAATCCCTACTGGCGGTACAGCCCGCGAGCTATTTTAGCAGATTCGGTGTAATTCCGAAGCCAACAGTATAGTCTGGATGAAAGAAGGTAACCTA
# TF - CzrA: CBY_3037
>CBY_3037(czrA) Score=7.1 Pos=-41 [Clostridium butyricum 5521]
CATATGAACAGATGCTCATATG
# RNA - GEMM_RNA_motif
>CBY_3585(flgB) Score=60.1 Pos=-402 [Clostridium butyricum 5521]
ATAATTGAATACGCAAAGTTAATGAAAGTTAATGACGCAAAGCTATAGGGACTAAGAATTTTATTAAGAATTTATGTCAGCCAGTTGCCGGG
>CBY_0554(cheY) Score=56 Pos=-148 [Clostridium butyricum 5521]
TTCATATTGGGCAAAGCAGTTGAAAAGCTGTGACGCAAAGCTAGAGGGCCTTTCTTATAGAATGGCAGCCAGTTGCATAAAT
# RNA - Glycine
>CBY_0150(glyP) Score=46.5 Pos=-425 [Clostridium butyricum 5521]
GATGAAGATGGTGGGAGAGATATCATTTTATATTATTAATATTAAAATGATACACCGAAGAGGGAAATCTTTCAGGTATTAGGACCGCCATTGGACG
>CBY_0150(glyP) Score=56.8 Pos=-327 [Clostridium butyricum 5521]
GCCTCTGGAGAGACTTATTTAATAAGCACCGAAGGAGCAAGGTTGTATACAATACGTGTACAATTGAAACTCTCAGGTAAAAGGACAGGGG
# RNA - L19_leader
>CBY_0541(rplS) Score=24.5 Pos=-69 [Clostridium butyricum 5521]
GGGCGTTCCTCTGTCTACATGAGAAACTGTGTTAAGAACGTCAAAT
# RNA - L21_leader
>CBY_4003(rplU) Score=20.3 Pos=-80 [Clostridium butyricum 5521]
GCACACGTAAGGTTTTTAGTAAAACAAAGTCAAATCTTTGTACCAAAAGTGGCGAGACCG
# RNA - Lysine
>CBY_2257(lysW) Score=117.5 Pos=-425 [Clostridium butyricum 5521]
CGAAAGAGGTAGAGGCGCAGTATTTAATAGTATTACTACGGAGGAAAGCACTGTGAAGTAGTAAGAAAGGAAATATTGCCGAAGCTTATAACTAATGCTTTAAAGTTATAAGGCTGGGGTTATGCAGAATATGCATAACACTGTCACAAAGATGTGATTTTGTGGTGAGCTATCATTCAT
# RNA - MOCO_RNA_motif
>CBY_3332(moeA) Score=64.5 Pos=-461 [Clostridium butyricum 5521]
AATTAAATAATCTCCGAACAACTGTATCTAAGGAGTAAATCTATGATGCTTTTGTCAAGCAGAATGTATGATGATAGTTTAATATACTACATTTTGTTTCAGGGTTCTATGGGAAACTATATTGCCTTCCGTGTTTGAAAAGGAGGATTATTTAAACTAAAAT
# RNA - PreQ1
>CBY_1903(queT) Score=17.2 Pos=-395 [Clostridium butyricum 5521]
ATTATAGTCAGTTCGAAAGCCTCCTGACTTAAAATAAAACTACGGTTAA
# RNA - Purine
>CBY_3122(add) Score=66.5 Pos=-156 [Clostridium butyricum 5521]
ATTTAAATTAATAAATGAGTTTCGTATAATTCCAATAATATGGTTTGGAAGTCTCTACTAGGAACCTATAATTCCTAATTACGAAGAAAATTTTATGCAAA
>CBY_1905(pbuX) Score=70.6 Pos=-340 [Clostridium butyricum 5521]
CTGAGACGATAACACAAACACTCGTATATTTTCAGGAATATGGCTTGAAAGTTTCTACCTGCTACCGTTATTAGCAGACTATGAGGTGTAATATTGTAAAA
>CBY_3053(guaB) Score=67.9 Pos=-246 [Clostridium butyricum 5521]
ATACGGCACATTAAAAAACTCATATATACCCTGGATATGGCAGGGAGTATCTACCGGAAACCTTAAATTTCTGACTATGAGTGATATTAATATAAGCTG
# RNA - PyrR
>CBY_2289(carA) Score=29 Pos=-225 [Clostridium butyricum 5521]
GATGCACTTTAACTTGGTCCTGTGAGGCCAAAAAGGTAGTATAACTATGATATTTAAATATTCAACGGTGAATTTCATAGCTTATTTTT
>CBY_1339(codB) Score=29.8 Pos=-231 [Clostridium butyricum 5521]
AGTCCTTTAAGTTATGTCCTGTGAGACAAACAAGGTCGTATAACACATAGATGAAACACATTGATATTGTGGAGTATCAAAGATTATATAGATATTAAGGGACTGTTATACTAATTATTAATTAGTAGCAGTTCCTTTATTT
>CBY_2768(pyrB) Score=37 Pos=-158 [Clostridium butyricum 5521]
