# TF - LiuR: RALTA_A0108
>RALTA_A0218(mcm) Score=6.1 Pos=-136 [Cupriavidus taiwanensis]
ATTTACGTTAACGTCAAC
>RALTA_A0558(paaH) Score=6.1 Pos=-44 [Cupriavidus taiwanensis]
CTTAACGTTTACGTAAAC
>RALTA_A0558(paaH) Score=5.3 Pos=-38 [Cupriavidus taiwanensis]
GTTTACGTAAACGGAAAC
>RALTA_A0109(paaI) Score=5.5 Pos=-84 [Cupriavidus taiwanensis]
GTTTACGTAAACGTAAAT
>RALTA_A0109(paaI) Score=6.6 Pos=-90 [Cupriavidus taiwanensis]
ATTGACGTTTACGTAAAC
>RALTA_A0218(mcm) Score=4.2 Pos=-130 [Cupriavidus taiwanensis]
GTTAACGTCAACGTCATA
>RALTA_A0107 Score=6.2 Pos=-132 [Cupriavidus taiwanensis]
GTTGACGTTTACGTTAGC
>RALTA_A0107 Score=5.5 Pos=-126 [Cupriavidus taiwanensis]
GTTTACGTTAGCGTCAAC
>RALTA_A0108(liuR) Score=5.1 Pos=-92 [Cupriavidus taiwanensis]
GCTAACGTAAACGTCAAC
>RALTA_A0108(liuR) Score=6.4 Pos=-98 [Cupriavidus taiwanensis]
GTTGACGCTAACGTAAAC
# TF - IscR: RALTA_A1138
>RALTA_A1138(iscR) Score=6.9 Pos=-92 [Cupriavidus taiwanensis]
GTAGTTGACTGAATTAGTCGGGTAC
>RALTA_A1138(iscR) Score=6.8 Pos=-63 [Cupriavidus taiwanensis]
ATACTTGACGGAAACGATCAAGTAT
# TF - NrdR: RALTA_A2323
>RALTA_A2686(nrdA) Score=4.8 Pos=-251 [Cupriavidus taiwanensis]
CCACTACATCTAGTAG
# TF - PsrA: RALTA_A3194
>RALTA_A2072(fabH) Score=2.5 Pos=-201 [Cupriavidus taiwanensis]
CATCAAACGCGGGTATGATG
>RALTA_A3194(psrA) Score=4 Pos=-105 [Cupriavidus taiwanensis]
CTTCGTACAGCTGTTTCAAG
# TF - FadP: RALTA_A0402
>RALTA_A0402(fadP) Score=4.9 Pos=-141 [Cupriavidus taiwanensis]
CTGAACGACCGTTCTT
>RALTA_A0795(etfB) Score=5.5 Pos=-98 [Cupriavidus taiwanensis]
TAGTACGATCGTTCGA
>RALTA_A1245(etfD) Score=5.1 Pos=-288 [Cupriavidus taiwanensis]
AAGAACGACCGTTCCA
>RALTA_A2284(fadD2) Score=5.4 Pos=-73 [Cupriavidus taiwanensis]
TAGAACGATCGTTCGG
>RALTA_A1480(RSc1772) Score=5.3 Pos=-97 [Cupriavidus taiwanensis]
TCGAACGATCGTTCAC
>RALTA_A1467(fadB) Score=5.5 Pos=-218 [Cupriavidus taiwanensis]
TTGAACGACCGTGCTA
>RALTA_A1174(acsA) Score=5.5 Pos=-95 [Cupriavidus taiwanensis]
TAGAACGATCGTTCGC
>RALTA_A0233(nppD) Score=5.2 Pos=-58 [Cupriavidus taiwanensis]
TCGAACGACCGTTCAC
>RALTA_A0108(liuR) Score=4.9 Pos=-32 [Cupriavidus taiwanensis]
ACGAACGACCGTTCAC
>RALTA_A0160(Rmet_0145) Score=5.5 Pos=-43 [Cupriavidus taiwanensis]
GCGAACGATCGTTCTA
>RALTA_A1087(paaH1) Score=4.9 Pos=-31 [Cupriavidus taiwanensis]
