# TF - DosR: MAB_3891c
>MAB_3902c(Rv2004c) Score=3.9 Pos=-96 [Mycobacterium abscessus ATCC 19977]
AGGGGCCCGAAGTCACCG
>MAB_3902c(Rv2004c) Score=4.5 Pos=-117 [Mycobacterium abscessus ATCC 19977]
CAGGGCCCTTGGTCACCG
>MAB_2489(MSMEG_3940) Score=3.9 Pos=-108 [Mycobacterium abscessus ATCC 19977]
TATGGCCGAAAGTCACCA
>MAB_2489(MSMEG_3940) Score=3.8 Pos=-182 [Mycobacterium abscessus ATCC 19977]
CTGGGCCTTGGGTCCCAA
>MAB_3903(acg) Score=3.7 Pos=-161 [Mycobacterium abscessus ATCC 19977]
GTGGGACCGAAGTCACCA
>MAB_3903(acg) Score=3.9 Pos=-96 [Mycobacterium abscessus ATCC 19977]
CGGTGACTTCGGGCCCCT
>MAB_3903(acg) Score=4.5 Pos=-75 [Mycobacterium abscessus ATCC 19977]
CGGTGACCAAGGGCCCTG
>MAB_3902c(Rv2004c) Score=3.7 Pos=-31 [Mycobacterium abscessus ATCC 19977]
TGGTGACTTCGGTCCCAC
>MAB_3354(desA) Score=4.6 Pos=-96 [Mycobacterium abscessus ATCC 19977]
GAGGGACCTTCGTCACTA
>MAB_3891c(dosR) Score=4.5 Pos=-132 [Mycobacterium abscessus ATCC 19977]
TAGGGACCAAAGACCGTA
# RNA - PyrR
>MAB_2832c(pyrR) Score=30 Pos=-113 [Mycobacterium abscessus ATCC 19977]
GACATCCTTTAACGATCCGTCCAGTGAGGCGGAGAAGGAGGTCTCGCGTAAGCGTGGGCGCATCATCTGACT
# TF - PaaR: MAB_0901c
>MAB_0901c(paaR) Score=5.9 Pos=-92 [Mycobacterium abscessus ATCC 19977]
AATAACCGATCGTTCGGTCGGT
>MAB_0900c(paaZ) Score=5.4 Pos=-35 [Mycobacterium abscessus ATCC 19977]
ACCGAACGAATGGACGGTTGGT
>MAB_0902(paaJ) Score=6.2 Pos=-44 [Mycobacterium abscessus ATCC 19977]
ACCGACCGAACGATCGGTTATT
>MAB_0906(paaA) Score=6.2 Pos=-37 [Mycobacterium abscessus ATCC 19977]
AATAACCGAACATTCGGTCGGT
# RNA - SAM-IV
>MAB_3687(metY) Score=88.7 Pos=-319 [Mycobacterium abscessus ATCC 19977]
GTCATGAGTACCAGCGTCAAGCCCCGGCTCGCTGGTCGGCAACCCTCCAACCGCGGTGGGGTGCCCCGGGTGATGACCAGGTTGAGTAGCCGACTGGGCTGTCAGAGGTTGATGAC
>MAB_0512(MAB_0512) Score=103.2 Pos=-144 [Mycobacterium abscessus ATCC 19977]
GTCATGAGAACCAGCGACAAGCCCTGGCTAGCTGGTCGGCAACCCTCCACCACGGTGGGGTGCTCCAGGTGACGACCTGGCCGCGCTCAACCGTGCGTGGCAAGCGTGGACTCG
# RNA - ydaO-yuaA
>MAB_0869c(rpfA) Score=54 Pos=-217 [Mycobacterium abscessus ATCC 19977]
CCATACCCGCGCACCGAGCTCCGTCCCTCGGGTGTGGACCGCGTCGGAAGACCAAGGGACGGAGACGGGGGACCCATCCGCCGGAGATCCACCCGATCTCCAGCACGAACCTTGATGGTTCTTGGGGTGAAGCCCGGGCAACCGGGCCGAGCGACCTCTTGCTCGAACCCGACAGCTGACCTCGCAGGTGCGTCACAGAGAGGAACA