AATAACCTTTAATTTGATTCAGAGAGATCAATAAGGAAGTTATATAACAATGTAGATGCATTAGGATTATTATGCCTTCCTTTAAATTAGGAAAGGCTTTTTTTAT
>CBY_3673(pyrP) Score=27.1 Pos=-79 [Clostridium butyricum 5521]
AGACATATTTTAATTCTAGTCCAGAGAGGCTAAAAAGGGAGAATATAAAGTTCTTCTTTTAAATTTGAGGAGGTATTGTATGTCA
# RNA - SAM
>CBY_2058(metQ5) Score=90 Pos=-337 [Clostridium butyricum 5521]
CAACTTATCAAGAGTGGTGGAGGGACTGGCCCTATGAAACCCGGCAACCGACATTTAGTTCATTTACTATATGTGACGGTGCTAATTCCTGCAGTTTATTTAAACTGGTAGATGAGAG
>CBY_0038(msd) Score=91.2 Pos=-289 [Clostridium butyricum 5521]
ACTTATCAAGAGTGGTGGAGGGACTGGCCCTGTGAAACCCGGCAACCAATATTTATTAGATGATATGAGGTGCCAAATCCTGCAGTTTTTATGACTGGTAGATAAGGTAA
>CBY_1316(metK) Score=91.1 Pos=-295 [Clostridium butyricum 5521]
TCTTATCAAGAGAGGTGGAGGGATAGGGCCCAGTGAAACCCGGCAACCTGTATATACAAGGTGCCAATTCCTGTAGATGTAATTCTACAAGATAAGAAAA
>CBY_4078(metY) Score=79.6 Pos=-317 [Clostridium butyricum 5521]
TTTTATCAAGAAAGACGGAGGGACTGGCCCTGTGATGTCTGGCAACCTGGAGGATATATCATATATATATTGTTTAAGGTGCTAATTCCTGCAGATTTTATATCTGAGAGATAAGAAGA
# RNA - T-box(Ala)
>CBY_2616(alaS) Score=107.6 Pos=-352 [Clostridium butyricum 5521]
ATATTAAGCGATGAATAGGAAAAGTAGAATTATTAATAGATATTAAGAGAGGAAGTGGCTGGTGAAAACTTCTTGCTATTGTATTTTGAAGCTGCCTAGGAGCTATAACTTACTAAGTGATGTATATTTTATACATAATTAGGGTGGTACCGCGGAATTTTAGCTTTCGTCCCTTGT
>CBY_3896(alaR) Score=115.3 Pos=-418 [Clostridium butyricum 5521]
GTTAAAGATAGTGATAAGAAAGAGTAGTTTTAGATATACTTTTTAGAGAGCTGAAGTTTGGTGTGATTCAGTAAGTATACTTAAATGAAGCAGTCTTTGAATTTCATACTGAGAACTAAGAATAGATATTCTTAATTAGGTTATGACGTGTTCCTTACGTTACAAAGGATAGAATGTTTAGTTGACATTCTTACTGAGTGAATAGCATACGTGCTATTTATTAGGGTGGTACCGCGAAGTAGTTCCTTCGTCCCTTGT
# RNA - T-box(Arg)
>CBY_2749(argS) Score=98.2 Pos=-386 [Clostridium butyricum 5521]
GAAAGATTTGATGATGAGGATAGTACTTTAGTTGAGTCCATAAGCGAGCTGGGAAATGGTGTAAGCCTGGTAGGATAGATTAATAGGAAGAGAACCTTGGAGAAGTCTCCTGAAATGAGTAGGGATGACCGCAGGTGAAAAAATGATCTGCGTTAAAGTTAAAGTGGCATATTTTAATTTAGAATATGCAATTAGAGTGGTACCGCGAATAATTCGTCTCTTGT
# RNA - T-box(Cys)
>CBY_4054(cysK) Score=117.9 Pos=-477 [Clostridium butyricum 5521]
TAAAAACTATGAAAAAGGAAAGTAGCATATTGGAACGTTAACAGAGAGGAAAGGAAGCTGAGAACTTTCTATCAGGAAACTATGTGAAGTGCCCTTTGGAGTTGAAATCTGAATAGTAGTAAGATTCTCCGGGTTCACCCGTTATAGTGATAGGCATGATTAGTGCTCGATTTGAGGTGGGATTATATTAATCCAATTAGAGTGGGACCGCGAAGTAACTTCGTCTCTATAAG
# RNA - T-box(Gly)
>CBY_2185(glyS) Score=80.8 Pos=-216 [Clostridium butyricum 5521]
AAAATGCATGTTGATAAAGAAGAGTAGTTTAAAAATCAATTTTAGAGAGATAATGTGCGGTGGAAATTATCATTGATTTTAAATGAAAGGAACTTTTGAGTGTGAGCAAGAAAGATGGACTTAAGTCAAGAAGGGTGGAACCGCGGAATTATAATTTCGTCCCTTTG
# RNA - T-box(Ile)
>CBY_2265(ileS) Score=78.5 Pos=-386 [Clostridium butyricum 5521]
ATAAAAGACTATGATTAGGAAAAGTATCTTAGAACTTATTTTTAGAGAGTAGCTGTTTGGTGCAAAGCTATAATAAATCTTAGAGAAAATCACCTAGGAGTTTGAGGCTGAAAGGCATATATTATTTATGTTTATTAAGTTATCACGTAAGAGCCTGCGTTAAAGGATAGAGTATGTATGTACTTGAAATTAAGCATTTAGTTTTAGATTGAATGTTCACCTTAGGTGGTTTGCGAATTTTACTTCGTCCTGTAG