ACGTACGATCGTGCTA
>RALTA_A2744(fadD1) Score=4.7 Pos=-35 [Cupriavidus taiwanensis]
TCGAACGACCATTCAG
>RALTA_A1050(RSc2046) Score=5.4 Pos=-87 [Cupriavidus taiwanensis]
ACGAACGGTCGTTCTA
>RALTA_A1050(RSc2046) Score=5.2 Pos=-64 [Cupriavidus taiwanensis]
TAGCACGACCGTTCAC
>RALTA_A1359(bktB) Score=4.6 Pos=-72 [Cupriavidus taiwanensis]
AAGTACGACCGTTCAC
>RALTA_A1460(alkK) Score=4.6 Pos=-73 [Cupriavidus taiwanensis]
GCGAACGACCGTCCAA
>RALTA_A1460(alkK) Score=4.4 Pos=-54 [Cupriavidus taiwanensis]
TAGTACGGTTGTTCGT
# TF - LexA: RALTA_A1825
>RALTA_B0872(imuA) Score=6.3 Pos=-72 [Cupriavidus taiwanensis]
TACTGTATAAATATACAGTT
>RALTA_A0499(recA) Score=6.1 Pos=-159 [Cupriavidus taiwanensis]
TACTGTTTTTTTATACAGTA
>RALTA_A1825(lexA) Score=6 Pos=-98 [Cupriavidus taiwanensis]
TACTGTTTAAACATACAGTG
>RALTA_A1825(lexA) Score=5.4 Pos=-118 [Cupriavidus taiwanensis]
TACTGTATAAAATCACAGCA
>RALTA_A0247(uvrD) Score=5.6 Pos=-62 [Cupriavidus taiwanensis]
GGCTGTATGGATATACAGTT
>RALTA_A1272(H16_A1352) Score=5.9 Pos=-33 [Cupriavidus taiwanensis]
TACTGTACATCCATACAGTA
>RALTA_B1170(PF06733) Score=6.2 Pos=-88 [Cupriavidus taiwanensis]
TACTGTATATTTGTACAGTT
>RALTA_A3210(dinD) Score=6.3 Pos=-68 [Cupriavidus taiwanensis]
CACTGTATATTCATACAGTA
>RALTA_B0767(BPSS1334) Score=5.1 Pos=-48 [Cupriavidus taiwanensis]
ACCTGTATGGATGAACAGTG
>RALTA_B0767(BPSS1334) Score=6.4 Pos=-67 [Cupriavidus taiwanensis]
TACTGTATATATTTACAGTA
>pRALTA_0101(imuA) Score=6.3 Pos=-41 [Cupriavidus taiwanensis]
AACTGTATAAATATACAGTA
>RALTA_B1379(uvrA) Score=5.7 Pos=-71 [Cupriavidus taiwanensis]
GACTGTATGGATGTACAGTG
>RALTA_B2284(H16_B2553) Score=6 Pos=-42 [Cupriavidus taiwanensis]
GACTGTATATTCGTACAGTA
# TF - Fur: RALTA_B0107, RALTA_A2618
>RALTA_B0125 Score=5.2 Pos=-157 [Cupriavidus taiwanensis]
AATGCGAATTGTTATCATT
>RALTA_B2199 Score=5 Pos=-67 [Cupriavidus taiwanensis]
AATGCGAATTATTCGCATT
>RALTA_B1494(fhuA3) Score=5.3 Pos=-57 [Cupriavidus taiwanensis]
AACAAGAATTATTCTCATT
>RALTA_A0266(bfd) Score=5.2 Pos=-56 [Cupriavidus taiwanensis]
AATGGGAATTGTTATCATT
>RALTA_B0077(feoA) Score=5.2 Pos=-83 [Cupriavidus taiwanensis]
AATGAAAACGATTTTCATT
>RALTA_A2036(tonB) Score=5.3 Pos=-206 [Cupriavidus taiwanensis]
AATAAGAATCATTATCGTT
>RALTA_B1811 Score=5 Pos=-153 [Cupriavidus taiwanensis]
