# TF - NsrR: Bphy_0937 7085819 Bphy_0936 PF01152 7085820 Bphy_0937 nsrR 7091133 Bphy_6194 hcp 7091132 Bphy_6193 hcr # TF - HexR: Bphy_2581 7087494 Bphy_2581 hexR 7085496 Bphy_0627 zwf 7085495 Bphy_0626 pgl 7085494 Bphy_0625 glk 7087493 Bphy_2580 edd 7087492 Bphy_2579 eda # TF - NrdR: Bphy_2448 7087552 Bphy_2639 nrdA 7087551 Bphy_2638 nrdB # TF - Zur: Bphy_0488 7085355 Bphy_0488 zur 7085354 Bphy_0487 znuA 7085353 Bphy_0486 znuC 7085352 Bphy_0485 znuB # TF - LldR: Bphy_5379 7090318 Bphy_5379 lldR 7090317 Bphy_5378 lldE 7090316 Bphy_5377 lldG 7090315 Bphy_5376 lldF 7090314 Bphy_5375 lldP # TF - NorR: Bphy_4025 7088960 Bphy_4025 norR 7088961 Bphy_4026 hmp # TF - HutC: Bphy_5105, Bphy_5106, Bphy_1813 7086719 Bphy_1814 hutH 7086718 Bphy_1813 hutC 7086717 Bphy_1812 hutU 7086716 Bphy_1811 hutD 7086715 Bphy_1810 hutI 7086714 Bphy_1809 hutF 7086713 Bphy_1808 hutG 7090039 Bphy_5100 hisJ2 7090040 Bphy_5101 hisQ2 7090041 Bphy_5102 hisM2 7090042 Bphy_5103 hisP2 7090043 Bphy_5104 hutH2 7090044 Bphy_5105 hutC # TF - IscR: Bphy_1459 7086357 Bphy_1459 iscR 7086356 Bphy_1458 iscS 7086355 Bphy_1457 iscU 7086354 Bphy_1456 iscA 7086353 Bphy_1455 hscB 7086352 Bphy_1454 hscA 7086351 Bphy_1453 fdx 7086350 Bphy_1452 yfhJ # TF - NagQ: Bphy_0292 7085157 Bphy_0292 nagQ 7085158 Bphy_0293 nagA 7085159 Bphy_0294 nagB2 7085160 Bphy_0295 ptsI 7085161 Bphy_0296 nagE # TF - GlcC: Bphy_7453, Bphy_5644 7091548 Bphy_6609 glcG 7091549 Bphy_6610 glcB 7092393 Bphy_7454 glcD 7092394 Bphy_7455 glcE 7092395 Bphy_7456 glcF 7090583 Bphy_5643 glcD 7090582 Bphy_5642 glcE 7090581 Bphy_5641 glcF 7092392 Bphy_7453 glcC 7090584 Bphy_5644 glcC # TF - NtrC: Bphy_1479 7086380 Bphy_1481 glnA 7086379 Bphy_1480 ntrB 7086378 Bphy_1479 ntrC 7090598 Bphy_5658 narK 7090599 Bphy_5659 nasD 7090600 Bphy_5660 nasE 7090601 Bphy_5661 nasBA # TF - RbsR: Bphy_1234 7086129 Bphy_1237 rbsB 7086128 Bphy_1236 rbsA 7086127 Bphy_1235 rbsC 7086126 Bphy_1234 rbsR 7086125 Bphy_1233 rbsK # TF - ModE: Bphy_4402 7089340 Bphy_4405 modA 7089339 Bphy_4404 modB 7089338 Bphy_4403 modC # TF - LexA: Bphy_1630 7085642 Bphy_0767 PF04055 7089092 Bphy_4157 PF10616 7089091 Bphy_4156 PF00589 7086448 Bphy_1549 uvrA 7086531 Bphy_1630 lexA 7085307 Bphy_0440 recA 7085308 Bphy_0441 recX 7086877 Bphy_1972 imuA 7086876 Bphy_1971 imuB 7086875 Bphy_1970 dnaE2 7090247 Bphy_5308 PF08774 7090248 Bphy_5309 PF06733 # TF - LiuR: Bphy_0181 7085045 Bphy_0181 liuR 7085044 Bphy_0180 aceK 7085043 Bphy_0179 cah 7085042 Bphy_0178 ivdA 7085041 Bphy_0177 null 7085040 Bphy_0176 ivdC 7085039 Bphy_0175 null 7088492 Bphy_3562 liuA 7088491 Bphy_3561 liuB 7088490 Bphy_3560 liuC 7088489 Bphy_3559 liuD 7087955 Bphy_3025 aacS # TF - PsrA: Bphy_1699 7085705 Bphy_0828 fabH 7085706 Bphy_0829 fabD 7085707 Bphy_0830 fabG 7085708 