>CBY_2932(ilvH) Score=48.8 Pos=-275 [Clostridium butyricum 5521]
GAAATGCTAAGAAGGAGACAGTTATTAAACAGAAAAAAGTTTAAGAGAGTCGATGGTTGGTGTGAATCGATACTTTAGTTTTTTAATTATCACTCCTGAGCTGAATCGGGAAAGAGAATTATATGTTCTTGAGTAAAAGATATCCGGTGTGCATCCGTTATATGCAAGGGTTTGT
# RNA - T-box(Leu)
>CBY_1194(ilvB) Score=56.8 Pos=-461 [Clostridium butyricum 5521]
TTACAAGTATGACAAGGAGAAGTACATAAATTATTTAAGCAAAGAGAGAGAATGGATGGTGTAAATTCTCATGAGATATTTATGGAACTAGCCTTTGACTTTTAAAAGAAATCTTTATAGAGAGTAGACTTAAACGGATACCCACCGTTATAAGGGTATAT
>CBY_1582(leuS) Score=122.7 Pos=-379 [Clostridium butyricum 5521]
ATATTAAGCTATGAGTAGAAGTAGTAACAATTTGTATATCTTTAGAGAGTTATTGGTTGGTGTAAAATAACGTTATATTATTGTGAACTTGTCTATGAGCTTATCTGTTTAGAAGCAGATACGGGATAACCCGTTACAGTATTCAAGTGAGAAGATTTATTTATTAAATCTTCTAATAAGAGTGGTACCACGGAATAACGCTTTCGTCTCTTGA
# RNA - T-box(Met)
>CBY_2255(metS) Score=96 Pos=-440 [Clostridium butyricum 5521]
TTTAAATGCATTGAAAAGAAGAGTAGTAAAATAAACATTCTATAAGAGAGCTGATAATTGCTGAAAGTCAGTGTTTGCGAGTTTTATGAAGATGGTCTTAGAGTATATTTTCTGAGCTGGTAAGATATCAGTTAGGAGAGTACGGAAGCAGCCGTTATACTGCAGGGTGATGATAGTCACCTAGTGAGTTATTTATTGTGAAGTAAATAAGAAATAGAGTGGTAACACGTATAATACGTCTCTATA
# RNA - T-box(Phe)
>CBY_3151(pheS) Score=95.2 Pos=-368 [Clostridium butyricum 5521]
TAAAAATTGTGATTGAGAGAGTAGCTTTTATGAAGTTTTCAGGGAGAAAAGATCATTGGACTGGAAGTCTTTTTAAATGAAGTAATTGTGAAGTTCACTCAGGAGTTCCAGCTGTGAAGTAATAGTAGCATCTGGCGGCATATATATGTCGTTATTAAAATTAAGCTGGGTAGCCTTTTAGGTACCAATCAGGGTGGTAACGCGGATAATTCGTCCCTTTTTT
# RNA - T-box(Pro)
>CBY_2151(proS) Score=87.7 Pos=-394 [Clostridium butyricum 5521]
TTTTAGAGCAATGATGGAGAATAGTAGAAGTCGCCCTTTAAGAGAAAAAGTCCTTAGGCTGTAAGACTTTTAATAGACTTTGAACCAGCTTCGGAGCAGTAGGAAAAAACTATCGGTTTAATACCGTTATCATTATTTAGAGAACAAATTTAGGTGGTACCGCGAGTTGATTCGCCCTAATA
# RNA - T-box(Ser)
>CBY_1480(serS) Score=80.5 Pos=-293 [Clostridium butyricum 5521]
AATAGGCGTTATTATAAAAGCTACGATTTATTAATATCTTCAGAGAGCTGGTGTATGGTGCGAACCAGTGATTATTATAAGTCTTTCCACTTTTAGAGCTGCTGATGATAAATCAGAAGGTTTATGCCCTTTATAGCATAGTTTAAGAGGTTAATGTAAGTTTTTATATTGACAATTTAGGTGGCAACGCGGATTCTATTCGTCCTATTATG
# RNA - T-box(Thr)
>CBY_1429(thrZ) Score=99.1 Pos=-314 [Clostridium butyricum 5521]
TATAGGCAATGAAAGGGAAAAGTATTATAGACTACAATTTTCAGAGAGAGAATATCAACCGGCTGAAAGTATTCTTAAATATGACTGTAAGAAAAACTACCCTGGAGCTATGGTTTATTAGCTTATAGATTTATAAGTGAAATGTCATCGGTGAAAATCGTTAATATTATTAAGATGAATTGAATTTTTAATTCAATTTGGGTGGAACCACGGATATATGCATTCGTCCCAAGCTT
>CBY_3005(thrS) Score=57 Pos=-376 [Clostridium butyricum 5521]
AGATAACACGTTGATGAGGACAGTAAGCTAAAATCTTATTTTTCAGAGAGAGAATACACTGGTGTGAGTATTCTTAAATAACTTTAGACTGAAAACCACCTCTGAGTGGTCCTAATAAGACCCGTTATTATCACGTTACGATAATTTCAAGTGACCTAT
# RNA - T-box(Trp)
>CBY_1065(trpE) Score=22.7 Pos=-130 [Clostridium butyricum 5521]
AAATTTGGGTGGCACCACGAGTCACTTCGTCCCA