TATGAGAATGATTGTTATT
>RALTA_A2655 Score=4.7 Pos=-92 [Cupriavidus taiwanensis]
AATAGGAATAATTCGCAAT
>RALTA_A0777 Score=5.6 Pos=-84 [Cupriavidus taiwanensis]
ATTGAGAATCATTATCATT
>RALTA_A2040 Score=5.6 Pos=-108 [Cupriavidus taiwanensis]
AATGATAACAATTCTCATT
>RALTA_B0897(aleB) Score=5.1 Pos=-70 [Cupriavidus taiwanensis]
ATCGAGAATCATTATCATT
>RALTA_A1364 Score=5.4 Pos=-330 [Cupriavidus taiwanensis]
AATGCGAATCATTATTATT
>RALTA_A1365 Score=5.4 Pos=-46 [Cupriavidus taiwanensis]
AATGCGAATCATTATTATT
>RALTA_B1229(fhuA2) Score=4.8 Pos=-62 [Cupriavidus taiwanensis]
AATGACAATGATTTGCATT
>RALTA_B0923(fhuA1) Score=4.2 Pos=-84 [Cupriavidus taiwanensis]
ATCACGAATCATTCCTATT
>RALTA_B2301 Score=4.2 Pos=-101 [Cupriavidus taiwanensis]
TTTGAGAATCACTCGCATT
# TF - LiuQ: RALTA_A1547
>RALTA_A1548 Score=4.6 Pos=-215 [Cupriavidus taiwanensis]
TTGAGTCAACCTCAA
>RALTA_A1548 Score=4.8 Pos=-50 [Cupriavidus taiwanensis]
TTGAGTTGTGCTCAA
# TF - Zur: RALTA_A0139
>RALTA_A0136(yciC) Score=5.9 Pos=-76 [Cupriavidus taiwanensis]
AATTCGCAACCTTGTTGCAACAG
>RALTA_A2241(zip) Score=6.4 Pos=-35 [Cupriavidus taiwanensis]
TTATTGCAACATTGTTGCGTTTG
# TF - ModE: RALTA_A0628
>RALTA_A0633(modA) Score=4.7 Pos=-97 [Cupriavidus taiwanensis]
CGCGCTATATACAGACGTATATTGCGCC
# TF - NorR: RALTA_B2089
>RALTA_B2088(norA) Score=4.4 Pos=-136 [Cupriavidus taiwanensis]
AAGGGTAATTAGTACCGCG
>RALTA_B2088(norA) Score=4.4 Pos=-155 [Cupriavidus taiwanensis]
CATGGTGAAAAAAACCTCA
>RALTA_B2089(norR) Score=4.4 Pos=-35 [Cupriavidus taiwanensis]
CGCGGTACTAATTACCCTT
>RALTA_B2089(norR) Score=4.9 Pos=-61 [Cupriavidus taiwanensis]
AAGGGTATTAACTACCCTA
>RALTA_B2088(norA) Score=4.9 Pos=-110 [Cupriavidus taiwanensis]
TAGGGTAGTTAATACCCTT
# TF - Dnr
>RALTA_B2049(nirS) Score=4.5 Pos=-123 [Cupriavidus taiwanensis]
GTTTGATGACAGTCAATC
# TF - HexR: RALTA_A1157
>RALTA_A1158(edd) Score=5.2 Pos=-223 [Cupriavidus taiwanensis]
ATGTAGAGATTCTACAT
>RALTA_A1158(edd) Score=4.9 Pos=-71 [Cupriavidus taiwanensis]
CTGTAGAAAATCTACAG
>RALTA_A1157(hexR) Score=4.9 Pos=-201 [Cupriavidus taiwanensis]
CTGTAGATTTTCTACAG
>RALTA_A1157(hexR) Score=5.2 Pos=-49 [Cupriavidus taiwanensis]
ATGTAGAATCTCTACAT
# TF - SdhR: RALTA_A2132
>RALTA_B0366(acnB) Score=5.8 Pos=-22 [Cupriavidus taiwanensis]
TCTTATATAAGATATAAGACATTTGA