# RNA - yybP-ykoY
>MAB_0511c(ykoY) Score=52 Pos=-136 [Mycobacterium abscessus ATCC 19977]
ACTGACTACTGGAGGGGAGTATTCCTTCGCTGCGGTGTCGTCATCACATCGGCCATTGGCGGTCCGGTCGGTGCCGCGGGCCGGCCATCTGCCGGCGGAAGAGACCTCCGGCGTTTTG
# RNA - L10_leader
>MAB_3877c(rplJ) Score=16.7 Pos=-235 [Mycobacterium abscessus ATCC 19977]
GTAACCTAATCCAGCTCCACCGAAGACCGTCGGTCACCTCGTCAGAGGTTGAAGGTTCAGGATTCGTCCTGACGGCCCACGCAGGAGGACGAGGTACGACCTGTGGATCAAAAGTCCGTAGTTCTTCACGCCCCGACCTGTCTGCGTCGGGGCGTTTGTCGTTTCAGAT
# RNA - TPP
>MAB_4218c(thiO) Score=55.1 Pos=-113 [Mycobacterium abscessus ATCC 19977]
GTGTAAGTAACGCGGGAGCCCCGGGATGTCGGGGCTGAGAGTGGGCCAAGGACTCCGGCCCTGACCGTCGTACCTGATCCGGGTCATGCCGGCGAAGGGAGTTGGCTCCGATTGTGA
>MAB_4196(thiC) Score=55.7 Pos=-103 [Mycobacterium abscessus ATCC 19977]
CCCACAAACACGGGAGCACGCACCAGCGTGCTGAGAGGACGGCTAGGGCCGTCGACCGTATGAACCTGACCGGGTAATGCCGGCGTAGGGAGGAGAATTAAGCATGT
# RNA - Glycine
>MAB_2407(gcvB) Score=44.7 Pos=-12 [Mycobacterium abscessus ATCC 19977]
CGGGAGAGTGTCATGACGGCCAGTCATGACCGCCGAAGGAGCAACACCTCTCCGTCAATCTCTCAGGCCCCCGAACCGCCT
# RNA - ykoK
>MAB_4716c(COG1914) Score=137 Pos=-536 [Mycobacterium abscessus ATCC 19977]
GTCAGCACCTCGCTAGGCGAGGCTCCTGCACGAACACAGGCCACTGATCCGACGACGTCGAGAGACGCCCAGGGTTAGGACAGATCTCCCCGGCTTAAGGGGTGATCCGAGGTGGCTTCCCGTCCAGGGATTACGTCGTGCAGTGCCGAAGCTCTGACGAGAGAGGTGGTCG
# RNA - Cobalamin
>MAB_0549c(btuC3) Score=98.1 Pos=-325 [Mycobacterium abscessus ATCC 19977]
ATAGTTTTGGCGCCGCGTTGGTTTCTCCGAAGCACCGAGGAATGCTTCCGGGGATCGCAAGAGGGAATCCGGTGTGAATCCGGAGCTGCCCCGCAGCGGTGAGTGGAAACGACGGCGGCACGTATTGCACTGGGCCCAGGCCCGGGAAGCAGCCGCTGGTAGGTGAGGCGTGCGACGCCTCGTGTCCACGAGTCCGAAGACCTGCCACCGCGGCCGTACCACCA
>MAB_4623c(metE) Score=85.7 Pos=-350 [Mycobacterium abscessus ATCC 19977]
GCCGTTGTCAGCATCGAGTGGCGGGCCCTACGGGGGCCGGCACAAGAGGGAACCCGGTGAGAATCCGGGACTGTCCCGCAGCGGTATGCAGGAACGATCGCCGTCATAAGCACTGGGAATGCCACCAACGCTCCTGGGAAGCGACGGCCCGTAGGAAAACCTGAGCCCGGGTAATGCCTGTAAGTCCGAAGACCTGCCAGTTGTGTCGGATGCGCC
# RNA - T-box(Ile)
>MAB_2705c(ileS) Score=31.9 Pos=-224 [Mycobacterium abscessus ATCC 19977]
CATATCAACGCACCCGAATAGAATCGCTGTTACCGATACTGATCCGGCTATCACCGGGGAGTCTCCGGAAGAAATGCGTGAGCAGAGTAGAACCGGACGGGTAGGCCCGTCACAGCCGTTGCGAGAGGCCCCGGCCAGGTCGGGGCAAGCGGGGTGGTACCGCGGAGGTACGCCGACGGCGTCCCATCGTCCCCGTG
# RNA - SAH_riboswitch
>MAB_2129(metH) Score=22.7 Pos=-95 [Mycobacterium abscessus ATCC 19977]
