# TF - XylR: LAF_0400
>LAF_0402(xylA) Score=5.1 Pos=-53 [Lactobacillus fermentum IFO 3956]
GTTAGTTGTTTTAAAAAACCAAT
>LAF_0405(xynB2) Score=5.5 Pos=-121 [Lactobacillus fermentum IFO 3956]
GTTTGTTTACTAAATAAACTAAC
>LAF_0401(xylT) Score=5.2 Pos=-90 [Lactobacillus fermentum IFO 3956]
GTTAGTTTTTATCAGCAACTAAC
# TF - CcpA: LAF_0539
>LAF_0998(mmgB) Score=5.4 Pos=-65 [Lactobacillus fermentum IFO 3956]
TTGAAAACGTTTTCAT
>LAF_1738(rbsK) Score=4.5 Pos=-103 [Lactobacillus fermentum IFO 3956]
TTGCAACCGCTTTCCT
>LAF_1738(rbsK) Score=4.3 Pos=-158 [Lactobacillus fermentum IFO 3956]
TAGCAAACGCTTGCAT
>LAF_1686(pgi) Score=4.4 Pos=-63 [Lactobacillus fermentum IFO 3956]
GAGTTAGCGCTTTCAT
>LAF_0411(pgi) Score=4.2 Pos=-66 [Lactobacillus fermentum IFO 3956]
ATGGAAACGTTATCGT
>LAF_0402(xylA) Score=4.3 Pos=-217 [Lactobacillus fermentum IFO 3956]
TGGGAAGCGGTTTCTA
>LAF_0780(lacZ) Score=4.2 Pos=-92 [Lactobacillus fermentum IFO 3956]
TCGTAATCGGTTTCAT
>LAF_1823(argR) Score=4.8 Pos=-119 [Lactobacillus fermentum IFO 3956]
ATGAAACCGGTTTAAA
>LAF_1738(rbsK) Score=4.3 Pos=-158 [Lactobacillus fermentum IFO 3956]
TAGCAAACGCTTGCAT
>LAF_1738(rbsK) Score=4.5 Pos=-103 [Lactobacillus fermentum IFO 3956]
TTGCAACCGCTTTCCT
>LAF_0739(nplT) Score=4.6 Pos=-96 [Lactobacillus fermentum IFO 3956]
GTGAAAACGGTTACTT
>LAF_1140(pdhA) Score=4.5 Pos=-169 [Lactobacillus fermentum IFO 3956]
ATGTAAGCGGTAACTT
>LAF_1140(pdhA) Score=4.2 Pos=-244 [Lactobacillus fermentum IFO 3956]
ATGTAACGGCTTTCTT
>LAF_0391(manL) Score=4.7 Pos=-140 [Lactobacillus fermentum IFO 3956]
TAGTAAGCGTTTACAG
>LAF_0298(arcB) Score=4.7 Pos=-65 [Lactobacillus fermentum IFO 3956]
TTGAAAACGCTTGCTA
>LAF_1555(araE) Score=4.4 Pos=-76 [Lactobacillus fermentum IFO 3956]
GTGAAATCGCTTACAG
>LAF_1689(rbsK) Score=4.3 Pos=-91 [Lactobacillus fermentum IFO 3956]
TTGTAACCGGTTTACA
>LAF_1555(araE) Score=4.3 Pos=-100 [Lactobacillus fermentum IFO 3956]
TGGTAAGCGTTTTATA
>LAF_1792(galK) Score=4.1 Pos=-99 [Lactobacillus fermentum IFO 3956]
ATGTAAGCGCTCTATT
>LAF_1662(galM) Score=4.6 Pos=-40 [Lactobacillus fermentum IFO 3956]
