# TF - SdhR: Daci_2428
>Daci_2429(mdh) Score=7.2 Pos=-157 [Delftia acidovorans SPH-1]
GATCATATCTTATATAAGACATAAGA
>Daci_2428(sdhR) Score=7.2 Pos=-87 [Delftia acidovorans SPH-1]
TCTTATGTCTTATATAAGATATGATC
>Daci_4617(aceA) Score=5.3 Pos=-1 [Delftia acidovorans SPH-1]
GATGAGGTCTTCTATAAGACTTAAAT
>Daci_4617(aceA) Score=5.9 Pos=-31 [Delftia acidovorans SPH-1]
AATTTAGTCTTGTATAAGACACAAGA
# TF - HexR: Daci_5676
>Daci_0828(pgk) Score=5.2 Pos=-27 [Delftia acidovorans SPH-1]
CTGAAACCGGATTACAG
>Daci_0930(pykA) Score=5.5 Pos=-38 [Delftia acidovorans SPH-1]
TTGAAACCCGATTACAA
>Daci_5599(zwf) Score=4.8 Pos=-47 [Delftia acidovorans SPH-1]
TGGTAACCAAGTTACCA
>Daci_5598(pgi) Score=4.3 Pos=-24 [Delftia acidovorans SPH-1]
TGGTAATCAGATTACTT
>Daci_5598(pgi) Score=4.8 Pos=-109 [Delftia acidovorans SPH-1]
TGGTAACTTGGTTACCA
# TF - NadQ: Daci_1540
>Daci_1541(nadC) Score=6.2 Pos=-11 [Delftia acidovorans SPH-1]
ATATACTCAAAATGAGCATTA
>Daci_2150(nadA) Score=6.2 Pos=-67 [Delftia acidovorans SPH-1]
TAATACTCAAATTGAGCATAT
>Daci_1541(nadC) Score=5.5 Pos=-81 [Delftia acidovorans SPH-1]
TTATGCTCGTATCTAGCATAA
# TF - NrtR: Daci_5757
>Daci_5758(nrtX) Score=5.8 Pos=-58 [Delftia acidovorans SPH-1]
TAAGTTGCACTATGCAACCCA
>Daci_5758(nrtX) Score=6 Pos=-35 [Delftia acidovorans SPH-1]
CGAGTTGTACAGAACAACTTA
>Daci_5757(nrtR) Score=5.7 Pos=-74 [Delftia acidovorans SPH-1]
TAAGTTGTTCTGTACAACTCG
>Daci_5757(nrtR) Score=6 Pos=-51 [Delftia acidovorans SPH-1]
TGGGTTGCATAGTGCAACTTA
# TF - NrdR: Daci_4956
>Daci_1501(nrdA) Score=5.5 Pos=-172 [Delftia acidovorans SPH-1]
ACACTACAGGTAGTGC
>Daci_1501(nrdA) Score=5.4 Pos=-141 [Delftia acidovorans SPH-1]
ACACCATATCTAGTGT
# TF - NikR: Daci_3111
>Daci_3112(omp_Ni) Score=7.4 Pos=-42 [Delftia acidovorans SPH-1]
GTATGAA-------------TTCATAC
# TF - Zur: Daci_3951
>Daci_3951(zur) Score=6.9 Pos=-72 [Delftia acidovorans SPH-1]
ATAATGCAACCCGGTTGCGATAA
# TF - LldR: Daci_3345
>Daci_3344(lldP) Score=6 Pos=-309 [Delftia acidovorans SPH-1]
AATTGGTCTGACCAATA
>Daci_3344(lldP) Score=5.9 Pos=-183 [Delftia acidovorans SPH-1]
AATTGGTTGGACCAATT
# TF - NorR: Daci_1078
>Daci_1078(norR) Score=4.3 Pos=-56 [Delftia acidovorans SPH-1]
ATGCGTCAATATGACCTTC