TGGTCGAGAGGCGTTGCAACGGTTCGGGGATCACAGCCCCGTGACCGCCACGCTCGGCAGAGTTAAGGACGCCTTCCGCTCTG
# TF - NrdR: MAB_3036c
>MAB_3404c(nrdF) Score=4.8 Pos=-73 [Mycobacterium abscessus ATCC 19977]
CCCCTAGGGGTAGTGT
>MAB_3415c(nrdH) Score=5.2 Pos=-188 [Mycobacterium abscessus ATCC 19977]
ACACTAGGTGTAGTGT
>MAB_3415c(nrdH) Score=4.9 Pos=-220 [Mycobacterium abscessus ATCC 19977]
TCAGAACATCTTGTAT
>MAB_3404c(nrdF) Score=4.8 Pos=-105 [Mycobacterium abscessus ATCC 19977]
CCACAACACGTTGTGT
# TF - Zur: MAB_1678c
>MAB_1046c(yciC2) Score=4.7 Pos=-19 [Mycobacterium abscessus ATCC 19977]
TAATGGTTATCATTATCATGT
>MAB_0577c(znuA) Score=6.5 Pos=-43 [Mycobacterium abscessus ATCC 19977]
TAATGAAAATCGTTTTCATTA
>MAB_0334c(rpmB1) Score=5.3 Pos=-35 [Mycobacterium abscessus ATCC 19977]
TGTCGAAAATGATTCCCATTA
>MAB_0334c(rpmB1) Score=5.8 Pos=-90 [Mycobacterium abscessus ATCC 19977]
AAATGCAAACGATTTTCATTA
>MAB_1046c(yciC2) Score=6.1 Pos=-25 [Mycobacterium abscessus ATCC 19977]
TAATGATAATGGTTATCATTA
>MAB_0335(yciC) Score=5.3 Pos=-106 [Mycobacterium abscessus ATCC 19977]
TAATGGGAATCATTTTCGACA
>MAB_0335(yciC) Score=5.8 Pos=-51 [Mycobacterium abscessus ATCC 19977]
TAATGAAAATCGTTTGCATTT
# TF - NrtR: MAB_2675
>MAB_2675(nrtR) Score=7.1 Pos=-23 [Mycobacterium abscessus ATCC 19977]
GTTTTCGACTTATGATCGAAAAC
>MAB_2674c(nadA) Score=7.1 Pos=-82 [Mycobacterium abscessus ATCC 19977]
GTTTTCGATCATAAGTCGAAAAC
# TF - PdxR3: MAB_3387
>MAB_3386c(COG2364) Score=14.6 Pos=-61 [Mycobacterium abscessus ATCC 19977]
AAAGCCAGTGT-(4)-CAACTGGCTAT-(7)-CAAGCCAGTTG
# TF - PhnF: MAB_1498c
>MAB_1499(COG0665) Score=6.4 Pos=-32 [Mycobacterium abscessus ATCC 19977]
ATTGGTCTAGACCAAT
>MAB_1499(COG0665) Score=6.4 Pos=-79 [Mycobacterium abscessus ATCC 19977]
ATTGGTCTATACCAAT
>MAB_1498c(phnF) Score=6.4 Pos=-151 [Mycobacterium abscessus ATCC 19977]
ATTGGTATAGACCAAT
>MAB_1498c(phnF) Score=6.4 Pos=-198 [Mycobacterium abscessus ATCC 19977]
ATTGGTCTAGACCAAT
# TF - MSMEG_4140: MAB_0196c
>MAB_0197(pcaC) Score=9.5 Pos=-69 [Mycobacterium abscessus ATCC 19977]
GAATTGGCCCAC------------GAATTGAACCAT
# TF - HrcA: MAB_1665
>MAB_1084c(COG2331) Score=6.6 Pos=-63 [Mycobacterium abscessus ATCC 19977]
CTAGCACTCCAAGCGGTAGAGTGCTAG
>MAB_0650(groL2) Score=6.5 Pos=-131 [Mycobacterium abscessus ATCC 19977]
