# TF - Rex: Namu_0919
>Namu_0973(COG0644) Score=5.9 Pos=-96 [Nakamurella multipartita DSM 44233]
TCGTGAACGAATTCACAA
>Namu_0919(rex) Score=5.4 Pos=-110 [Nakamurella multipartita DSM 44233]
TTGTGCACGCGTTCACGA
>Namu_1412(whiB) Score=5.9 Pos=-109 [Nakamurella multipartita DSM 44233]
ATGTGAAAGCATTCACAA
# TF - PaaR: Namu_2483
>Namu_2491(paaA) Score=6 Pos=-70 [Nakamurella multipartita DSM 44233]
TCTTACTGACCGTTCGGTCAGT
>Namu_2483(paaR) Score=6.1 Pos=-43 [Nakamurella multipartita DSM 44233]
ACTGACCGAATGATCGGTCAGC
# TF - Zur: Namu_0066
>Namu_1072 Score=5.1 Pos=-28 [Nakamurella multipartita DSM 44233]
TAACGAGAACCGTTCTCAGTA
>Namu_3855(rpmG2) Score=4.7 Pos=-44 [Nakamurella multipartita DSM 44233]
TACTGAGAATCGGTCTCGTTA
>Namu_3856(rpmB2) Score=4.7 Pos=-127 [Nakamurella multipartita DSM 44233]
TAACGAGACCGATTCTCAGTA
# TF - NrdR: Namu_3977
>Namu_3977(nrdR) Score=4.9 Pos=-223 [Nakamurella multipartita DSM 44233]
CCCCTACATCTAGTAC
# TF - PdxR3: Namu_3402, Namu_1043
>Namu_3401(COG2364) Score=12.4 Pos=-61 [Nakamurella multipartita DSM 44233]
CAGACCAGTTT-(4)-CAACTGGTACT-(7)-CAGACCACATT
# TF - Svir_39240: Namu_4757
>Namu_4757(Svir_39240) Score=5.8 Pos=-43 [Nakamurella multipartita DSM 44233]
ATGGGTACATTAGTGGAGTAACTAACCACT
# TF - LndYR: Namu_3575, Namu_2305
>Namu_2305(lndYR) Score=6 Pos=-28 [Nakamurella multipartita DSM 44233]
ATTGCACTAGTTGAGTAGTGTAAT
>Namu_3575(lndYR) Score=5.4 Pos=-27 [Nakamurella multipartita DSM 44233]
GGTACACTAGTTAACTAGTCTTCT
# TF - Amir_6997: Namu_4799
>Namu_4801(alhA) Score=5.5 Pos=-819 [Nakamurella multipartita DSM 44233]
GATTGTTCAACAATT
>Namu_4799(Amir_6997) Score=5.5 Pos=-44 [Nakamurella multipartita DSM 44233]
AATTGTTGAACAATC
# TF - LldR: Namu_5224
>Namu_5297(lldD) Score=5 Pos=-78 [Nakamurella multipartita DSM 44233]
TGTGGCCTGACCACC
>Namu_5297(lldD) Score=5.8 Pos=-63 [Nakamurella multipartita DSM 44233]
TATGGTCAGACCACA
>Namu_5225(lldP) Score=6 Pos=-53 [Nakamurella multipartita DSM 44233]
TTTGGTCAGACCAAA
>Namu_3565(Noca_0644) Score=5.5 Pos=-345 [Nakamurella multipartita DSM 44233]
CTTGGTCAGACCACA
>Namu_1036(Noca_0644) Score=5.3 Pos=-174 [Nakamurella multipartita DSM 44233]
TTTGGTCTTACCATA
>Namu_5224 Score=6 Pos=-126 [Nakamurella multipartita DSM 44233]
TTTGGTCTGACCAAA
# TF - IolR: Namu_4543
>Namu_3354(iolR2) Score=5.3 Pos=-121 [Nakamurella multipartita DSM 44233]
AGCTTGTCCTGACAAAGT
>Namu_3353(iolG2) Score=5.3 Pos=-57 [Nakamurella multipartita DSM 44233]
ACTTTGTCAGGACAAGCT
>Namu_4542(iolC) Score=4.2 Pos=-143 [Nakamurella multipartita DSM 44233]
TATATGTCCTATCAAAGT
>Namu_4537(iolTA) Score=5.1 Pos=-348 [Nakamurella multipartita DSM 44233]
AGAATGTCAGAACAAAGT
>Namu_4543(iolR3) Score=4.2 Pos=-79 [Nakamurella multipartita DSM 44233]
ACTTTGATAGGACATATA
>Namu_5196(iolY) Score=4.6 Pos=-60 [Nakamurella multipartita DSM 44233]
ATGATGTCAGGACATTTG
>Namu_1848(iolG4) Score=4.9 Pos=-74 [Nakamurella multipartita DSM 44233]
AGTTTGTCTTGACAAGTG
# TF - AnsR: Namu_1298
>Namu_1299(aspA) Score=5.6 Pos=-127 [Nakamurella multipartita DSM 44233]
ACCTGTCCGACAGCT
>Namu_1298(ansR) Score=5.6 Pos=-108 [Nakamurella multipartita DSM 44233]
AGCTGTCGGACAGGT
# TF - HrcA: Namu_1571
>Namu_0179(hsp18) Score=6.8 Pos=-98 [Nakamurella multipartita DSM 44233]
TTGGCACTCTCGGTCGTCGAGTGCTAA
>Namu_4645(COG2331) Score=6.4 Pos=-61 [Nakamurella multipartita DSM 44233]
CTGGCACTGGGCACTGTCGAGTGCCAA