>CBY_3915(trpS) Score=76.5 Pos=-350 [Clostridium butyricum 5521]
AATAAATCCAATGAAAAGGAAGAGTAGTTAAGTTAAGGTTCAATAAAGAGAACTAGGGATGGTGTAATCCTAGTAAGAAGGACTTAATGAATGGGCCTTGGAGGAATTAAGGGAAATCTGTTAGAAATTATTTTAACAGAAAGTATCTGATATGGTAGCTGCACCTTACAGCAGAAGCATTAATAGTATTATAATCTATAGATGTGAAATTTATATTGTAATTTTGTGCTGTATTTTATGCACATTTTAGGTGGTACAACGGATATATCTCCGTCCTATTT
>CBY_3675(trpP) Score=92.3 Pos=-456 [Clostridium butyricum 5521]
ATTAAATTCCAGGAAGAGGAAGAGTAGTCAGGATGCAATGTCAAAGAGAGCTGGAGATGGTGAGATTTCAGCACAGTAGCTAATGGTGAATGGGCCTCTGAGAAGCAAGATGAAATCTATTTAAATTTGGAGAGTAGTTGCGCCGTGTGTCGCACGTTATAGCGAATAGAGTATGTTAGTACTTGAAGTTGAGTGGTATTTTTGTTAAAGAAGATACAATTTAGGTGGCAACGCGGATATAATCCGTCCTATTT
# RNA - T-box(Val)
>CBY_0347(valS) Score=107.3 Pos=-443 [Clostridium butyricum 5521]
TAAAAGCAATGATAAAGAGGAGTAGAAATTTATAAGCATTATAAGAGAGAGGGAAGAGCTGAAAACCCTTATGTGGAGAATTTTGAAGGTAGCTTTTGAGCTTCTTTAGTGAATGTAAGTAGCTAAAGACGGTTATCTAAATCGTTATTTGAATTAAGAGTCCATTAGAACATATTTATTTTATATGTTTACGTGGAAATAAAGGTGGTAACGCGAGTCTTCGTCCTTTTTAG
# RNA - glmS
>CBY_2954(glmS) Score=96.9 Pos=-431 [Clostridium butyricum 5521]
AAATTTTTAAAGCGCCAGAACTTAAGTAAATTACTTTAGTTGATTGAATGTGGATGTTTAGAGTTTTTTTAAAAGGAAACTCGACTCACATACGTTCGCTGAGTAAGTTCCACTAACCAAATCATAGATTTGGATGCTCACTTAAGTTGACGAGGTTGGGGAGTTATCGAAACTTCGGCGGGTGCCCCACGGTATAGCACTACCGTTAACAGCTGGCAAAACTTTAAAGTGATTTAAAGTACAAATCCAGTTTGGTGTTAAAGCC
# RNA - TPP
>CBY_0451(thiT) Score=70.2 Pos=-186 [Clostridium butyricum 5521]
AAGTGTGCTAGGGGTGCCTTTGGCTGAGAGGTGATTTTATCACTAACCCTCAACACCTGATCTGGTTAGAACCAGCGTAGGGAAGTGTTTTGAATATTAATC
>CBY_0917(tenA) Score=76.1 Pos=-248 [Clostridium butyricum 5521]
CAAAAATAACTAGGGGTGCTGAAAAAGCTGAGAGAGTAAAATTTACTTAACCCTTTGAACCTGTCTTGGGTAATTCCAACGTAGGGAAGTGAGCTTGTAAGTAT
>CBY_1699(thiW) Score=67.6 Pos=-200 [Clostridium butyricum 5521]
TAGATAACTAGGGGAGCTTTTGCTGAGATTGGAATAAATTCCTAAACCCTTATGACCTGATTTGGTTAAGACCAACGTAGGGAAGTGCAGAATTAATTAGTT
# TF - Zur: CBY_0017
>CBY_3339(rpsD2) Score=5.6 Pos=-101 [Clostridium butyricum 5521]
AAAATGATAATGAATTTCATTTA
>CBY_3339(rpsD2) Score=5.1 Pos=-95 [Clostridium butyricum 5521]
ATAATGAATTTCATTTACATTTA
>CBY_3660(znuC) Score=6 Pos=-128 [Clostridium butyricum 5521]
ATATTGCAAATCATTTGCAGATA
>CBY_3975(znuA) Score=5.9 Pos=-33 [Clostridium butyricum 5521]
CAAATGCAAATCATATGCAAAAT
>CBY_1468(feoA) Score=6.4 Pos=-88 [Clostridium butyricum 5521]
ATATTGAAAATTATTTGCATTTA
# TF - NiaR: CBY_1477
>CBY_3922(nadA) Score=6.3 Pos=-46 [Clostridium butyricum 5521]
AAAAGGTGTATATACACCTGTA
>CBY_0041(niaX) Score=6.8 Pos=-144 [Clostridium butyricum 5521]
TACTAATGTATATACACTAGTA
# RNA - ykkC-yxkD
>CBY_1736(COG731) Score=81.1 Pos=-165 [Clostridium butyricum 5521]
AAGATAAGTTTTCTAGGGTTCCGCAGTTTATAGCTGGTCAGGTCCAAGAGAAAACGCACAGTAAAATGTGTTCACGGAAGGATAAAAGCCTGGGAGAT
# RNA - ykoK
>CBY_0446 Score=121.7 Pos=-422 [Clostridium butyricum 5521]