Bphy_0831 acpP 7085709 Bphy_0832 fabF 7086604 Bphy_1699 psrA 7086605 Bphy_1700 fadE 7086606 Bphy_1701 fabG 7086607 Bphy_1702 null 7086608 Bphy_1703 fadA 7086609 Bphy_1704 fadD # TF - RutR: Bphy_1537 7086435 Bphy_1536 pydC 7086434 Bphy_1535 pydX 7086433 Bphy_1534 pydA 7086432 Bphy_1533 pydP 7086431 Bphy_1532 pydB 7086436 Bphy_1537 rutR # TF - FadP: Bphy_0384 7087599 Bphy_2685 fadD1 7085391 Bphy_0524 fadD2 7086468 Bphy_1567 etfD 7085250 Bphy_0384 fadP 7085251 Bphy_0385 acdH 7085252 Bphy_0386 acdB 7085253 Bphy_0387 acdA 7085254 Bphy_0388 echH 7085021 Bphy_0157 nppD 7085637 Bphy_0762 etfB 7085638 Bphy_0763 etfA 7085639 Bphy_0764 acdH2 7085915 Bphy_1028 fadB 7085916 Bphy_1029 pncA 7085917 Bphy_1030 fadA 7086903 Bphy_1993 null 7086902 Bphy_1992 acdQ 7086901 Bphy_1991 acdP 7086900 Bphy_1990 maoC 7086899 Bphy_1989 echI # TF - LiuQ: Bphy_3563 7088493 Bphy_3563 liuQ 7088492 Bphy_3562 liuA 7088491 Bphy_3561 liuB 7088490 Bphy_3560 liuC 7088489 Bphy_3559 liuD # TF - VanR: Bphy_6983 7091921 Bphy_6982 null 7091920 Bphy_6981 null 7091919 Bphy_6980 null 7091918 Bphy_6979 null # TF - PhnF: Bphy_3772 7088707 Bphy_3772 phnF 7088706 Bphy_3771 rcsF 7088705 Bphy_3770 phnN 7088708 Bphy_3773 phnG 7088709 Bphy_3774 phnH 7088710 Bphy_3775 phnI 7088711 Bphy_3776 phnJ 7088712 Bphy_3777 phnK 7088713 Bphy_3778 phnL 7088714 Bphy_3779 phnM 7089558 Bphy_4623 phnC 7089557 Bphy_4622 phnD 7089556 Bphy_4621 phnE # TF - PaaR: Bphy_2863 7087608 Bphy_2689 paaZ 7087609 Bphy_2690 paaJ 7087610 Bphy_2691 paaF 7087611 Bphy_2692 paaY 7087612 Bphy_2693 paaK 7087607 Bphy_2688 paaG 7087786 Bphy_2857 paaA 7087787 Bphy_2858 paaB 7087788 Bphy_2859 paaC 7087789 Bphy_2860 paaD 7087790 Bphy_2861 paaE 7087791 Bphy_2862 paaW 7087792 Bphy_2863 paaR # RNA - FMN 7085283 Bphy_0417 ribB # RNA - TPP 7087694 Bphy_2774 thiO 7087693 Bphy_2773 thiS 7087692 Bphy_2772 thiG 7087691 Bphy_2771 thiE 7086417 Bphy_1518 thiC # RNA - Cobalamin 7088073 Bphy_3143 cobG 7088074 Bphy_3144 cbiC 7088075 Bphy_3145 cbiL 7088076 Bphy_3146 cbiGH 7088367 Bphy_3437 bglu_2g19320 7088366 Bphy_3436 cbtA 7088083 Bphy_3153 cobW 7088082 Bphy_3152 cobN 7088081 Bphy_3151 chlI 7088080 Bphy_3150 chlD 7087124 Bphy_2213 btuB 7087123 Bphy_2212 btuC 7087122 Bphy_2211 btuD 7087121 Bphy_2210 cobT 7087120 Bphy_2209 cobS 7087119 Bphy_2208 cobC 7088084 Bphy_3154 cysG 7088085 Bphy_3155 cbiG 7088086 Bphy_3156 btuR 7088087 Bphy_3157 cbiA 7088088 Bphy_3158 bluB # RNA - SAH_riboswitch 7087847 Bphy_2918 ahcY 7087846 Bphy_2917 PF04020 7087845 Bphy_2916 metF # RNA - ykkC-yxkD 7088909 Bphy_3974 uctB 7088910 Bphy_3975 uctP 7088911 Bphy_3976 uctA 7088912 Bphy_3977 amt1 7088913 Bphy_3978 amt2 7088914 Bphy_3979 ucaA 7088915 Bphy_3980 ucaB # RNA - Glycine 7087933 Bphy_3003 gcvT 7087934 Bphy_3004 gcvH 7087935 Bphy_3005 gcvP # RNA - yybP-ykoY 7085562 Bphy_0688 COG2119 # RNA - mini-ykkC 7088914 Bphy_3979 ucaA 7088915 Bphy_3980 ucaB 7086963 Bphy_2052 ykkC # RNA - sucA 7086626 Bphy_1721 sucA 7086625 Bphy_1720 sucB 7086624 Bphy_1719 lpdA # TF - YrdX: Bphy_4559 7089495 Bphy_4560 PF02635 7089496 Bphy_4561 COG388 7089497 Bphy_4562 COG2516 7089498 Bphy_4563 COG3153 7089499 Bphy_4564 COG2144 7089500 Bphy_4565 COG438 (RfaG) 7089501 Bphy_4566 Bphy_4566 7089502 Bphy_4567 COG2072 (TrkA) # TF - HrcA: Bphy_2503 7087245 Bphy_2334 groS 7087244 Bphy_2333 groL 7085166 Bphy_0301 rpoH # TF - GntR: Bphy_5547 7090486 Bphy_5547 gntR 7090487 Bphy_5548 gntK 7090488 Bphy_5549 gntP 7090489 Bphy_5550 gntO # TF - NmlR: Bphy_0943 7085826 Bphy_0943 nmlR 7085827 Bphy_0944 pcaC # TF - CueR: Bphy_1967 7086873 Bphy_1968 copZ 7086872 Bphy_1967 cueR # TF - Bphy_4590: Bphy_4590 7089526 Bphy_4591 Bphy_4591 7089527 Bphy_4592 Bphy_4592 7089528 Bphy_4593 COG0329 7089525 Bphy_4590 Bphy_4590 # TF - BglR: Bphy_5439 7090373 Bphy_5434 bglB 7090374 Bphy_5435 bglE 7090375 Bphy_5436 bglF 7090376 Bphy_5437 bglG 7090377 Bphy_5438 bglK 7090378 Bphy_5439 bglR # TF - PtxS: Bphy_1250 7086146 Bphy_1254 kguE 7086145 Bphy_1253 kguK 7086144 Bphy_1252 kguT 7086143 Bphy_1251 kguD 7086142 Bphy_1250 ptxS 7086141 Bphy_1249 kguM 7086140 Bphy_1248 kguX # TF - Bphy_6994: Bphy_6994 7091931 Bphy_6992 Bphy_6992 7091932 Bphy_6993 Bphy_6993 7091933 Bphy_6994 Bphy_6994 7091934 Bphy_6995 PF00389 7091935 Bphy_6996 PF04909 # TF - Bphy_2245: Bphy_2245 7087156 Bphy_2245 Bphy_2245 7087155 Bphy_2244 Bphy_2244 7087154 Bphy_2243 Bphy_2243 7087153 Bphy_2242 Bphy_2242 7087152 Bphy_2241 Bphy_2241 7087151 Bphy_2240 Bphy_2240 # TF - ScrR: Bphy_6046 7090986 Bphy_6046 scrR 7090987 Bphy_6047 sacB 7090988 Bphy_6048 Bamb_3698 7090989 Bphy_6049 scrB # TF - GabR: Bphy_4320, Bphy_4852, Bphy_4619 7089256 Bphy_4321 gbtA 7089257 Bphy_4322 gbtD 7089258 Bphy_4323 gbtB 7089259 Bphy_4324 gbtC 7089553 Bphy_4618 gabT 7089552 Bphy_4617 gabD 7089786 Bphy_4851 gabT 7089785 Bphy_4850 gabD # TF - BPSL1304: Bphy_1500 7086399 Bphy_1500 BPSL1304 7086400 Bphy_1501 RSc1791 7086401 Bphy_1502 RSc1792 7086402 Bphy_1503 RSc1793 7086403 Bphy_1504 RSc1794 7086404 Bphy_1505 RSc1795 # TF - FdsR: Bphy_0730 7085603 Bphy_0729 fdsG 7085602 Bphy_0728 fdsB 7085601 Bphy_0727 fdsA 7085600 Bphy_0726 fdsD 7085604 Bphy_0730 fdsR # TF - PhnR2: Bphy_5069 7090000 Bphy_5065 phnS2 7090001 Bphy_5066 phnT2 7090002 Bphy_5067 phnU2 7090003 Bphy_5068 phnV 7090004 Bphy_5069 phnR2 7090005 Bphy_5070 phnA2 7090006 Bphy_5071 gap 7090007 Bphy_5072 COG4341 7089999 Bphy_5064 null # TF - UraR: Bphy_1303 7086195 Bphy_1303 uraR 7086194 Bphy_1302 pbuT 7086193 Bphy_1301 hyuE 7086192 Bphy_1300 COG0726 7086191 Bphy_1299 uraO 7086190 Bphy_1298 allC 7086189 Bphy_1297 allA # TF - UreR: Bphy_2597 7087510 Bphy_2597 ureR 7087509 Bphy_2596 dctA 7087508 Bphy_2595 allH 7087507 Bphy_2594 ureH # TF - MetR: Bphy_5471 7090409 Bphy_5470 metE 7090410 Bphy_5471 metR # TF - EutR: Bphy_3865 7088800 Bphy_3865 eutR 7088799 Bphy_3864 eutB 7088798 Bphy_3863 eutC 7088797 Bphy_3862 eutD 7088796 Bphy_3861 eutE 7088795 Bphy_3860 doeX 7088794 Bphy_3859 doeC 7088793 Bphy_3858 doeD 7088801 Bphy_3866 ehuB 7088802 Bphy_3867 ehuC 7088803 Bphy_3868 ehuD 7088804 Bphy_3869 ehuA # TF - TauR: Bphy_6226 7091144 Bphy_6205 xsc 7091145 Bphy_6206 pta 7091164 Bphy_6225 tauX 7091163 Bphy_6224 tauY 7091162 Bphy_6223 gabP 7091142 Bphy_6203 tauC 7091141 Bphy_6202 tauA 7091140 Bphy_6201 tauB # TF - PdxW: Bphy_4112 7089016 Bphy_4081 PF00583 7089048 Bphy_4113 PF00583 # TF - BPSL1086: Bphy_2114 7089409 Bphy_4474 PF01810 # TF - PdxQ3: Bphy_5571 7090510 Bphy_5570 PF01965 # TF - Bamb_6386: Bphy_6987, Bphy_3552 7091927 Bphy_6988 COG1917 7091928 Bphy_6989 COG2128 7088481 Bphy_3551 PF01966 7088480 Bphy_3550 COG1028 7091925 Bphy_6986 PF01966 7091924 Bphy_6985 COG1028 7088483 Bphy_3553 COG1917 7088484 Bphy_3554 COG2128 # TF - SdhR: Bphy_4360 7090795 Bphy_5855 acnB 7089295 Bphy_4360 sdhR 7089296 Bphy_4361 sdhC 7089297 Bphy_4362 sdhD 7089298 Bphy_4363 sdhA 7089299 Bphy_4364 sdhB 7089300 Bphy_4365 COG2938 7089301 Bphy_4366 gltA 7085432 Bphy_0565 icd 7089294 Bphy_4359 null 7089293 Bphy_4358 mdh # TF - PdxW2: Bphy_5851 7090790 Bphy_5850 pdxO2 # TF - BPSS1200: Bphy_4510 7088995 Bphy_4060 PF02627 # TF - OapR: Bphy_4469 7089403 Bphy_4468 oapT # TF - BPSS0970: Bphy_4744 7089678 Bphy_4743 fdhA2 # TF - YdcR: Bphy_6904, Bphy_6902, Bphy_3581 7091845 Bphy_6906 null 7091844 Bphy_6905 null 7088510 Bphy_3580 PF11174 7090769 Bphy_5829 cysI 7090768 Bphy_5828 COG3749 7091842 Bphy_6903 COG4943 7091841 Bphy_6902 ydcR2 # TF - Bphy_4252: Bphy_4252 7089187 Bphy_4252 Bphy_4252 7089188 Bphy_4253 sgaA # TF - Bamb_3558: Bphy_3121 7088052 Bphy_3122 null # TF - Bcep1808_4966: Bphy_0548 7085416 Bphy_0549 PF11142 # TF - UxuR2: Bphy_6346, Bphy_5153 7091284 Bphy_6345 mglA 7091283 Bphy_6344 Bamb_1227 7091282 Bphy_6343 Bamb_1226 7091281 Bphy_6342 tas 7091280 Bphy_6341 tdh 7091279 Bphy_6340 uxaB 7090096 Bphy_5157 null 7090097 Bphy_5158 mglA 7090098 Bphy_5159 null 7090099 Bphy_5160 null 7090100 Bphy_5161 COG3386 7090101 Bphy_5162 null 7090093 Bphy_5154 uhpC 7090094 Bphy_5155 uxaA 7090095 Bphy_5156 idi 7090092 Bphy_5153 uxuR3-3 7091285 Bphy_6346 uxuR2 # TF - GguR: Bphy_6525 7091535 Bphy_6596 garP 7091465 Bphy_6526 kgsD 7091464 Bphy_6525 gguR 7091321 Bphy_6382 garD 7091466 Bphy_6527 garL 7091467 Bphy_6528 garR 7091468 Bphy_6529 uxuF 7091469 Bphy_6530 gudD 7091470 Bphy_6531 kdgD # TF - UdhR: Bphy_5674 7090615 Bphy_5675 exuT 7090614 Bphy_5674 udhR 7090613 Bphy_5673 udh