>Daci_1078(norR) Score=4.3 Pos=-10 [Delftia acidovorans SPH-1]
CGCAGTCTTTATGACCACA
>Daci_1079(hmp) Score=4.3 Pos=-129 [Delftia acidovorans SPH-1]
TGTGGTCATAAAGACTGCG
>Daci_1079(hmp) Score=4.3 Pos=-83 [Delftia acidovorans SPH-1]
GAAGGTCATATTGACGCAT
# TF - HutC: Daci_0148
>Daci_0145(hisX) Score=5 Pos=-217 [Delftia acidovorans SPH-1]
CAGGTTGTATGGACAAGCTT
>Daci_0145(hisX) Score=5.1 Pos=-115 [Delftia acidovorans SPH-1]
AATCCTGTATATACATGTCC
>Daci_0094(hisT) Score=5.2 Pos=-449 [Delftia acidovorans SPH-1]
CATATTGTATATACAGGCTT
>Daci_0149(hutH) Score=4.9 Pos=-67 [Delftia acidovorans SPH-1]
GATATTGTATAGACAGGCAT
# TF - IscR: Daci_4000
>Daci_4000(iscR) Score=5.8 Pos=-192 [Delftia acidovorans SPH-1]
TTACCCGACAAAATTGATGGGGAAT
# TF - NtrC: Daci_4999
>Daci_0301(CHP02001) Score=5.4 Pos=-208 [Delftia acidovorans SPH-1]
TGCACTATCTTGGTGCA
>Daci_0301(CHP02001) Score=4.7 Pos=-136 [Delftia acidovorans SPH-1]
TGCACAAAGCCGGTGCA
>Daci_5002(glnA) Score=4.7 Pos=-84 [Delftia acidovorans SPH-1]
TGCACTCAATGGATGCA
>Daci_5002(glnA) Score=5.8 Pos=-286 [Delftia acidovorans SPH-1]
TGCACTCATTTGGTGCA
>Daci_5002(glnA) Score=5.6 Pos=-214 [Delftia acidovorans SPH-1]
TGCACCGATTTGGTGAA
>Daci_2377(nrtA) Score=4.9 Pos=-277 [Delftia acidovorans SPH-1]
AGCACCGACTTGGTGCC
>Daci_2371(nasD) Score=4.6 Pos=-252 [Delftia acidovorans SPH-1]
CGCACCGCTTTGATGCA
# TF - ModE: Daci_1521
>Daci_1521(modE) Score=7 Pos=-86 [Delftia acidovorans SPH-1]
CGCTATTCCGTTGGTGAATAGCG
>Daci_1520(modA) Score=6.8 Pos=26 [Delftia acidovorans SPH-1]
CGCTATTCACCAACGGAATAGCG
# TF - LexA: Daci_3565
>Daci_3565(lexA) Score=4.7 Pos=-64 [Delftia acidovorans SPH-1]
TACTGTATAAATCATCAGAT
>Daci_3565(lexA) Score=5.8 Pos=-83 [Delftia acidovorans SPH-1]
AACTGGTTAAAAATACAGAT
>Daci_5814(PF08774) Score=5.6 Pos=-54 [Delftia acidovorans SPH-1]
GACTGTATAAAGATACAGTT
>Daci_4263(imuA) Score=5.8 Pos=-35 [Delftia acidovorans SPH-1]
TGCTGTATATTCATACAGTA
>Daci_2403(PF04055) Score=5.6 Pos=2 [Delftia acidovorans SPH-1]
GACTGTATTTTTATACAGTT
>Daci_0874(recA) Score=4.3 Pos=-66 [Delftia acidovorans SPH-1]
TACTGTTCAAGCATCCAGCC
# TF - LiuR: Daci_5993
>Daci_5993(liuR) Score=6.4 Pos=-46 [Delftia acidovorans SPH-1]