>Namu_1571(hrcA) Score=6.1 Pos=-57 [Nakamurella multipartita DSM 44233]
TTGGCAGCCGGAGCGGGCGAGTGCCAA
>Namu_4827(groL2) Score=6.3 Pos=-192 [Nakamurella multipartita DSM 44233]
TTGGCACTCGGAACCAACGAGTGCCAG
>Namu_4827(groL2) Score=6.8 Pos=-226 [Nakamurella multipartita DSM 44233]
CTTGCACTCTCCGCGGTCGAGTGCTAA
>Namu_1207(groS) Score=6.5 Pos=-156 [Nakamurella multipartita DSM 44233]
CTGGCACTCCCATGGCTAGAGTGCTAG
# TF - LexA: Namu_3979
>Namu_3396(ruvC) Score=4 Pos=-85 [Nakamurella multipartita DSM 44233]
CTGGACAGGTGTTCGC
>Namu_3979(lexA) Score=5.1 Pos=-202 [Nakamurella multipartita DSM 44233]
TCGAACGGACGTTCTA
>Namu_3979(lexA) Score=4.4 Pos=-186 [Nakamurella multipartita DSM 44233]
TCGAACGTCTGCACGA
>Namu_3979(lexA) Score=5.5 Pos=-123 [Nakamurella multipartita DSM 44233]
TCGAACGGGTGTTTGA
>Namu_3994(recA) Score=5 Pos=-132 [Nakamurella multipartita DSM 44233]
TCGAACAGGTGTACGT
>Namu_3994(recA) Score=3.9 Pos=-284 [Nakamurella multipartita DSM 44233]
TCGATCAGGCGCTGGA
>Namu_3157(PF02720) Score=4 Pos=-49 [Nakamurella multipartita DSM 44233]
GTGGACACCCGTTCGG
>Namu_5363(dnaB) Score=4.5 Pos=-98 [Nakamurella multipartita DSM 44233]
CAGAACACATGTCCGA
>Namu_1258(uvrD) Score=5.2 Pos=-77 [Nakamurella multipartita DSM 44233]
CCGAACAGGTGATCGA
# TF - ArgR: Namu_4126
>Namu_4131(argC) Score=4.8 Pos=-52 [Nakamurella multipartita DSM 44233]
CTGGATAACCATGCAT
# TF - PdxR2: Namu_0648
>Namu_0647(pdxO) Score=13.7 Pos=-59 [Nakamurella multipartita DSM 44233]
AGTGGCCTTT-(14)-AGTGGCCCTC-(3)-GGATGCCACT
# TF - SACE_6928: Namu_4809
>Namu_4808(PF00892) Score=6.2 Pos=-84 [Nakamurella multipartita DSM 44233]
CCTTTGGACCTG------------GGAATGGACTCC
# TF - Rex: Namu_0919
>Namu_1412(whiB) Score=5.7 Pos=-109 [Nakamurella multipartita DSM 44233]
ATGTGAAAGCATTCACAA
>Namu_0919(rex) Score=5.9 Pos=-110 [Nakamurella multipartita DSM 44233]
TTGTGCACGCGTTCACGA
>Namu_0973(COG0644) Score=6 Pos=-96 [Nakamurella multipartita DSM 44233]
TCGTGAACGAATTCACAA
# TF - PaaR: Namu_2483
>Namu_2491(paaA) Score=5.6 Pos=-70 [Nakamurella multipartita DSM 44233]
TCTTACTGACCGTTCGGTCAGT
>Namu_2491(paaA) Score=5 Pos=-66 [Nakamurella multipartita DSM 44233]
ACTGACCGTTCGGTCAGTTACA
>Namu_2483(paaR) Score=6 Pos=-43 [Nakamurella multipartita DSM 44233]
ACTGACCGAATGATCGGTCAGC
# TF - DasR: Namu_0953
>Namu_0953(dasR) Score=4.9 Pos=-47 [Nakamurella multipartita DSM 44233]
ATTGGCGTAGACCATT
>Namu_0958(nagE) Score=5.4 Pos=-169 [Nakamurella multipartita DSM 44233]
ATTGGTCTATGCCAAT
>Namu_0958(nagE) Score=5.5 Pos=-140 [Nakamurella multipartita DSM 44233]
GTTGGTCTATACCAAT
# TF - LtbR: Namu_1477
>Namu_1478(leuC) Score=4.4 Pos=-98 [Nakamurella multipartita DSM 44233]
TGTCCCATGAGGCGATACT
>Namu_1478(leuC) Score=4.9 Pos=-77 [Nakamurella multipartita DSM 44233]
ATTCCCACATAGTGAGATG
>Namu_1477(ltbR) Score=4.9 Pos=-32 [Nakamurella multipartita DSM 44233]
CATCTCACTATGTGGGAAT
>Namu_1477(ltbR) Score=4.4 Pos=-11 [Nakamurella multipartita DSM 44233]
AGTATCGCCTCATGGGACA
# TF - Zur: Namu_0066
>Namu_3856(rpmB2) Score=4.9 Pos=-126 [Nakamurella multipartita DSM 44233]
AACGAGACCGATTCTCAGT
>Namu_3855(rpmG2) Score=4.9 Pos=-43 [Nakamurella multipartita DSM 44233]
ACTGAGAATCGGTCTCGTT
>Namu_1072(Namu_1072) Score=5.5 Pos=-27 [Nakamurella multipartita DSM 44233]
AACGAGAACCGTTCTCAGT
# TF - AcnR: Namu_2292
>Namu_2293(acnA) Score=5.8 Pos=-158 [Nakamurella multipartita DSM 44233]
CAGGACAAGCGTACTG