TTGGCACTCACGACCGGTGAGTGCTAG
>MAB_0650(groL2) Score=6.7 Pos=-166 [Mycobacterium abscessus ATCC 19977]
CTTGCACTCGCCATGGCCGAGTGCTAA
>MAB_3732c(groS) Score=6.9 Pos=-162 [Mycobacterium abscessus ATCC 19977]
CTAGCACTCTCATGTATAGAGTGCTAG
# TF - LexA: MAB_3038
>MAB_2868c(splB) Score=5.3 Pos=-24 [Mycobacterium abscessus ATCC 19977]
TCGAACATATGTTCGC
>MAB_4752(PF02720) Score=5.3 Pos=-8 [Mycobacterium abscessus ATCC 19977]
TCAAACGCATGTTCGA
>MAB_3713c(Rv3395c) Score=5.6 Pos=-41 [Mycobacterium abscessus ATCC 19977]
TCGAACATATGTTCTA
>MAB_2884c(ruvC) Score=5.4 Pos=-82 [Mycobacterium abscessus ATCC 19977]
TCGAACAACTGTTCTA
>MAB_3703c(dnaE2) Score=5.9 Pos=-73 [Mycobacterium abscessus ATCC 19977]
TCGAACAAATGTTCGA
>MAB_1120c(alkB) Score=5.5 Pos=-28 [Mycobacterium abscessus ATCC 19977]
TCGAACGTATGTGCGA
>MAB_3060c(recA) Score=5.2 Pos=-143 [Mycobacterium abscessus ATCC 19977]
TCGAACAGATGTTCGC
>MAB_3038(lexA) Score=5.6 Pos=-48 [Mycobacterium abscessus ATCC 19977]
TCGAACACATGTTTGA
>MAB_3038(lexA) Score=5.5 Pos=-169 [Mycobacterium abscessus ATCC 19977]
TCGATCATGTGTTCGA
>MAB_3038(lexA) Score=5.1 Pos=-150 [Mycobacterium abscessus ATCC 19977]
CCGAACATGTGATCGA
# TF - ArgR: MAB_2341
>MAB_2336(argC) Score=5.1 Pos=-37 [Mycobacterium abscessus ATCC 19977]
TTTGCGCTCTTGTGCATA
# TF - PdxQ: MAB_0810c
>MAB_0810c(pdxQ) Score=9 Pos=-46 [Mycobacterium abscessus ATCC 19977]
AGCGCTACTAT---------------ATGGTAGCAGT
>MAB_0811(PF00892) Score=9 Pos=-40 [Mycobacterium abscessus ATCC 19977]
ACTGCTACCAT---------------ATAGTAGCGCT
# TF - PdxQ3: MAB_3582
>MAB_3581c(COG2050) Score=11.5 Pos=-55 [Mycobacterium abscessus ATCC 19977]
ATTGTAAT-(1)-AGGACAAT-(6)-ATTGCACT
# TF - PdxR2: MAB_1353c
>MAB_1356(pdxO) Score=12.6 Pos=-68 [Mycobacterium abscessus ATCC 19977]
ACTGGACTGG-(14)-TGTGGTCTGT-(25)-ATGTGTCACA
# TF - PaaR: MAB_0901c
>MAB_0902(paaJ) Score=4.7 Pos=-48 [Mycobacterium abscessus ATCC 19977]
GACAACCGACCGAACGATCGGT
>MAB_0902(paaJ) Score=6.2 Pos=-44 [Mycobacterium abscessus ATCC 19977]
ACCGACCGAACGATCGGTTATT
>MAB_0901c(paaR) Score=6.2 Pos=-92 [Mycobacterium abscessus ATCC 19977]
AATAACCGATCGTTCGGTCGGT
>MAB_0901c(paaR) Score=4.7 Pos=-88 [Mycobacterium abscessus ATCC 19977]
ACCGATCGTTCGGTCGGTTGTC
>MAB_0906(paaA) Score=6.1 Pos=-37 [Mycobacterium abscessus ATCC 19977]