ATTGACGTTAACGTCAAC
>Daci_5992(paaI) Score=6.6 Pos=-37 [Delftia acidovorans SPH-1]
ATTGACGTTTACGTAAAC
>Daci_5992(paaI) Score=5 Pos=-31 [Delftia acidovorans SPH-1]
GTTTACGTAAACGTAATT
>Daci_2390(etfB) Score=5.3 Pos=-44 [Delftia acidovorans SPH-1]
GTTTACGTAAACGTCAAT
>Daci_2390(etfB) Score=5.2 Pos=-50 [Delftia acidovorans SPH-1]
ATTTCGGTTTACGTAAAC
>Daci_4744(paaH) Score=5.6 Pos=-42 [Delftia acidovorans SPH-1]
AGTTACGTTTACGTCAAC
# TF - FadP: Daci_1336
>Daci_3313(fadB) Score=5.5 Pos=-41 [Delftia acidovorans SPH-1]
TCGCACGATCGTTCTT
>Daci_2390(etfB) Score=5.2 Pos=-138 [Delftia acidovorans SPH-1]
TGGCACGATCGTTCTT
>Daci_4310(etfD) Score=4.5 Pos=-60 [Delftia acidovorans SPH-1]
CCGAACGAACGTTCGG
>Daci_1336(fadP) Score=5 Pos=-33 [Delftia acidovorans SPH-1]
TAGCACGAACGTTCGT
# TF - VanR: Daci_1351
>Daci_1351(vanR) Score=4.9 Pos=-101 [Delftia acidovorans SPH-1]
TGTATACA
>Daci_1351(vanR) Score=4.9 Pos=-37 [Delftia acidovorans SPH-1]
TGTATACA
>Daci_1351(vanR) Score=4.9 Pos=-142 [Delftia acidovorans SPH-1]
TGTATACA
# TF - PaaR: Daci_0571, Daci_0807
>Daci_0809(paaK) Score=5.7 Pos=-59 [Delftia acidovorans SPH-1]
TCCTACCGTCCGGTCGGTCAAT
>Daci_0809(paaK) Score=4.6 Pos=-63 [Delftia acidovorans SPH-1]
ATAATCCTACCGTCCGGTCGGT
>Daci_0568(paaF) Score=5.2 Pos=-71 [Delftia acidovorans SPH-1]
ATTTACCGACCATTCGGTAAAT
>Daci_0808(paaZ) Score=6 Pos=-111 [Delftia acidovorans SPH-1]
ATTGACCGACCGGACGGTAGGA
# RNA - FMN
>Daci_2196(ribH2) Score=92.2 Pos=-277 [Delftia acidovorans SPH-1]
AGCGTTCTCAGGGCGGGGCGAAATTCCCCACCGGCGGTATCTGGATCTGCCTTTCGGCATGTGTCCAGCAGCCCGCGAGCGCCCGGCAAGCCGCAAGGCCGGCCGGGGTCAGCAGATCTGGTGAGATGCCAGAGCCGACGGTCACAGTCCGGATGAAAGAGATCGCGCAG
# RNA - TPP
>Daci_4530(PF04443) Score=45.7 Pos=-160 [Delftia acidovorans SPH-1]
GCCCTCCGCTCCGGGGTGCACGCCAGTGCTGAGATCCACACCCGAGAACTTGAACCGGGTCATTCCGGCGGAAGAAGAGCTTGCACCCCTGCG
>Daci_3293(thiO) Score=23.4 Pos=-79 [Delftia acidovorans SPH-1]
TGCCGCGCAGCGCCCCTGCACCCGATCCAGGTCATGCTGGCGTGGGGAGTTTCAATCAATCGGGG
>Daci_2313(thiC) Score=54.4 Pos=-390 [Delftia acidovorans SPH-1]
GCTCTGCTCCGGGGTGTGCTGATGCACTGAGATGCCAACCGGTCCATGCGCTGCATGGGCCAGGCGGCGAACCCGACGAACTTGATCCGGTTGATACCGGCGGAAGAAGAGCGGGACCCTGAAGCGG