TGGAAAACGCTTACTA
>LAF_0297(ycbB) Score=4.6 Pos=-82 [Lactobacillus fermentum IFO 3956]
TAGTAACCGCTTTTAT
>LAF_0868(pyk) Score=4.5 Pos=-125 [Lactobacillus fermentum IFO 3956]
AAGAAACCGTTTACAG
>LAF_0741(dhaT) Score=4.7 Pos=-39 [Lactobacillus fermentum IFO 3956]
ATGGAAGCGTATTCAA
>LAF_0797(adhX) Score=4.6 Pos=-31 [Lactobacillus fermentum IFO 3956]
ATGTAAGCGCTACCAA
>LAF_0277(adhE) Score=4.7 Pos=-197 [Lactobacillus fermentum IFO 3956]
TTGAAAACGCTTTCTC
>LAF_0045(gabD) Score=4.3 Pos=-62 [Lactobacillus fermentum IFO 3956]
GAAAAAGCGGTTACAA
>LAF_1735(ptsI) Score=4.2 Pos=-73 [Lactobacillus fermentum IFO 3956]
ATGATAACGGTTTATA
>LAF_1735(ptsI) Score=4.3 Pos=-119 [Lactobacillus fermentum IFO 3956]
TTTGAACCGGTTACAT
>LAF_0383(lp_0827) Score=4.9 Pos=-179 [Lactobacillus fermentum IFO 3956]
TTGACAGCGCTTACAA
>LAF_1558(araB) Score=4.6 Pos=-111 [Lactobacillus fermentum IFO 3956]
ATGAAAACGGTTTATT
>LAF_0247(lacL) Score=5 Pos=-48 [Lactobacillus fermentum IFO 3956]
TTGAAACCGTTATCAT
>LAF_1578(scrA) Score=4.5 Pos=-57 [Lactobacillus fermentum IFO 3956]
AGAAAAGCGCTTACAA
>LAF_1578(scrA) Score=4.4 Pos=-126 [Lactobacillus fermentum IFO 3956]
TTGGCAGCGATTTCAA
>LAF_1176(arcD) Score=4.4 Pos=-36 [Lactobacillus fermentum IFO 3956]
ATGTAAGCATATTCAT
>LAF_1646(coaA) Score=4 Pos=-35 [Lactobacillus fermentum IFO 3956]
ATGTAAGGGCTATCCA
>LAF_0998(mmgB) Score=4.6 Pos=-111 [Lactobacillus fermentum IFO 3956]
TTGAAAACGATTTCGT
>LAF_0740(malR3) Score=4.3 Pos=-77 [Lactobacillus fermentum IFO 3956]
AAGTAACCGTTTTCAC
# TF - AraR: LAF_1556
>LAF_1558(araK) Score=5.9 Pos=-77 [Lactobacillus fermentum IFO 3956]
TGATTTATACGGACAAAAAA
>LAF_1555(araE) Score=4.4 Pos=-153 [Lactobacillus fermentum IFO 3956]
ATATTGTTCAGTATAATTTA
>LAF_1554(araA) Score=5.9 Pos=-105 [Lactobacillus fermentum IFO 3956]
TGAATTGTACGGACAAATAT
# RNA - L10_leader
>LAF_0271(rplJ) Score=68.1 Pos=-148 [Lactobacillus fermentum IFO 3956]
GATTAAATATGACTCTGCCTAAGACTCAGGTGGCGCAAGCCTCAATACCCTGCCGAGGAAGAAATGAAATGTTCCTTCTCTATGTCTGCCAGTCATAGGGAATTTTTTATAAATTCCA