AAAATAAATTTGTTAGGTGAGGCTCCTATAAAGATATATGCCGCTACCCAGAAAAATCGAGAGATTCCAACGGGTTAACAGAAATTATCGCAAAGGTAATTTTTAATGTGGCTGACTAGAAAGTCAAAGCTCTATAGTGCTAAAGCTCTACAACTAAGTAATTAT
# RNA - yybP-ykoY
>CBY_2688(atcL) Score=46.4 Pos=-207 [Clostridium butyricum 5521]
AAACATGTTCCTGGGGGAGTAGTTTGCATATATAATATGTGATTAGGTCAACAATCATGATACGTCATTAGAATGTATCTGGTCTAATCTTAAAAAGCGAGACTCATGTACAGCAT
>CBY_1177(atcL) Score=39 Pos=-203 [Clostridium butyricum 5521]
TGGATTTGTTAAAGGGGAGTAGTCAAAAATATAGCATCAACAGCCGCGGCTTGTTTAGCCTGGTGTTATATACCTAAATGGTGATGAGACTTTTAATATAACT
# TF - CcpA: CBY_2264
>CBY_0413(lrgA) Score=4.6 Pos=-80 [Clostridium butyricum 5521]
ATAAAAAAGTTTTAAA
>CBY_2380 Score=4.1 Pos=-72 [Clostridium butyricum 5521]
TTTAAAAAGTATTTTT
>CBY_3808(ulaE) Score=4 Pos=-66 [Clostridium butyricum 5521]
TATAAAAAGTTATTTA
>CBY_2380 Score=4.2 Pos=-42 [Clostridium butyricum 5521]
TATAAAACTTTTTAAA
>CBY_2431(xylR) Score=4 Pos=-95 [Clostridium butyricum 5521]
AATAAAAATATATAAT
>CBY_2342(xylB) Score=4.6 Pos=-34 [Clostridium butyricum 5521]
TTGTAAATGTTTAATA
>CBY_2342(xylB) Score=4.5 Pos=-57 [Clostridium butyricum 5521]
TTAAAAATGTTTTTAT
>CBY_2342(xylB) Score=3.9 Pos=-77 [Clostridium butyricum 5521]
TTTAAAAAGAATTTTA
>CBY_2438(tkt) Score=3.9 Pos=-42 [Clostridium butyricum 5521]
TGGAAAACATTTGAAT
>CBY_2438(tkt) Score=3.9 Pos=-59 [Clostridium butyricum 5521]
ATGATTAAGATTTTAA
>CBY_2438(tkt) Score=4.1 Pos=-76 [Clostridium butyricum 5521]
ATGAATAAATTTACAA
>CBY_0242 Score=4.4 Pos=-54 [Clostridium butyricum 5521]
ATGTAAATAATTACAA
>CBY_3715(pelL2) Score=4.4 Pos=-115 [Clostridium butyricum 5521]
AAGAAAATATTTACAA
>CBY_3715(pelL2) Score=4.2 Pos=-41 [Clostridium butyricum 5521]
TTGTTAACGATAACAA
>CBY_0566(sspA) Score=4.6 Pos=-116 [Clostridium butyricum 5521]
AAGAAAATGATTTTAT
>CBY_1889(nifJ2) Score=4.1 Pos=-228 [Clostridium butyricum 5521]
TTTATAAAAATTTAAT
>CBY_2984(lacR) Score=4.2 Pos=-77 [Clostridium butyricum 5521]
ATATTAACGTTTTTAT
>CBY_2985(CBY_2985) Score=3.9 Pos=-73 [Clostridium butyricum 5521]
AAGTAAAAAAATTAAT
>CBY_0511 Score=4 Pos=-98 [Clostridium butyricum 5521]
TTTAAAATGTAAAAAT
>CBY_0240 Score=3.9 Pos=-52 [Clostridium butyricum 5521]
AAATAAATAATTTTAT
>CBY_3256(glcA) Score=4.1 Pos=-223 [Clostridium butyricum 5521]
TTGAAAAAATTTTAGT
>CBY_3256(glcA) Score=4.1 Pos=-130 [Clostridium butyricum 5521]
AAGAAATAAATTTAAT
>CBY_1726(galK) Score=4.3 Pos=55 [Clostridium butyricum 5521]
CTGAAAATGTTTTCTT
>CBY_3642(nifJ2) Score=4.4 Pos=-186 [Clostridium butyricum 5521]
AATTAAATGTTTAAAT
>CBY_0233(nifJ2) Score=4.3 Pos=-166 [Clostridium butyricum 5521]
TTGTAAACAATAAAAA
>CBY_3688(kdpA) Score=4.3 Pos=-250 [Clostridium butyricum 5521]
ATGTAAATGTTTTAAG
>CBY_1459(ptnA) Score=4.2 Pos=-370 [Clostridium butyricum 5521]
ATGAAAATAAATTAAA