>RALTA_B0366(acnB) Score=6.2 Pos=-29 [Cupriavidus taiwanensis]
GATGAACTCTTATATAAGATATAAGA
>RALTA_A1766(aceA) Score=5.4 Pos=-132 [Cupriavidus taiwanensis]
TCTACACTCTTATATAAGACACAGGA
>RALTA_A2531(icd) Score=6.3 Pos=-168 [Cupriavidus taiwanensis]
TCTTGTGTCTTATATAAGACTGAATC
>RALTA_B0267(aceA2) Score=7.5 Pos=-132 [Cupriavidus taiwanensis]
TCTTATGTCTTATATAAGACATAACC
>RALTA_A2133(mdh) Score=7.9 Pos=-360 [Cupriavidus taiwanensis]
TCTTATGTCTTATATAAGACATATGA
>RALTA_A2132(sdhR) Score=7.9 Pos=-254 [Cupriavidus taiwanensis]
TCATATGTCTTATATAAGACATAAGA
# RNA - FMN
>RALTA_B1130(ribB) Score=98.7 Pos=-326 [Cupriavidus taiwanensis]
TACGTCTTCAGGGCGGGGTGAAAGTCCCCACCGGCGGTATGCCGCGACGCGCAGCGCGCGTCCGGCGAGCCCGCGAGCGCTCGCATTCCCGTGCGAGGTCAGCAGACCTGGTGAGAGGCCAGGGCCGACGGTCATAGTCCGGATGAAAGAAGATGAACGG
# RNA - TPP
>RALTA_A0179(thiC) Score=66.4 Pos=-201 [Cupriavidus taiwanensis]
GGATGAAACAGGGGTGCCGTACGGATGGGCCGTGCGGCTGAGAGAGTCCCTTCGAACCCGATCCGGTTAGTACCGGCGTGGGAAGTTTCAGCAAGACCAAGCC
# RNA - Cobalamin
>RALTA_A2446(btuB) Score=27 Pos=-163 [Cupriavidus taiwanensis]
GACCGGCCACACGCCACTGAACCGCAGGTTCGGGAAGGCGCCGGTT
# TF - NsrR: RALTA_A2987
>RALTA_A2987(nsrR) Score=5.5 Pos=-40 [Cupriavidus taiwanensis]
CTTGCATCCTAGATGCATC
>RALTA_A2986(hmp) Score=4.6 Pos=-40 [Cupriavidus taiwanensis]
CATGCATATTTTCTGCATG
# TF - LldR: RALTA_B0086
>RALTA_B0086(lldR) Score=6.2 Pos=-59 [Cupriavidus taiwanensis]
AATTGGTCGGACCAATT
>RALTA_B0085(lldE) Score=6.3 Pos=-83 [Cupriavidus taiwanensis]
AATTGGTCCGACCAATT
# TF - NtrC: RALTA_A1877
>RALTA_A2753(dppA) Score=4.6 Pos=-93 [Cupriavidus taiwanensis]
CGCACCAAAAAGCAGCG
>RALTA_B1139(amtB) Score=4.9 Pos=-187 [Cupriavidus taiwanensis]
CGCGCCATTTTGGCGCA
>RALTA_A1880(glnA) Score=4.8 Pos=-334 [Cupriavidus taiwanensis]
CGCACTAATGCGGTGCG
>RALTA_A1880(glnA) Score=4.7 Pos=-304 [Cupriavidus taiwanensis]
TGCACCATGATGGTGTT
>RALTA_A1879(ntrZ) Score=4.5 Pos=-190 [Cupriavidus taiwanensis]
TGCACCACAAGGGGGCG
# RNA - Glycine
>RALTA_A3074(gcvT) Score=49.6 Pos=-328 [Cupriavidus taiwanensis]
GCATCCGACCGGGAGAGCGCGCATCGCCTGCGCCGCCGAAGGGGTATCACCCGAAAACTCTCAGGCACCACGGACCGGTCGGATCGGCA
>RALTA_A3074(gcvT) Score=38.3 Pos=-219 [Cupriavidus taiwanensis]
TGCCGCACTCTGGAGAGCGGCACCCGCCATTCGTGGCGAGCGTGCCCACCGAAGGGGCGCGCGAGGACTGGAATCCGCAGGATCCGCCTCGTAATCTCTCAGGTATCGAGGACAGAGGGGTCATCCG