# RNA - TPP
>LAF_1533(ykoE) Score=74.3 Pos=-300 [Lactobacillus fermentum IFO 3956]
CAGAATCTGTCTGGGGTGCTATTGACTTAGCTGAGAAATACCCATTGAACCTGATCTAGTTAATACTAGCGGAGGAAGACAGTTGAATCAACGG
>LAF_0803(thiM) Score=62 Pos=-282 [Lactobacillus fermentum IFO 3956]
TAATAGTTGCTAGGGGTGTCGGACCACCGACTGAGACGCCAATTGGCGGACCCTTTGAACCTGGGAGTTTGGACTCGCGGAGGGAAGCAACGGTCGGCGAAA
>LAF_1705(ykoE) Score=57.7 Pos=-168 [Lactobacillus fermentum IFO 3956]
TATCTTGTCTGGGGTGCCATTGGCTGAGAAATACCCATTGAACCTGCTTTGGTTAGGACCAACGAAGGGAACGACAGGTAATCACCGTCAA
# RNA - FMN
>LAF_0875(ribU) Score=91.7 Pos=-215 [Lactobacillus fermentum IFO 3956]
TTTGTCTTCAAGGCAGGGTGTAATTCCCGACCGGCGGTATAGCCCGCAACCCGCACACGCGGTGGAACCCGGTGAAATTCCGGGTGCCGACAGTAAAGTCTGGTATGTAGAAGATCATCAC
>LAF_0776(ribD) Score=113.5 Pos=-297 [Lactobacillus fermentum IFO 3956]
ATAATTTCTTCGGGGCAGGGTGAAAATCCCGACCGACGGTGACAAGCAATGCTTGAAGTCCGTGACCCGCAAATTTGCGGCTGAACCAGTGCGATTCTGGTACCGACAGTGAAAGTCTGGATGGGAGAAGAAAAGG
# RNA - PyrR
>LAF_1205(pyrB) Score=59 Pos=-269 [Lactobacillus fermentum IFO 3956]
GATGTCCTTTAAGCTAGTCCCGTGAGGCTAGAAAGGTAACGGAGAAATTGCCCAGTTTGGGCCACCGTTGAACCCTTCACTTGCGGAATGCGAGTGGAGGGTTTTCTT
>LAF_0046(pyrR) Score=30.8 Pos=-106 [Lactobacillus fermentum IFO 3956]
ATGCCTTTAAGTGGATCCCGTGAGGTCACAAGGACGGAGAAATTGGTTAGCGCCGCCTTGGGGACTCTGGGGGGCGCTTTTGTTA
>LAF_0047(pyrF) Score=45.4 Pos=-116 [Lactobacillus fermentum IFO 3956]
TCACCATTTAAGTAACTCCAGCGAGGGTGCAAGGGTGAAGTGGGCCGTTAGTGCGGTGCCTTTTTCATGGCTTCTCCCTTCCTGGGGGAAGCCTTTTTGTTTAG
>LAF_0434(pyrP) Score=43.3 Pos=-115 [Lactobacillus fermentum IFO 3956]
AGTCCTTTAATGGAATCCCGTGAGGTTCTAAAGGGTCGGTCAAATCGCGAATAATTCGTGCCGTGCGCCTTTGGAACAGTGGATGTCCAAAGGCGTTTTTGTATGG
>LAF_1205(pyrB) Score=38.4 Pos=-146 [Lactobacillus fermentum IFO 3956]
ATAAACCATCAAATTGCTCCAGCGAGGGCAAAATGGTTACGCTTTCCGGATTAAAGACGGTAGTGGTAACGATTAACCTCCCTGGAGCAGCGCCAAGTTGCCCCGGGGAGGTTTTTTCTTT
>LAF_0911(codB) Score=49.7 Pos=-109 [Lactobacillus fermentum IFO 3956]
AAGTCTTTAACGACGTCCAGAGAGGCGGCGAAGACGATAAAAGATGGGTGTAGTCCCGTCATTTAGAATCCTCGCCACCCGGGCGGGGATTTTTTTGAAGGA
# RNA - L19_leader
>LAF_1219(rplS) Score=25.9 Pos=-59 [Lactobacillus fermentum IFO 3956]
