# TF - HexR: Lcho_3388
>Lcho_3387(zwf) Score=5.6 Pos=-47 [Leptothrix cholodnii SP-6]
CTGAAACTCAGTTACAG
>Lcho_2919(edd) Score=4.4 Pos=-94 [Leptothrix cholodnii SP-6]
ATGTAACTTAGTTTCGG
>Lcho_3386(tal) Score=4.6 Pos=-221 [Leptothrix cholodnii SP-6]
CTGTAACTGAGTTTCAG
# TF - NrdR: Lcho_2928
>Lcho_0382(nrdA) Score=5.2 Pos=-322 [Leptothrix cholodnii SP-6]
ACACTAGCGCTAGTGC
>Lcho_0382(nrdA) Score=5.4 Pos=-291 [Leptothrix cholodnii SP-6]
GCACTAGATGTAGTGC
# TF - IscR: Lcho_1048
>Lcho_1048(iscR) Score=6.1 Pos=-109 [Leptothrix cholodnii SP-6]
ATAATCGAGTAAAACACTCGGGAAA
# TF - NtrC: Lcho_3584
>Lcho_3581(glnA) Score=5.1 Pos=-178 [Leptothrix cholodnii SP-6]
CGCACCATGTTTGTGCA
>Lcho_3581(glnA) Score=4.6 Pos=-225 [Leptothrix cholodnii SP-6]
GGCCCCGAAATGGTGCG
>Lcho_3942(glnK) Score=5.3 Pos=-193 [Leptothrix cholodnii SP-6]
TGCACTGAATTGGTGCC
>Lcho_3843(nrtA) Score=4.4 Pos=-300 [Leptothrix cholodnii SP-6]
TGCACGCCCATGGTGCG
# TF - LexA: Lcho_2082
>Lcho_2082(lexA) Score=5.4 Pos=-110 [Leptothrix cholodnii SP-6]
GACTGGATAAAATTACAGTG
>Lcho_2079(PF04055) Score=5.1 Pos=-39 [Leptothrix cholodnii SP-6]
AACTGTATGCGCATACAGTT
>Lcho_0497(recA) Score=4.8 Pos=-56 [Leptothrix cholodnii SP-6]
CACTGTACAAACATCCAGCA
>Lcho_2901(imuA) Score=5.6 Pos=-32 [Leptothrix cholodnii SP-6]
GACTGTATGAACATACAGTC
# TF - LiuR: Lcho_4201
>Lcho_4202(paaI) Score=5.2 Pos=-30 [Leptothrix cholodnii SP-6]
GTTAACGTAAACGTCAAT
>Lcho_4202(paaI) Score=6.6 Pos=-36 [Leptothrix cholodnii SP-6]
ATTGACGTTAACGTAAAC
>Lcho_4201(liuR) Score=5.7 Pos=-73 [Leptothrix cholodnii SP-6]
ACTTACGTTTACGTCAAC
>Lcho_2559(paaH) Score=5.5 Pos=-93 [Leptothrix cholodnii SP-6]
GTTTACGTCAACGTCAAC
>Lcho_2559(paaH) Score=6.4 Pos=-99 [Leptothrix cholodnii SP-6]
ATTGACGTTTACGTCAAC
>Lcho_3844(mcm) Score=5.3 Pos=-72 [Leptothrix cholodnii SP-6]
GTTTACGTAAACGTCAAT
>Lcho_3844(mcm) Score=5.7 Pos=-78 [Leptothrix cholodnii SP-6]
TATGACGTTTACGTAAAC
# TF - FadP: Lcho_4033
>Lcho_2540(etfB) Score=5.3 Pos=-99 [Leptothrix cholodnii SP-6]
TAGTACGATCGTGCTT
>Lcho_4033(fadP) Score=5.7 Pos=-30 [Leptothrix cholodnii SP-6]
TAGCACGATCGTTCGA
>Lcho_2069(etfD) Score=5.1 Pos=-108 [Leptothrix cholodnii SP-6]
AAGCACGGTCGTGCTA
# TF - LiuQ: Lcho_2120
>Lcho_2120(liuQ) Score=5 Pos=-131 [Leptothrix cholodnii SP-6]
ATGAGCTTTACTCAA
>Lcho_2120(liuQ) Score=5.5 Pos=-18 [Leptothrix cholodnii SP-6]
TTGAGTGATACTCAA
>Lcho_2119(liuA) Score=5.5 Pos=-175 [Leptothrix cholodnii SP-6]
TTGAGTATCACTCAA
>Lcho_2119(liuA) Score=5 Pos=-62 [Leptothrix cholodnii SP-6]
TTGAGTAAAGCTCAT
# TF - PaaR: Lcho_2402
>Lcho_2406(paaY2) Score=5.5 Pos=-115 [Leptothrix cholodnii SP-6]
CTTGACCGACCGGTAGGTAAAT
>Lcho_3574(paaA) Score=6.3 Pos=-48 [Leptothrix cholodnii SP-6]
ATTTACCGACCGGACGGTCAAT
>Lcho_2405(paaF) Score=5.8 Pos=-42 [Leptothrix cholodnii SP-6]
ATTTACCTACCGGTCGGTCAAG
# TF - Zur2: Lcho_3564
>Lcho_3564(zur2) Score=5.9 Pos=-111 [Leptothrix cholodnii SP-6]
CGTATCATTTGACGCATGAAGGC
# RNA - TPP
>Lcho_2430(thiC) Score=44.3 Pos=-214 [Leptothrix cholodnii SP-6]