>RALTA_B0324(dadA) Score=32.2 Pos=-178 [Cupriavidus taiwanensis]
GTCAGTGCACTCTGAAGAATGCCGGACGCCATCGTCCGCCCGGCATACCGAAGGAGCAAGCGCGCCCCGCCCCCGCGGCAAGGCGCCGCGAATCTCTCAGGTCCAGAACAGAGGGGGCGTC
>RALTA_B0324(dadA) Score=44.9 Pos=-277 [Cupriavidus taiwanensis]
CAGCGTGATGCAGGGAGAGACTGTCGCGGCGCCCGCCGCGCACGGCGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCAAAAGGACCGGCATCACCCG
# RNA - SAH_riboswitch
>RALTA_A0188(ahcY) Score=61.2 Pos=-211 [Cupriavidus taiwanensis]
ACTCCGAGGAGCGTTGCAACGGATGCGGTAGGCAGTTCAGTGCCACCCCATGCATCCGCCAGGCTCGGACTGTCTCAACGGCGCTCGCTGATCCG
# RNA - yybP-ykoY
>RALTA_A2193(ykoY) Score=72.5 Pos=-230 [Cupriavidus taiwanensis]
TGTCCCTCAAAGGGGAGTAGCTCCGGGGCCGATGCCCTTAGCACAATCGTCATTCCGGGACAGCAGTCCCCGGTTGTGCTGACTACCGGCGCGCATACCGCGCCAGTGGTCGAGCAAGACCTTTGCAACCTGGAC
# RNA - mini-ykkC
>RALTA_B1859(ykkC) Score=29.4 Pos=-70 [Cupriavidus taiwanensis]
TTCGAGGACGACCTCGCCCGCCGTGGGTATGAATGTCCGGGACGGCCCGGCT
# RNA - sucA
>RALTA_A1870(sucA) Score=79.3 Pos=-88 [Cupriavidus taiwanensis]
TTTGCGATCCGCTAACCGGTCAAGCCGTGTCGCGGAAGGTTGAATAACCCGCTGAACTCCGGCAGACCCGGAGAAAAGTGAGCG
# TF - RutR: RALTA_B1431
>RALTA_B1434(ribA2) Score=7.1 Pos=-43 [Cupriavidus taiwanensis]
ACCTGACCGATTGGTCAGGA
# TF - PhnF: RALTA_B1192
>RALTA_B1191(phnG) Score=7 Pos=-23 [Cupriavidus taiwanensis]
TCTAAACGTATAGACGTATAGG
>RALTA_B1192(phnF) Score=7 Pos=-174 [Cupriavidus taiwanensis]
CCTATACGTCTATACGTTTAGA
# TF - PaaR: RALTA_A2979
>RALTA_A0085(paaG) Score=6.6 Pos=-31 [Cupriavidus taiwanensis]
ATTAACCGACCGATCGGTTGGT
>RALTA_A2973(paaA) Score=6.2 Pos=-83 [Cupriavidus taiwanensis]
ATTGACCGACCGGTCGGCTTAT
>RALTA_A2763(paaF) Score=5.7 Pos=-89 [Cupriavidus taiwanensis]
GCCGACCGACTGGTCGGTTTAT
# TF - HrcA: RALTA_A1113
>RALTA_A0685(groS) Score=7.7 Pos=-121 [Cupriavidus taiwanensis]
TTAGCACTCGTCAGGGGGGAGTGCTAA
>RALTA_A0299(rpoH) Score=7.7 Pos=-108 [Cupriavidus taiwanensis]
TTAGCACTCACCCGGCCAGAGTGCTAA
# TF - SoxR: RALTA_B2083
>RALTA_B2082(PF01042) Score=6.3 Pos=-151 [Cupriavidus taiwanensis]
ACCTTAACCTAACTTGAGGT
# TF - CueR: RALTA_A3122
>RALTA_A3125(copZ) Score=5.3 Pos=-80 [Cupriavidus taiwanensis]
CGCTTCCCATGGTGGCAAGGT
>RALTA_A3123(copA) Score=6 Pos=-60 [Cupriavidus taiwanensis]
ACCTTCCAATGATGGTAAGGT