AACGGTATTCCGCTGGTTCCAAGGGAATTAATGAATGTCGG
# RNA - L20_leader
>LAF_1311(infC) Score=60.4 Pos=-181 [Lactobacillus fermentum IFO 3956]
AAAGAAAAAGTAGAAGCACCCGCTTCTCGCCTAGGTGATTGGAGTCGCCGGGCTGACGAGATTAAATCCGAATGACCATTATGGTTAGTTCGCTTTGCGGGGGTGTGTGTGCACTCCCGTTTTTTCTTGCTTAA
# RNA - L21_leader
>LAF_1269(rplU) Score=50.4 Pos=-83 [Lactobacillus fermentum IFO 3956]
CCCACAACTACAACCGCACGATGGCGAGTTTAAAAGCATTCGCTACTCGTCTTGGCGAGTCTTAATTTAAGG
# RNA - Lysine
>LAF_0854(lysA) Score=80.7 Pos=-270 [Lactobacillus fermentum IFO 3956]
TAAATTGAAGAGGCGCAACCAACATGAGTAGCTACCAAGAGCCGGGTCAGGCAAGGAGGGGGAGTGAAAGGGGCGGTTGCCGAAGCACGGGGAAGTGACCGTTCCCTGGGGCTGGGGCGTGGCTTAAGAGGCTGCGGACTGTCGCGGGACAATGAGAGCCTGCGGTGCGCTATCAATTACGG
>LAF_1536(lysP) Score=93.1 Pos=-261 [Lactobacillus fermentum IFO 3956]
TCACACAAGAAGAGGTCGCACGACTCATCAGTATGGCGGGTTAGGCAAGCAAATGCCCCAGCCCGTTTGAAAGGGTGTCGTGCCGAAACATCGGTAATTTTGCTGTTGCCTTTGTTGGGACGTGGCTTAAGAGGCCACGGACTGTCGCAGTTTGCGGAGTGCTTCCAGATAC
# RNA - Purine
>LAF_1694(pbuX) Score=70.1 Pos=-146 [Lactobacillus fermentum IFO 3956]
ATTTAGAAAACGTAAGTGCCTATATAATCGCCGTAATATGGTCGGCAAGTCTCTACCTTCAGCCGCAAACTGAAGACTATAAGCAAAAGTGAGTGGGCTTT
# TF - Rex: LAF_0324
>LAF_0277(adhE) Score=4.9 Pos=-151 [Lactobacillus fermentum IFO 3956]
TTGAAATTTAATTCACAA
>LAF_0277(adhE) Score=4.5 Pos=-85 [Lactobacillus fermentum IFO 3956]
TTGTTGACTAAATCACAA
>LAF_1480(butA) Score=4.2 Pos=-78 [Lactobacillus fermentum IFO 3956]
TTGTGAAGTCTGTTACAA
>LAF_1372(adhB) Score=5.2 Pos=-89 [Lactobacillus fermentum IFO 3956]
ATGTTAAAAAGTTAACAA
>LAF_1372(adhB) Score=4.5 Pos=-201 [Lactobacillus fermentum IFO 3956]
TTGTAGAAAAATTCACCA
>LAF_0639(gldA) Score=5 Pos=-39 [Lactobacillus fermentum IFO 3956]
TTGTTAAAACATACACAA
# RNA - T-box(Ala)
>LAF_0521(alaS) Score=44.8 Pos=-224 [Lactobacillus fermentum IFO 3956]
ACACATCTGGGACATGACCGGTTGGGGGAACTTTTAGAAACGTGCTGGTGGCTGCAAAGCACGACGAACCAAACCAGGTTGCTCCCCAGGGGATAATTTAGTGATCAACCCCCACGGGGGATTAAAAGTGGCAAACGAATCCATCGTTGCAAGCAGAGTGGTACCGCGTCGACCGGCGTCTCTGTCTA