>CBY_2409(xylS) Score=4.2 Pos=-114 [Clostridium butyricum 5521]
ATATAAAATTTTTAAA
>CBY_2409(xylS) Score=4 Pos=-48 [Clostridium butyricum 5521]
AATAAAAAATTATTAT
>CBY_4099(licT) Score=4.2 Pos=-170 [Clostridium butyricum 5521]
ATGTAAAAAATAATAT
>CBY_4099(licT) Score=4.1 Pos=-147 [Clostridium butyricum 5521]
TTGACAACGTTTTCTA
>CBY_1093(bglP) Score=4.3 Pos=-42 [Clostridium butyricum 5521]
ATAAAAATAATTAAAT
>CBY_0247(uxaB) Score=4.2 Pos=-150 [Clostridium butyricum 5521]
TTGAAAATATTAATTA
>CBY_0247(uxaB) Score=4.1 Pos=-40 [Clostridium butyricum 5521]
ATTTAAATTATTATAT
>CBY_3691(dhaK) Score=4.2 Pos=-96 [Clostridium butyricum 5521]
ATGAAATAGTTATATA
>CBY_0508(gldA) Score=4.5 Pos=-61 [Clostridium butyricum 5521]
TTGTAAACGATATTAT
>CBY_2354 Score=4.1 Pos=-77 [Clostridium butyricum 5521]
TTGAAATAAATTTATA
>CBY_1564(fucI) Score=4.7 Pos=-73 [Clostridium butyricum 5521]
AAGAAAACGTTTAAAA
>CBY_2072 Score=4.6 Pos=-157 [Clostridium butyricum 5521]
AAGAAAACGTTTAATA
>CBY_1661(manA) Score=4 Pos=-77 [Clostridium butyricum 5521]
ATGTAAATGAATTTTA
>CBY_2353(pelX) Score=4.8 Pos=-164 [Clostridium butyricum 5521]
ATGAAAACGATTATAA
>CBY_2353(pelX) Score=4.1 Pos=-32 [Clostridium butyricum 5521]
TTGTTAACGTTAACTA
>CBY_1562(fucO) Score=4.1 Pos=-66 [Clostridium butyricum 5521]
TTGATAAAAATATAAT
>CBY_0041(niaX) Score=4.8 Pos=-215 [Clostridium butyricum 5521]
ATGTAAATGTTTTAAA
>CBY_2074 Score=4.5 Pos=-104 [Clostridium butyricum 5521]
AAGAAAACATTTACAA
>CBY_0874 Score=4.4 Pos=-228 [Clostridium butyricum 5521]
AATAAAAAGATTAAAA
>CBY_0862(CBY_0862) Score=4.7 Pos=-104 [Clostridium butyricum 5521]
ATGAAAATGATTACTT
>CBY_1554(galU) Score=4.1 Pos=-147 [Clostridium butyricum 5521]
TAATAAATGATTAAAT
>CBY_1554(galU) Score=4.7 Pos=-99 [Clostridium butyricum 5521]
ATTAAAACGTTTAAAA
>CBY_1710(mglB) Score=4.7 Pos=-43 [Clostridium butyricum 5521]
ATGTAAACGATTTTAA
>CBY_2940(malH) Score=4.6 Pos=-226 [Clostridium butyricum 5521]
TTGTAAAAGTTTACTT
>CBY_1888(cheY) Score=4.6 Pos=-220 [Clostridium butyricum 5521]
AAGTAAAAGTTTTCAT
>CBY_1888(cheY) Score=4.6 Pos=-195 [Clostridium butyricum 5521]
TTGAAAATATTTTTAT
>CBY_1888(cheY) Score=4.2 Pos=-84 [Clostridium butyricum 5521]
ATGATAATAATTTATA
>CBY_1978(pflD) Score=4.6 Pos=-101 [Clostridium butyricum 5521]
TTGTAAACGTTTATTT
>CBY_3247(ltaE) Score=4.6 Pos=-222 [Clostridium butyricum 5521]
AAGAAAATGTTTACAA
>CBY_3649 Score=4.1 Pos=-232 [Clostridium butyricum 5521]
TTTTAAATATTTATTT
>CBY_3649 Score=4.1 Pos=-64 [Clostridium butyricum 5521]
ATGAAAACAAATATTT
>CBY_1729(agaN) Score=4.6 Pos=-58 [Clostridium butyricum 5521]
TTGAAAACAATTTCAA
>CBY_3009(ispF) Score=4.3 Pos=-90 [Clostridium butyricum 5521]
ATGTAAATGTTTACCT
>CBY_2696 Score=4.6 Pos=-153 [Clostridium butyricum 5521]
ATGAAAAAAATTAAAA
>CBY_2799 Score=4.6 Pos=-93 [Clostridium butyricum 5521]