# TF - HrcA: Daci_5419
>Daci_5660(groS) Score=7 Pos=-114 [Delftia acidovorans SPH-1]
TTAGCACTCGTTGGGCATGAGTGCTAA
>Daci_1694(rpoH) Score=7 Pos=-57 [Delftia acidovorans SPH-1]
TTAGCACTCGGTCATAACGAGTGCTAA
# TF - GntR: Daci_3760
>Daci_3761(gntK) Score=6.3 Pos=-120 [Delftia acidovorans SPH-1]
TTATGATAGCGCTATCCCAA
>Daci_3760(gntR) Score=6.2 Pos=-175 [Delftia acidovorans SPH-1]
TTGGGATAGCGCTATCCATG
>Daci_3760(gntR) Score=6.3 Pos=-56 [Delftia acidovorans SPH-1]
TTGGGATAGCGCTATCATAA
# TF - SoxR: Daci_1189
>Daci_3895(PF07690) Score=5.6 Pos=-45 [Delftia acidovorans SPH-1]
ATCTCAACCGCACTTGAGGT
>Daci_1189(soxR) Score=6.5 Pos=-72 [Delftia acidovorans SPH-1]
ACCTCAACCAAAGTTGAGGT
>Daci_1188(PF01042) Score=6.5 Pos=-77 [Delftia acidovorans SPH-1]
ACCTCAACTTTGGTTGAGGT
# TF - MerR: Daci_0486
>Daci_0485(merT) Score=6.2 Pos=-63 [Delftia acidovorans SPH-1]
ACTCCGTAGTTGACTACGGAAG
# TF - CadR-PbrR: Daci_0478, Daci_2916
>Daci_0479(cadA) Score=5.7 Pos=-274 [Delftia acidovorans SPH-1]
ACCTTGGAGCTACTCCAAGGT
>Daci_2915(cadA) Score=4.9 Pos=-34 [Delftia acidovorans SPH-1]
ACCTTGAAGTGACTTCACCGT
# RNA - SAH_riboswitch
>Daci_0232(metH) Score=23.3 Pos=-152 [Delftia acidovorans SPH-1]
GCCCGAGGAGCGTTGCAGCGCGGCACCCGCCCATCCGTACACCGGATCGCGTGCCGCGTCAGGCTTGGGCCAGGT
>Daci_5919(ahcY) Score=52.2 Pos=-156 [Delftia acidovorans SPH-1]
CCTCTCCGAGGAGCGTTGCAGCGGCCCCCACACATCAGGCGTGGTCGCGAGGCTCGGAGTCATACCTGCAACGACGCTCGCCCACG
# TF - CueR: Daci_0034
>Daci_0035(copZ) Score=5.3 Pos=-77 [Delftia acidovorans SPH-1]
ACCTTGCCATGGTGTCAGGGT
>Daci_5724(copA2) Score=4.9 Pos=-58 [Delftia acidovorans SPH-1]
ACCTTGACATGGTGGCAATCT
# TF - Aave_3515: Daci_5735
>Daci_5731(COG3819) Score=3.4 Pos=-105 [Delftia acidovorans SPH-1]
TTTTGTTGAACAAAA
>Daci_5732 Score=3.3 Pos=-127 [Delftia acidovorans SPH-1]
GGATATTGAACATCC
>Daci_5732 Score=3.4 Pos=-266 [Delftia acidovorans SPH-1]
TTTTGTTCAACAAAA
>Daci_5731(COG3819) Score=3.3 Pos=-244 [Delftia acidovorans SPH-1]
GGATGTTCAATATCC
# TF - Daci_3836: Daci_3836
>Daci_3836(Daci_3836) Score=5.2 Pos=-33 [Delftia acidovorans SPH-1]
ACTTGTGTACAAGA
# TF - UreR: Daci_5075, Daci_0231
>Daci_5076(ureT) Score=5.6 Pos=-94 [Delftia acidovorans SPH-1]
ACTGGTATTACCAGT