# RNA - T-box(Asn)
>LAF_0646(asnB) Score=110.3 Pos=-314 [Lactobacillus fermentum IFO 3956]
TAAGAGAAAAATGAGAAAGACGAGTAGGTCGTTGATTTGTCCAGTGAGTCAGGGCTAGTGGAAACCTGACCAACCCTCTGCGATTGAATAACACTTTCGAAGATTACTAACCCAAATGCATTGCAAAGTAGGCTTAGTCGTGACCGGAACGTTACCACCGGATGAGTATGTTTGTACTCAATGAAAAGTGGGCTAGTAATACCCTAGCCAACTTGGGTGGTACCGCGGAAATAAGCCTTTCGTCCCTTGT
# RNA - T-box(Asp)
>LAF_0832(hisS) Score=52 Pos=-221 [Lactobacillus fermentum IFO 3956]
GACTGTCAATGAAAAAGAATGATCAACTGGCCCGGGATAGCGAGTGGGTGGTGGTGCAAGACCCACCGGTGCGCTGGTTGAGTGACCCTTTGGAGACTGGGCGTTTGCCCCGCTGAGTATTCGGCGTTACCCACGAGTTGATACCAAGGTGGTACCGTGCATTTTGCACCCTTGTCTT
# RNA - T-box(Arg)
>LAF_1333(argS) Score=59.8 Pos=-228 [Lactobacillus fermentum IFO 3956]
TAATAAAGGCATTCCGGTCCCTGGAGTAGTAGTAACGGCGAACGTAATTAGCGACCCCTCGTTGGTGAAAGGAGGGGCGTTGCCGTTACGAAGGCGTGTCAGGGACCAGCAGTTAAATCGAAGTTTGAGTGGAATGATACATTCAATTAGAGTGGTACCGCGGGAAATCTCGTCTCTAGT
# TF - MntR: LAF_1543
>LAF_1828(mntH) Score=4.8 Pos=-91 [Lactobacillus fermentum IFO 3956]
TTTTTATGCTAACCTAACAA
# RNA - T-box(Gly)
>LAF_0842(glyQ) Score=44.8 Pos=-221 [Lactobacillus fermentum IFO 3956]
CTGCAACGATGACGGAAAAGATGGTTCAGCCGTCCATGAAGCGACCGGGGGAGGGTGCAAGCCCCGGGGGACGTGAACCTGGTGGCACTCCCGAGTTGCCTTAACGAAGCTGTCCCACCTCCCTGGGAAAGCAGGGTGGAACCGCGAAGTTATTCGTCCCTGCAAT
# RNA - T-box(His)
>LAF_0755(hisZ) Score=69.4 Pos=-272 [Lactobacillus fermentum IFO 3956]
AATGAGTAAGGACCAGGAGAGTAGGAGTGGGGCTCCCAAGCAGAGAGTCGCCGGCGCTGGGATGGCGATTGACCCCCGCTTCGAACCACACCTGGGAACTGGACGGCTGAACGGAGTAGGTCGGCCCGGGACCACCCGTTAGCAGGGTTGAAGTTAGCTTCAACGTGAGGCCCCTTTCGTGAGGGAGGGGTGAACGGAGGTGGAACCGTGCTCCTGTGCCCTCTTGCA
# RNA - T-box(Ile)
>LAF_0922(ilvE) Score=90.9 Pos=-444 [Lactobacillus fermentum IFO 3956]
AAACAACGCGATGAGAGAAACAGTAAGCATGACTGGTGCGCTAAGAGAAGCCCGGTAACGGTGAAACGGGAAGGCGCCTGACTGCTGAAGATCATTCTTGAGCGGGCTCCCCGAATGGTAAGGGAGCAAGGTGGCACCCGTTATCGTGCAGCGTATGAGCGATCGTACGTTTGAGGCTTGATTTTTCAAGCGAACTTAGGTGGTACCACGGTGCAAGTCGTCCTATTA
>LAF_0582(ileS) Score=103.6 Pos=-273 [Lactobacillus fermentum IFO 3956]