# TF - CadR-PbrR: RALTA_A3062
>RALTA_A3062(cadR) Score=6.1 Pos=-39 [Cupriavidus taiwanensis]
ACCCTGTAGTCGTTACAGGGT
>RALTA_B1454(cadA) Score=6.4 Pos=-61 [Cupriavidus taiwanensis]
ACTCTGTAGCCACTACAGGGT
# TF - HpxR: RALTA_B0723
>RALTA_B0719(uraA) Score=6.9 Pos=-203 [Cupriavidus taiwanensis]
TTACCAAAACGTTTTTGTTA
# TF - RSc1790: RALTA_A1435
>RALTA_A1435(RSc1790) Score=6.6 Pos=-74 [Cupriavidus taiwanensis]
GAATGAAAACGTTTTCATTT
# TF - HutC: RALTA_A2493, RALTA_A0655
>RALTA_A2496(hisX) Score=5.7 Pos=-247 [Cupriavidus taiwanensis]
GATCCTGTCTATACAGCAAC
>RALTA_A2496(hisX) Score=5.4 Pos=-93 [Cupriavidus taiwanensis]
TGACTTGTATATACAGGCAT
>RALTA_A2492(hutH) Score=5.6 Pos=-26 [Cupriavidus taiwanensis]
TAAGCTGTATAGACAGGAAC
>RALTA_A0654(hutU) Score=5.6 Pos=-83 [Cupriavidus taiwanensis]
GCACTTGTATATACAGGAAT
# TF - PhnR2: RALTA_B1650
>RALTA_B1650(phnR2) Score=5.2 Pos=-83 [Cupriavidus taiwanensis]
ATTGTTGACAAT
>RALTA_B1651(phnS) Score=5.2 Pos=-175 [Cupriavidus taiwanensis]
ATTGTCAACAAT
# TF - SdaR: RALTA_A1241
>RALTA_A1241(sdaR) Score=5.9 Pos=-32 [Cupriavidus taiwanensis]
AAGCTGTCAGACAGCCT
# TF - H16_B2241: RALTA_B2018
>RALTA_B2018(H16_B2241) Score=5.4 Pos=-49 [Cupriavidus taiwanensis]
ACTTGTCATAACACGC
# TF - UraR: RALTA_A0992
>RALTA_B2201(COG1953) Score=4.7 Pos=-112 [Cupriavidus taiwanensis]
TTTGTAGACAAT
>RALTA_B2201(COG1953) Score=4.5 Pos=-167 [Cupriavidus taiwanensis]
AATGTTGACAAT
>RALTA_A0993(pucM) Score=5.2 Pos=-202 [Cupriavidus taiwanensis]
ATTGTCAACAAA
>RALTA_A0993(pucM) Score=5.2 Pos=-234 [Cupriavidus taiwanensis]
ATTGTTGACAAT
>RALTA_A0992(uraR) Score=5.2 Pos=-108 [Cupriavidus taiwanensis]
TTTGTTGACAAT
>RALTA_A0992(uraR) Score=5.2 Pos=-76 [Cupriavidus taiwanensis]
ATTGTCAACAAT
>RALTA_A1283(atzB) Score=4 Pos=-117 [Cupriavidus taiwanensis]
TTTGTGGACAGT
# TF - MetR: RALTA_B1419
>RALTA_B1419(metR) Score=5.9 Pos=-51 [Cupriavidus taiwanensis]
TATGAATCAATTTCATA
>RALTA_B1420(metE) Score=5.9 Pos=-96 [Cupriavidus taiwanensis]
TATGAAATTGATTCATA
# TF - TauR: RALTA_B1590
>RALTA_B1591(tauX) Score=9.5 Pos=-114 [Cupriavidus taiwanensis]
CTGGCCCAAG-------------CTGGCGCTAC
>RALTA_B1998(tauC2) Score=7.4 Pos=-57 [Cupriavidus taiwanensis]
CTGGCCGAAG-------------CTGGCGCAAG
>RALTA_A1247(tauM) Score=6.6 Pos=-43 [Cupriavidus taiwanensis]