>Daci_0231(ureR) Score=5.2 Pos=-45 [Delftia acidovorans SPH-1]
CGTGGTCTGACCAGT
>Daci_5076(ureT) Score=5.5 Pos=53 [Delftia acidovorans SPH-1]
ACCGGTCATACCAGT
>Daci_5077(ureH) Score=5.5 Pos=-194 [Delftia acidovorans SPH-1]
ACTGGTATGACCGGT
>Daci_5077(ureH) Score=5.6 Pos=-47 [Delftia acidovorans SPH-1]
ACTGGTAATACCAGT
# TF - MetR: Daci_5860
>Daci_5860(metR) Score=4.2 Pos=-19 [Delftia acidovorans SPH-1]
ATGAATTTTTCTCAC
# TF - FruR2: Daci_2662
>Daci_2662(fruR2) Score=5.2 Pos=-127 [Delftia acidovorans SPH-1]
TTTTGGGAACGTTCCCAACC
>Daci_2662(fruR2) Score=4.5 Pos=-17 [Delftia acidovorans SPH-1]
CAACGGGAACGATTGCATTG
>Daci_2663(fruB) Score=4.5 Pos=-108 [Delftia acidovorans SPH-1]
CAATGCAATCGTTCCCGTTG
>Daci_2663(fruB) Score=5.2 Pos=2 [Delftia acidovorans SPH-1]
GGTTGGGAACGTTCCCAAAA
# TF - PdxW: Daci_2817
>Daci_2818(PF00583) Score=14.4 Pos=-94 [Delftia acidovorans SPH-1]
CGTGGCACCAT-(13)-TATGGCGCTTT-(2)-ATGATGCCACG
# TF - Daci_1890: Daci_1890
>Daci_1891(COG697) Score=13.4 Pos=-111 [Delftia acidovorans SPH-1]
TTCTGTAGTGG-(8)-GCATAACAGTT-(6)-AATTGTATTGG
# TF - ModE2: Daci_4259
>Daci_4259(modE2) Score=4.2 Pos=-60 [Delftia acidovorans SPH-1]
TTCGCTGTAGCGATCCATGCATTGCGTA
>Daci_3883(modA) Score=5.7 Pos=-75 [Delftia acidovorans SPH-1]
TTCATCGTATACGATTGAATATTTCGTA
# TF - PdxQ3: Daci_2843
>Daci_2844(COG2050) Score=9.7 Pos=-100 [Delftia acidovorans SPH-1]
AGTGTAGC-(1)-AGGACAAT-(6)-ATTGTTCC
# TF - PdxQ2: Daci_5878
>Daci_5877(COG0346) Score=8.5 Pos=-51 [Delftia acidovorans SPH-1]
ATGAGTGTGCCGTGACACTATT
>Daci_5878(pdxQ2) Score=8.5 Pos=-40 [Delftia acidovorans SPH-1]
AATAGTGTCACGGCACACTCAT
# TF - Daci_0595: Daci_0595, Daci_3668
>Daci_0594(PF01810) Score=15.5 Pos=-175 [Delftia acidovorans SPH-1]
TCACTGTATCG-(10)-CAATACAGAAC-(15)-CAACTGTATTG-(0)-GCACTGTACAG
>Daci_3667(PF01810) Score=18 Pos=-142 [Delftia acidovorans SPH-1]
CAAGTGTCAGG-(10)-CAGGCCAGTTG-(15)-AAAGTGTACTG-(0)-CTACTGTACCG
# TF - YdcR: Daci_2454
>Daci_2449(COG0348) Score=8.6 Pos=-130 [Delftia acidovorans SPH-1]
ATCTGATACGGTCGA---------ATCTGCTGCTACCGC
# TF - GabR: Daci_5048
>Daci_5049(gabT) Score=12.8 Pos=-97 [Delftia acidovorans SPH-1]
ATTGGCAC-(16)-GATGGCTC-(8)-GAACCAAT