TAAAAGCATTGATGGGAACCCGTACGAAACGTCGACGATTAAGCGAGCCGGTGGTTGGTGCAAGACCGGTATCAAGACCTTCAAGCAAATCATCCCAGAGCGTGGTACTGAAGCGAGTAAGGACCACCGGTTCATGACCGTTACCAAATGACAAAGCAAAAGGAGCAGTCCTTTTGAAATTTGGGTGGTACCACGAGTGCGTCTCGTCCCTTTGCG
# TF - PurR: LAF_0194
>LAF_0124(purC) Score=5.6 Pos=-155 [Lactobacillus fermentum IFO 3956]
AAACACGAACATT
>LAF_0118(purE) Score=5.2 Pos=-106 [Lactobacillus fermentum IFO 3956]
AAATCCGAACAAT
>LAF_1806(pbuG) Score=4.3 Pos=-67 [Lactobacillus fermentum IFO 3956]
AAAGCCGAATATT
>LAF_0044(purA) Score=5.3 Pos=-123 [Lactobacillus fermentum IFO 3956]
AAAACCGAACAAT
>LAF_0194(purR) Score=5.2 Pos=-98 [Lactobacillus fermentum IFO 3956]
AAAGACGAACAAT
# RNA - T-box(Leu)
>LAF_1354(leuS) Score=99.3 Pos=-275 [Lactobacillus fermentum IFO 3956]
AATATCAGACCGGAAGGGGAAAAGTAACCCGGGGCGACCCTTAAAGAGACCACATGGGGCTGGAAATGTGGAGGGCAAGCCGGGTGAACTCACCCCGCTAAAGGGCGGTGAAACCAGTAGTCGTCCTCGTTTCCCGCGTTAAGGGGCTAAGGGCCACGGCAACGTGGAACGATGGGTGGTACCGCGGAGAAATTCGTCCCGTTT
# RNA - T-box(Met)
>LAF_0826(metA) Score=80.5 Pos=-274 [Lactobacillus fermentum IFO 3956]
ATAAATTTCGTTGATGAGAAGAGTAGCGACGGCGGTCACCTACAGAGAGCCCCGGCTGGTGAGAGGGGTGCTGATCAAGGTCGTGAAGATGATCTCGGAGGAAGAGCGGGGGTCCTCGGGCTACCCGCTCCGGTGGCACCCGATACCGTGCGGGGGATGTATGTCCTCGCTAAGGCTGCTTTGGCAGCGAAATTGGGTGGTACCACGAAGTCCTCGTCCCATGG
>LAF_0302(metE2) Score=81.7 Pos=-328 [Lactobacillus fermentum IFO 3956]
ATAAGTTGCTGAGAACAGATGAGTAACTGGTTGGCCCCCACCCAGAGATGTGGGGGAGCTGAGAACCACGGGGTGGCTAACTAGTGAAGATGGTCTGGGAGCAAGTTCGACCAGTGAATTCATTAACTGGTGGCGGTTGGGCCCGTTATCACCCCGGGTATCTCCGTTTGGACGTACCTCGTGAGGGTTTTGCCGTGAGGGAGAACCGAATTAGGGTGGTAACACGCTTTTAAGATAACTTGAATGCGTCCCTAGA
>LAF_0793(metQ2) Score=72.8 Pos=-284 [Lactobacillus fermentum IFO 3956]
GAAAAGTTAGAAAGATGAGTAAACCGGGAGGGGTGCCCAGAGAGTCAGCGCTTGGTGAAAGCTGAACTCCCTGAACGGTTGAAGATGGTCTTTGTGCAATGCCGGGGTGAGCCAGTGGTGAGCCCCGACCGGGTTAACGCCCGTTATCACCGTTACGGCTTGTTGGAGCCGGTCGAGGGTCCCCGCGGGGACTGAAAATGGGTGGTAACACGTTGATCAACGTCCCATGAGG
>LAF_0053(metQ) Score=90.3 Pos=-317 [Lactobacillus fermentum IFO 3956]
AAAACATATCGAAAAGCAGAGTAATCGTTAGCGGCTAGCAAGAGAGTTTCCGGTTGGTGGAAGGGAACAGCTTAAGGCGGTGAAGATGGGCTTGGAATGGCACCGGCGATAGTTAGTTGGTGACGGAGTTGCACACGTTATCAGTGCAGGGTAATTCCTTGAGGAGTAACCCGCTAAGGCTACCAGCCGTGAGGTGGTAGCGAATTAAGGTGGTAACGCGAAGCACTCGCCCTTGATCA