CTCCCGCTCCGGGGTGCACCCGGGCCGTCAGCGAATGTCCGCAGACGGCTCGTGTGCTGAGATGGCGCCTTCTGGCCCGAACCCGCTGAACTTGACCCGGCTCGTACCGGCGTAAGAAGAGCTCGCACCCAAGGCCC
>Lcho_2203(cytX) Score=50.8 Pos=-151 [Leptothrix cholodnii SP-6]
TTCCTTGCTGGGGGTGCTGGCCTTGTGCCGGCTGAGAAAGTCCCTTCGAACCTGACTGAGGTAATCCTCGCGCAGGGAAGCATGGCGCGGAGCCCCG
# TF - HrcA: Lcho_3487
>Lcho_3542(rpoH) Score=6.9 Pos=-59 [Leptothrix cholodnii SP-6]
TTAGCACTCTCGAGGGTCGAGTGCTAA
>Lcho_0482(groS) Score=6.5 Pos=-96 [Leptothrix cholodnii SP-6]
TTAGCACTCGCCGGTGGTGAGTGCTAG
# TF - GntR: Lcho_0328
>Lcho_0327(gntK) Score=6.6 Pos=-128 [Leptothrix cholodnii SP-6]
CTAGGATAGCGCTATCCAAA
>Lcho_0327(gntK) Score=6 Pos=-19 [Leptothrix cholodnii SP-6]
ACGAGATAGCGCTATCCAAA
>Lcho_0328(gntR) Score=6 Pos=-170 [Leptothrix cholodnii SP-6]
TTTGGATAGCGCTATCTCGT
>Lcho_0328(gntR) Score=6.6 Pos=-61 [Leptothrix cholodnii SP-6]
TTTGGATAGCGCTATCCTAG
# RNA - SAH_riboswitch
>Lcho_0119(ahcY) Score=55.5 Pos=-175 [Leptothrix cholodnii SP-6]
CTGTTTCGAGGAGCGTTGCAAGGCCGGTGGCTCCCACCCGCCCCAGGCTCGAAACCCTCACAAGGCAACGGCGCTCACCCGCT
>Lcho_3270(metH) Score=45.1 Pos=-155 [Leptothrix cholodnii SP-6]
TCCCCGAGGAGCGTTGCGACGGCGTGCGATCACGCTGCCAGGCTCGGGGCCACGCCACACATGTGGCGCTGCCAACGACGCTCACCCCCGCC
# TF - Daci_3836: Lcho_3020
>Lcho_3031(uahA) Score=4.7 Pos=13 [Leptothrix cholodnii SP-6]
TGTTGTATACCAGT
# TF - ModE3: Lcho_1822
>Lcho_3729(fdoX) Score=5.5 Pos=-39 [Leptothrix cholodnii SP-6]
ATATGCAGGCCTTTGCATGG
>Lcho_1816(Ajs_3943) Score=6.2 Pos=-91 [Leptothrix cholodnii SP-6]
CTATGCAGATGATTGCATAG
# TF - YdcR: Lcho_0726
>Lcho_1322(COG2863) Score=7.1 Pos=-110 [Leptothrix cholodnii SP-6]
CGCTGATCCGATCGA----------ATCTGCACCTGACCG
>Lcho_0727(Daci_5825) Score=8.3 Pos=-69 [Leptothrix cholodnii SP-6]
ATCTGATGCTATCGA----------ATCTGAATCTACCGG
# TF - PdxW2: Lcho_0025
>Lcho_0026(osmC) Score=12.6 Pos=-62 [Leptothrix cholodnii SP-6]
ATTGGCTCT-(15)-AGTGGTTAA-(5)-AGAACCACT
# TF - MdcY: Lcho_0081
>Lcho_0081(mdcY) Score=3.8 Pos=-101 [Leptothrix cholodnii SP-6]
ACGTATACAT
>Lcho_0080(Aave_1513) Score=3.8 Pos=-61 [Leptothrix cholodnii SP-6]
ATGTATACGT
# TF - SdhR: Lcho_2707
>Lcho_2708(mdh) Score=7.5 Pos=-175 [Leptothrix cholodnii SP-6]
ACAGATGTCTTATATAAGACATAAGA
>Lcho_2711(acnB) Score=6.1 Pos=-114 [Leptothrix cholodnii SP-6]
TGGCAAGTCTTATATAAGACATAAAA
>Lcho_1744(aceA) Score=7.1 Pos=-102 [Leptothrix cholodnii SP-6]
ATTTATATCTTATATAAGACATAAGT
>Lcho_2707(sdhR) Score=7.5 Pos=-73 [Leptothrix cholodnii SP-6]
TCTTATGTCTTATATAAGACATCTGT
# TF - GguR: Lcho_1116
>Lcho_2484(garD) Score=4.8 Pos=-210 [Leptothrix cholodnii SP-6]
ACGTCATCGTATAACTT
>Lcho_2484(garD) Score=5.7 Pos=-66 [Leptothrix cholodnii SP-6]
ATGTTGTACGACAACAT
>Lcho_1117(kdgD) Score=5.1 Pos=-65 [Leptothrix cholodnii SP-6]
ATGTTGTACGATGACAT
>Lcho_1117(kdgD) Score=4.4 Pos=-58 [Leptothrix cholodnii SP-6]
ACGATGACATACAACAT
>Lcho_1115(udh) Score=5.4 Pos=-95 [Leptothrix cholodnii SP-6]
ACGTTGTACGACAACTG
>Lcho_1116(gguR) Score=5.4 Pos=-73 [Leptothrix cholodnii SP-6]
CAGTTGTCGTACAACGT
>Lcho_2484(garD) Score=4.1 Pos=-217 [Leptothrix cholodnii SP-6]
TTGTTGTACGTCATCGT