ATGAAAAAGTTAAATA
>CBY_0846(bglA) Score=4.6 Pos=-153 [Clostridium butyricum 5521]
ATGTAAACAATTAAAT
>CBY_0558(ytxC) Score=4.2 Pos=-241 [Clostridium butyricum 5521]
TTATAAATATTTTAAA
>CBY_0558(ytxC) Score=4.2 Pos=-95 [Clostridium butyricum 5521]
ATAAAAAAATTAAAAT
>CBY_4133(galM) Score=4.1 Pos=-118 [Clostridium butyricum 5521]
TTAAAAAGGTTTTCAA
>CBY_4133(galM) Score=4.5 Pos=-32 [Clostridium butyricum 5521]
ATGAAAACTATTACAA
>CBY_0850(bglC) Score=4.5 Pos=-34 [Clostridium butyricum 5521]
ATGAAATCGATTTAAA
>CBY_4067(cggR) Score=4.1 Pos=-122 [Clostridium butyricum 5521]
TTTTAAATAATTAAAA
>CBY_1741 Score=4.5 Pos=-77 [Clostridium butyricum 5521]
ATGATAATGTTTATAT
>CBY_1585(aroF) Score=4.1 Pos=-92 [Clostridium butyricum 5521]
CTTTAAAAGTTTAAAT
>CBY_0842(nanE) Score=4.1 Pos=-162 [Clostridium butyricum 5521]
AAGAAAAAAATAACTT
>CBY_0842(nanE) Score=4.6 Pos=-66 [Clostridium butyricum 5521]
TTGAAAATATTTTCAA
# TF - Rex: CBY_3040
>CBY_3016(etfB) Score=5.3 Pos=-198 [Clostridium butyricum 5521]
CTGTTAAAAAAATAACAA
>CBY_3325(narA) Score=5.2 Pos=-169 [Clostridium butyricum 5521]
TTATTAATTTTTTAACAA
>CBY_3325(narA) Score=5.1 Pos=-148 [Clostridium butyricum 5521]
TTGTTAAAAAAAGAACAA
>CBY_3041(crt) Score=5.6 Pos=-98 [Clostridium butyricum 5521]
TTGTTATAATATTAACAA
>CBY_2919(ptb) Score=5.4 Pos=-55 [Clostridium butyricum 5521]
TTGATATAATTTTAACAA
>CBY_1290(thlA) Score=5.4 Pos=-81 [Clostridium butyricum 5521]
ATGTTAATAATTTAACGA
>CBY_1290(thlA) Score=5.3 Pos=-140 [Clostridium butyricum 5521]
TTGTCTAAAATTTAACAA
>CBY_3751(bdh) Score=5 Pos=-122 [Clostridium butyricum 5521]
ATGATAAAAATATTACAA
>CBY_3747(bdh) Score=5.4 Pos=-92 [Clostridium butyricum 5521]
TTGACAAAAAAATAACAA
>CBY_3643(fld) Score=5.5 Pos=-37 [Clostridium butyricum 5521]
AAGTTAATTATTTAACAA
>CBY_3753(adhE) Score=5.5 Pos=-104 [Clostridium butyricum 5521]
GTGTTAAAAAAATAACAA
>CBY_3753(adhE) Score=5 Pos=-146 [Clostridium butyricum 5521]
TTGACAAAAAATAAACAA
>CBY_2357(maeB) Score=5.4 Pos=-145 [Clostridium butyricum 5521]
TTGTTAAAAAAGTAACAA
>CBY_2472(butA) Score=5.3 Pos=-41 [Clostridium butyricum 5521]
ATGTGAATTAATTAACAA
# TF - AgaR: CBY_3028, CBY_3476
>CBY_3473(CBY_3473) Score=4.7 Pos=-19 [Clostridium butyricum 5521]
AAATTGGTTAATACCAAAAA
>CBY_3472(agaA) Score=4.7 Pos=-285 [Clostridium butyricum 5521]
TTTTTGGTATTAACCAATTT
>CBY_3028(agaR) Score=5.8 Pos=-201 [Clostridium butyricum 5521]
TATTTGGTAATTACCACTTA
>CBY_3029(agaA2) Score=6 Pos=-51 [Clostridium butyricum 5521]
TAAGTGGTAATTACCAGTTG
>CBY_3029(agaA2) Score=5.8 Pos=-267 [Clostridium butyricum 5521]
TAAGTGGTAATTACCAAATA
# TF - YhcF: CBY_3923
>CBY_3923(yhcF) Score=5.1 Pos=-57 [Clostridium butyricum 5521]
TTGTATTATAGACTTAGTACAA
# TF - MalR1: CBY_3499
>CBY_3499(malR1) Score=6.3 Pos=-50 [Clostridium butyricum 5521]