>LAF_1601(metE2) Score=72.1 Pos=-316 [Lactobacillus fermentum IFO 3956]
AGAAACAGCTGAGAAGAGATGAGTAAGGACCGGAAACCTCCTAAGAGAGGCGGGATAGGTGCAAGCCGCCGTGGTGAAAGGTCCTGAAGATGGTCTTGGAGCAATCCGGCTCTGCAAACGATGGTGAGCGGACCGCGGATGACGCCCGATATTGCGTCTGGGTATTCCTTGGAGTACCCACTGAGGACCCGATCGCGAGGTGGGGTCAAATAAGGGTGGTAACACGATCAAGCGTCCCTGAA
>LAF_0814(metB) Score=76.1 Pos=-280 [Lactobacillus fermentum IFO 3956]
TGTTCACGTTGATGAGAAGAGTAGCGGGCAGCGCCGTTTTCAGTGACCGCCGTAAGTGCAAAGGCGGACGGTTAACCCCGCGAAGATGAGCTCGGAGTGTTGAAAAGTGGTCGCAGGGCTGCTTTTCCGGTAGGACCCGTTACTGTCCCTGGCATCCATTGGGTGCTGTAGAGGCCGTTAGGGTAATCTAGCGGTAAACAAGGGTGGCACCACGAGTAATCGTCCCTGGATT
# RNA - T-box(Phe)
>LAF_1289(pheS) Score=100.6 Pos=-246 [Lactobacillus fermentum IFO 3956]
TAAAAAGACAGTGATGGAAACTAGTAACTGTCGCAAGTAGTTTCAGGGAGGTCGGGGTAGCAACTGGAACCCCAACCACTACTTTAGCAGCGAATTTCACTTCCGGAGTCGGTACTTGTACCCGGTTGATTACCGTTACCAATCAAAAAAGTGTTTGGCAATTGTCAAGAACTAGGGTGGTACCGCGAAGCCTCGTCCCTTTT
# RNA - T-box(Ser)
>LAF_0066(serS) Score=69 Pos=-249 [Lactobacillus fermentum IFO 3956]
TAAAATGGCTGTAATTTCAAAACACGGGGTGCTTCAAGTAGGAACCAAGAGAGCTGGCGGGTGGTGGAAGCCAGCTTCCGAAACTCCGGCACCATCAATGTGGGCGGGTAATGCCGCACGGTCTGGTGGCCGTTATTCACCATAGAGCGTGCTGATTTCAGCAAACTTGGGTGGTACCGCGGAACAAGAGCCATTTCGTCCCAACTGT
# RNA - T-box(Thr)
>LAF_1830(thrS) Score=57.3 Pos=-169 [Lactobacillus fermentum IFO 3956]
CAAATGCGGGATACGCCTAACTACAAGCGGTAAACCAGGGAAGGGTGCCATGGCTGGAAGCACCTTTACACGGAGTAGTTAAGGTACCACCCCATTTCTTGCCCCCCGAAATAAGGGGGACCGGGTCGTGCCCGTTACCACACCATAGAGAGGATTTTAAATCCTGAAGATGGGTGGAACCACGCTGAAGTTGTTATTTTCAACGTCCCTAACGT
# RNA - T-box(Trp)
>LAF_0067(trpS) Score=46.5 Pos=-218 [Lactobacillus fermentum IFO 3956]
AATCAGACCGGGAAAACAGTAGAAGGTGCTCAAACAGAGACGGCTGACCTTGGTGAAACAGCCGGCGCCCCTTCGAATTGGAGCCGCGGTCAACATTGCAATACACCAATAAGTGACGGGAATTTCCCCGTAAGATAGGTGGCACCGCGGTCATTCGTCCTATCC
# RNA - T-box(Tyr)
>LAF_0068(tyrS) Score=61.5 Pos=-249 [Lactobacillus fermentum IFO 3956]