AATAACCGAACATTCGGTCGGT
>MAB_0906(paaA) Score=4.5 Pos=-33 [Mycobacterium abscessus ATCC 19977]
ACCGAACATTCGGTCGGTAATC
>MAB_0900c(paaZ) Score=4.9 Pos=-108 [Mycobacterium abscessus ATCC 19977]
ACTGACCGTTCGGTCGGCCACA
>MAB_0900c(paaZ) Score=5.4 Pos=-35 [Mycobacterium abscessus ATCC 19977]
ACCGAACGAATGGACGGTTGGT
# TF - AmtR: MAB_4089c
>MAB_4090(uctT) Score=5.9 Pos=-101 [Mycobacterium abscessus ATCC 19977]
TTTACCTATCGCCTGACAGATATT
>MAB_4089c(amtR) Score=5.9 Pos=-183 [Mycobacterium abscessus ATCC 19977]
AATATCTGTCAGGCGATAGGTAAA
# TF - ArsR: MAB_4862
>MAB_2566(PF00903) Score=4.6 Pos=-83 [Mycobacterium abscessus ATCC 19977]
GTTTGACATATGTCAAAG
>MAB_4862(arsR) Score=4.9 Pos=-9 [Mycobacterium abscessus ATCC 19977]
TATCGATGTATGTCGAAT
# TF - AcnR: MAB_2731
>MAB_4095c(aceA) Score=5.3 Pos=-259 [Mycobacterium abscessus ATCC 19977]
CAGTACGAGCGTTCTG
>MAB_2730(acnA) Score=5.4 Pos=-44 [Mycobacterium abscessus ATCC 19977]
CGGGACAAGCGTACTG
# TF - MntR: MAB_3110
>MAB_1031c(mntH) Score=5.4 Pos=-53 [Mycobacterium abscessus ATCC 19977]
AGTTTCGGCTACTCTAACTT
# TF - BioQ: MAB_2685
>MAB_2684c(bioB) Score=5.7 Pos=-54 [Mycobacterium abscessus ATCC 19977]
CCTGAACACCGTTCAGG
>MAB_2685(bioQ) Score=6.2 Pos=-24 [Mycobacterium abscessus ATCC 19977]
CCTGAACGGTGTTCAGG
>MAB_2687c(bioF) Score=6.2 Pos=-24 [Mycobacterium abscessus ATCC 19977]
CCTGAACACCGTTCAGG
# TF - LtbR: MAB_3295
>MAB_3294c(leuC) Score=4.6 Pos=-39 [Mycobacterium abscessus ATCC 19977]
CGTTCCAAATATTGAGACG
>MAB_3295(ltbR) Score=4.3 Pos=-11 [Mycobacterium abscessus ATCC 19977]
AGTATCGTTACGTGAGACA
>MAB_3294c(leuC) Score=4.3 Pos=-60 [Mycobacterium abscessus ATCC 19977]
TGTCTCACGTAACGATACT
>MAB_3295(ltbR) Score=4.6 Pos=-32 [Mycobacterium abscessus ATCC 19977]
CGTCTCAATATTTGGAACG
# TF - HspR: MAB_4270c
>MAB_4402(hsp) Score=4.9 Pos=-74 [Mycobacterium abscessus ATCC 19977]
TTAAGCGCACGGCACTCAA
>MAB_4265c(clpB) Score=5.6 Pos=-73 [Mycobacterium abscessus ATCC 19977]
TTGAGCGGAACAGACTCAA
>MAB_4273c(dnaK) Score=5.2 Pos=-105 [Mycobacterium abscessus ATCC 19977]
TTGAGTCACATTGACTCAA
>MAB_4273c(dnaK) Score=5.2 Pos=-51 [Mycobacterium abscessus ATCC 19977]
TTGAGCGGATCTCACTGAA
# TF - Mce2R: MAB_3018
>MAB_3018(mce2R) Score=5.9 Pos=-52 [Mycobacterium abscessus ATCC 19977]
TAAATTGGTCAGACCACTAGA