GAACGGTACCGTTACCGAAT
# TF - MalR2: CBY_2944
>CBY_2945(malL) Score=6.3 Pos=-233 [Clostridium butyricum 5521]
TAGTGCAAGCGATTGCAAAA
>CBY_2940(malE) Score=6.5 Pos=-108 [Clostridium butyricum 5521]
TTTTGCAAGCGATTGCATAT
>CBY_2943(malM) Score=6.3 Pos=-55 [Clostridium butyricum 5521]
TTATGCAAGCGATTGCTTAG
# TF - RbsR: CBY_2437
>CBY_2443(rbsD) Score=4.6 Pos=-120 [Clostridium butyricum 5521]
TAATAGAAGCAGTTAAATTT
# TF - YtrA: CBY_1392
>CBY_1391(Cbei_1884) Score=6.7 Pos=-48 [Clostridium butyricum 5521]
AGGTGTACTAGTTCAAATAGTACACCT
# TF - ExuR: CBY_3741
>CBY_3715 Score=6 Pos=-43 [Clostridium butyricum 5521]
AATTGTTAACGATAACAATA
>CBY_2353(pelX) Score=5.9 Pos=-34 [Clostridium butyricum 5521]
AATTGTTAACGTTAACTATA
>CBY_2353(pelX) Score=5.3 Pos=-122 [Clostridium butyricum 5521]
AATTGTTAACGTTAAACTTA
>CBY_0243(rhiN) Score=4.5 Pos=-197 [Clostridium butyricum 5521]
TTTGGAAAACGTGTTCAATT
>CBY_0243(rhiN) Score=5 Pos=-96 [Clostridium butyricum 5521]
AAATGTGCACGTGTGCAAAA
# TF - NrdR: CBY_2597
>CBY_2237(nrdD) Score=5.5 Pos=-32 [Clostridium butyricum 5521]
ATACAATATATTGTGC
>CBY_2237(nrdD) Score=4.8 Pos=0 [Clostridium butyricum 5521]
ATGCTATATGTTGTGA
>CBY_2909(nrdA) Score=5.2 Pos=-70 [Clostridium butyricum 5521]
ATACGATATGTTGTAT
>CBY_2909(nrdA) Score=5.1 Pos=-28 [Clostridium butyricum 5521]
ACACAAGATATAGTGG
# TF - BirA: CBY_2753
>CBY_3768(bioY1) Score=9 Pos=-73 [Clostridium butyricum 5521]
TTGTTAAC---------------GTTGACAA
>CBY_0442(CAC3455) Score=8.3 Pos=-142 [Clostridium butyricum 5521]
TTGTTTAC---------------GTTGACAA
>CBY_1671(bioY2) Score=9 Pos=-106 [Clostridium butyricum 5521]
TTGTTAAC---------------GTTGACAA
# TF - IscR: CBY_2622
>CBY_2622(iscR) Score=5.3 Pos=-61 [Clostridium butyricum 5521]
CAATAGCCGAGTATTTTGATAAGATATAA
# TF - CBY_0654: CBY_0654
>CBY_0654(CBY_0654) Score=7.8 Pos=-39 [Clostridium butyricum 5521]
AAATTGTAT---AAACAATAT
>CBY_0653(CBY_0653) Score=7.8 Pos=-92 [Clostridium butyricum 5521]
ATATTGTTT---ATACAATTT
# TF - XylR: CBY_2343
>CBY_2344(tal) Score=6.4 Pos=-70 [Clostridium butyricum 5521]
ACTTATTAAATATATTTTTAAAAGA
>CBY_2342(xylB) Score=5.6 Pos=-80 [Clostridium butyricum 5521]
ACATTTAAAAAGAATTTTAATAATT
>CBY_2380(CAC2611) Score=7.1 Pos=-87 [Clostridium butyricum 5521]
ACTTATTAAAATACATTTAAAAAGT
>CBY_2342(xylB) Score=7.1 Pos=-92 [Clostridium butyricum 5521]
ACTTATTAAAATACATTTAAAAAGA
# TF - SdaR: CBY_1135
>CBY_1134(grtP) Score=6.4 Pos=-120 [Clostridium butyricum 5521]
AATTGTTCAAATGCACAAAA
# TF - HcpR: CBY_3934
>CBY_3927 Score=6.2 Pos=-98 [Clostridium butyricum 5521]
CTGTAACTTATGTTACAG
# TF - CymR: CBY_1066
>CBY_1162(mccB) Score=5.5 Pos=-100 [Clostridium butyricum 5521]
TAATTCCAAGTAAACAAATAGTAATAG
>CBY_3239(cysT) Score=5.6 Pos=-81 [Clostridium butyricum 5521]
TAATTCATAGTAATTCTATAAGAATAA