GTGGCCGCAT-------------CTGGACCGGA
>RALTA_B0795(tauA) Score=8.6 Pos=-102 [Cupriavidus taiwanensis]
CTGGCCCCAC-------------CTGGTCCTAT
# TF - GabR: RALTA_A1416
>RALTA_A1417(argE) Score=9 Pos=-172 [Cupriavidus taiwanensis]
AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA
# TF - FdsR: RALTA_A0596
>RALTA_A0597(fdsG) Score=5.6 Pos=-163 [Cupriavidus taiwanensis]
ATATGTAGAAAATAGCTTAT
>RALTA_A0597(fdsG) Score=5.7 Pos=-77 [Cupriavidus taiwanensis]
ATAGGAAAAAAATAGCATAT
>RALTA_A0596(fdsR) Score=5.7 Pos=-104 [Cupriavidus taiwanensis]
ATATGCTATTTTTTTCCTAT
>RALTA_A0596(fdsR) Score=5.6 Pos=-18 [Cupriavidus taiwanensis]
ATAAGCTATTTTCTACATAT
# TF - ModE3: RALTA_A1004
>RALTA_A1003(tupB) Score=5.6 Pos=-31 [Cupriavidus taiwanensis]
TTATGTCTGCAAGAACATAA
>RALTA_A1004(modE3) Score=5.6 Pos=-128 [Cupriavidus taiwanensis]
TTATGTTCTTGCAGACATAA
# TF - H16_A0963: RALTA_A0957
>RALTA_A0958(PF02627) Score=12.6 Pos=-142 [Cupriavidus taiwanensis]
ATTGGTCTA-(15)-ATTGGCAGT-(4)-GGGGCCAAT
# TF - OapR: RALTA_A0211
>RALTA_A0212(oapT) Score=14.2 Pos=-156 [Cupriavidus taiwanensis]
GCCTGTACGGTC-(11)-AACTGTACGGTA-(15)-GACTGTATATTT
# TF - H16_A2655: RALTA_A2147
>RALTA_A2148(h16_A2656) Score=15.5 Pos=-72 [Cupriavidus taiwanensis]
CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG
>RALTA_A2694(PF01810) Score=13.8 Pos=-101 [Cupriavidus taiwanensis]
GACCTGTATCG-(13)-AAAGTGTACCG-(0)-GTACTGTACCG
# TF - YdcR: RALTA_A1516
>RALTA_A1517(h16_A1590) Score=8.6 Pos=-107 [Cupriavidus taiwanensis]
AACTGATACGTAATT---------ATCTGATGCTGGTAT
>RALTA_B1080(PF01654) Score=9.1 Pos=-308 [Cupriavidus taiwanensis]
ATCTGATACGGTGTT---------ATTTGATTCTGTTCC
>pRALTA_0449(COG2124) Score=7.6 Pos=-211 [Cupriavidus taiwanensis]
ATCTGTCGCGGTAAG---------ATCTGATGCCGGTTA
# TF - Rmet_5631: RALTA_B0768, RALTA_B1072, RALTA_B1543
>RALTA_B1072(Rmet_5631) Score=3.8 Pos=-7 [Cupriavidus taiwanensis]
GAATTGAATGCAAAGC
>RALTA_B1072(Rmet_5631) Score=5.4 Pos=-164 [Cupriavidus taiwanensis]
GTTTTGAATGCAAAAT
>RALTA_B1072(Rmet_5631) Score=4.3 Pos=-34 [Cupriavidus taiwanensis]
AAATTGAATTCAATCT
>RALTA_B0770(sgaA) Score=5.5 Pos=-178 [Cupriavidus taiwanensis]
TTTTTGCATTCAATAT
>RALTA_B0770(sgaA) Score=4.9 Pos=-45 [Cupriavidus taiwanensis]
CGATTGCATTCAAAAT