# TF - Daci_3053: Daci_3053, Daci_3062
>Daci_3053(Daci_3053) Score=5.8 Pos=-102 [Delftia acidovorans SPH-1]
TTTTTGCATTCAAAAT
>Daci_3053(Daci_3053) Score=4.6 Pos=-36 [Delftia acidovorans SPH-1]
AAAATGAATGCAAAAT
>Daci_3052(sgaA) Score=4.6 Pos=-138 [Delftia acidovorans SPH-1]
ATTTTGCATTCATTTT
>Daci_3052(sgaA) Score=5.8 Pos=-72 [Delftia acidovorans SPH-1]
ATTTTGAATGCAAAAA
# TF - PdxQ: Daci_2224
>Daci_2223(pdxO2) Score=12.8 Pos=-49 [Delftia acidovorans SPH-1]
AACTGGTCTGC-(13)-AACTGGATTTT-(3)-TTGTGCCAGGG
# TF - PdxR: Daci_3711
>Daci_3710(PF03594) Score=12.2 Pos=-114 [Delftia acidovorans SPH-1]
AAGTGGTCTG-(13)-AAGTGTATGG-(6)-CAGTCCACTT
# TF - Daci_4286: Daci_4286
>Daci_4287(PF00797) Score=10 Pos=-92 [Delftia acidovorans SPH-1]
ATCTGTACAGG-(14)-TTCTGCTTATA-(7)-TGATGGCCCCG
# TF - Aave_3430: Daci_5367
>Daci_5368 Score=18.1 Pos=35 [Delftia acidovorans SPH-1]
ACAGATACAGATCC-(11)-AGCACAACAGATCC-(9)-TGCACTGCTGCGAT-(11)-CGGGCTGTGCCTGT
>Daci_5367(Aave_3430) Score=13 Pos=-157 [Delftia acidovorans SPH-1]
ACAGGCACAGCCCG-(11)-ATCGCAGCAGTGCA-(9)-GGATCTGTTGTGCT-(11)-GGATCTGTATCTGT
# TF - Daci_0288: Daci_0288
>Daci_0287(mvaA) Score=13.3 Pos=-87 [Delftia acidovorans SPH-1]
ACTGTTCCC-(4)-ACTGTACCT-(8)-CGGTACAGT
# TF - TauR: Daci_2022, Daci_5672
>Daci_2020(tauX) Score=8.2 Pos=-144 [Delftia acidovorans SPH-1]
CTGGACCTAA-------------CTGGTTCTAA
>Daci_2019(tauY) Score=7.4 Pos=-172 [Delftia acidovorans SPH-1]
CTGGCTCTAT-------------GTGGCGCTAA
>Daci_5671(odpA) Score=6.3 Pos=-112 [Delftia acidovorans SPH-1]
CTGGCTCCTA-------------GTGGCCCCCG
# TF - GguR: Daci_0253
>Daci_0253(gguR) Score=5.6 Pos=-26 [Delftia acidovorans SPH-1]
ACGTTGTCGTACAACTT
>Daci_0252(tctC1) Score=5.3 Pos=-43 [Delftia acidovorans SPH-1]
CAGTTGTACGACAACTG
>Daci_0254(gudD2) Score=5.6 Pos=-73 [Delftia acidovorans SPH-1]
AAGTTGTACGACAACGT
# TF - TalR: Daci_4288
>Daci_4288(talR) Score=7 Pos=-132 [Delftia acidovorans SPH-1]
AAATGATATCGTTGTCATTT
>Daci_4288(talR) Score=6.8 Pos=-212 [Delftia acidovorans SPH-1]
GAATGACATCGTTGTCATTT
>Daci_4289(tctC) Score=6.8 Pos=-37 [Delftia acidovorans SPH-1]
AAATGACAACGATGTCATTC
>Daci_4289(tctC) Score=7 Pos=-117 [Delftia acidovorans SPH-1]
AAATGACAACGATATCATTT