>RALTA_B0768(Rmet_5631) Score=4.9 Pos=-140 [Cupriavidus taiwanensis]
ATTTTGAATGCAATCG
>RALTA_B0768(Rmet_5631) Score=5.5 Pos=-7 [Cupriavidus taiwanensis]
ATATTGAATGCAAAAA
>RALTA_B1073(sgaA) Score=3.8 Pos=-190 [Cupriavidus taiwanensis]
GCTTTGCATTCAATTC
>RALTA_B1073(sgaA) Score=4.3 Pos=-163 [Cupriavidus taiwanensis]
AGATTGAATTCAATTT
>RALTA_B1073(sgaA) Score=5.4 Pos=-33 [Cupriavidus taiwanensis]
ATTTTGCATTCAAAAC
>RALTA_B1543(Rmet_5631) Score=4.3 Pos=-7 [Cupriavidus taiwanensis]
ACATTGCATGCAACCT
>RALTA_B0771(dld2) Score=4.2 Pos=-12 [Cupriavidus taiwanensis]
TTCTTGCATGCCATGA
# TF - PdxQ: RALTA_B0828
>RALTA_B0827(pdxO2) Score=14.8 Pos=-93 [Cupriavidus taiwanensis]
AACTGGCCCAT-(13)-AACTGGACCTT-(4)-TTGTGCCAGTT
# TF - H16_B1468: RALTA_B1733
>RALTA_B1725(cydA) Score=6.5 Pos=-123 [Cupriavidus taiwanensis]
AACTGAGCTTGCCCA----------AACTGTATCCCTGCC
>RALTA_B1731(moaA) Score=6.5 Pos=-130 [Cupriavidus taiwanensis]
AACTGTTCTGCTTGC----------CTTTGTACGCCTGCG
>RALTA_B1736(fdhA2) Score=8.3 Pos=-147 [Cupriavidus taiwanensis]
CACTGTACTCCCTGC----------ATTTGTACACACCGG
# TF - H16_A0970: RALTA_A0963
>RALTA_A0964 Score=19.9 Pos=-142 [Cupriavidus taiwanensis]
ACAGATACAGAGGC-(11)-ATCGTAACAGGCGG-(8)-GTTGCTGTTCCGGT-(11)-GGCCGTGTGCCTGC
>RALTA_A0965(h16_A0972) Score=19.9 Pos=-581 [Cupriavidus taiwanensis]
ACAGATACAGAGGC-(11)-ATCGTAACAGGCGG-(8)-GTTGCTGTTCCGGT-(11)-GGCCGTGTGCCTGC
# TF - RALTA_A0216: RALTA_A0216
>RALTA_A0217(PF11142) Score=20 Pos=-168 [Cupriavidus taiwanensis]
AACTGTCAGG-(8)-CTGAACAGTC-(7)-AACTGTTCAC-(0)-AACTGTACAT
# TF - UxuR3: RALTA_A1565
>RALTA_A1565(uxuR3) Score=4.5 Pos=-245 [Cupriavidus taiwanensis]
TATCTGGTTCACCAATTA
>RALTA_A1563(uxuA) Score=4.5 Pos=-136 [Cupriavidus taiwanensis]
TAATTGGTGAACCAGATA
# TF - MlnR: RALTA_A2456
>RALTA_A2456(mlnR) Score=6.7 Pos=-71 [Cupriavidus taiwanensis]
TAATTCATAATTATGAATTA
# TF - GguR: RALTA_B0132
>RALTA_B0133(gudD) Score=4.9 Pos=-109 [Cupriavidus taiwanensis]
CAGTCATACGATGACAG
>RALTA_B0782(garD) Score=4.9 Pos=-155 [Cupriavidus taiwanensis]
ATGTTGTCGTACAACAC
>RALTA_B0782(garD) Score=5 Pos=-54 [Cupriavidus taiwanensis]
ATGTTGTCAGACAACGT
>RALTA_B0137(kdgD) Score=4.9 Pos=-94 [Cupriavidus taiwanensis]
TTGTCGTACGATGACTG
>RALTA_B0132(gguR) Score=4.9 Pos=-91 [Cupriavidus taiwanensis]
CTGTCATCGTATGACTG