TAGTTACATTGTGATGGGAACCCAGTAGAAGCCGTCCCGCTGGCCAAGGGAGCTAATGGTGGTTGGGAATTAGCGCACGGGCGGTCTTCGAATTACACTCCCATCAATTTTTAATCTAATCCGCGTTAAATGAGGTGCGTTTTTACGCATAAAAATGGGTGGTACCACGGCTGATTCGTCCCTGTG
# RNA - T-box(Val)
>LAF_0278(brnQ) Score=82.3 Pos=-329 [Lactobacillus fermentum IFO 3956]
GAAACACGGTGAACAGGAGAGTAACTCCCGTTATAAACCAGTAAGCGAGCCCCGTTGAGTGGAAGGGGGTCTGGTTTGAAGGGAGCGAAAGTAGCCTGGGAGTGGTCGATGCGAAGTTTGAGTGTCGAACGGGTGCGCCCGTAATCGCGCCGGCGTATTCCGCGGAGTACGCGTTGAGGCGGGGCCAGCGATGGTGCCGTAAATCAAGGGTGGTAACACGCTTAGGCGTCCCTTCAGG
>LAF_0497(valS) Score=119.4 Pos=-264 [Lactobacillus fermentum IFO 3956]
TCAATGCGATGAACGAGAGAGTAATGAATAGAGGGACCGCCTAAGCGAGGATCCGGTGGTGGAAAGGATCCCGGCACTCTGATCATGAAGGTAGCTCGTGAGCAGGAGTCCTGAATTAAGTAGGGGTTCCCGGTTCATTTACCGTTATCAAATGGCAAAGAGGGAGTGGCAGTGGCCACTTCAAATTAGGTGGTACCGCGAGAAGACTCGTCCTATGTTA
# TF - CopR: LAF_1037
>LAF_0138(copA2) Score=4.9 Pos=-80 [Lactobacillus fermentum IFO 3956]
TCGTTGACAATTGTAAACGG
>LAF_1037(copR) Score=4.6 Pos=-42 [Lactobacillus fermentum IFO 3956]
ACGGGTACACTTGTAAACTG
>LAF_0138(copA2) Score=5.7 Pos=-35 [Lactobacillus fermentum IFO 3956]
AGATTTACAGTTGTAAACGA
# TF - ScrR: LAF_1819
>LAF_1580(scrB) Score=5.5 Pos=-73 [Lactobacillus fermentum IFO 3956]
TATGCTAATCGATTGACAGC
>LAF_1578(scrA) Score=5.9 Pos=-106 [Lactobacillus fermentum IFO 3956]
TATGTCAAACGGTTGACAAT
# TF - FabT: LAF_0309
>LAF_0309(fabT) Score=6 Pos=-54 [Lactobacillus fermentum IFO 3956]
ATTTTGATATTCAAATT
# TF - MalR: LAF_0023
>LAF_0024(malT) Score=6.6 Pos=-122 [Lactobacillus fermentum IFO 3956]
TTGTGCAAACGGTTGCACAA
# TF - DeoR: LAF_1739
>LAF_1739(deoR) Score=5.3 Pos=-88 [Lactobacillus fermentum IFO 3956]
TTGAATACGCTTTCAT
>LAF_1740(deoC) Score=5.7 Pos=-37 [Lactobacillus fermentum IFO 3956]
ATGAAAGCGTATTCAA
# TF - NrtR: LAF_1389
>LAF_1390(pncA) Score=6 Pos=-54 [Lactobacillus fermentum IFO 3956]
TTTAGGTATTTTTTACTTTAA
# TF - PerR: LAF_1362
>LAF_0409(ahpC) Score=5 Pos=-32 [Lactobacillus fermentum IFO 3956]
TGATAATCGTTCTAA
>LAF_1546(pcl2) Score=5.3 Pos=-103 [Lactobacillus fermentum IFO 3956]
TTAGAATTCTTCTAA
>LAF_1546(pcl2) Score=5.7 Pos=-39 [Lactobacillus fermentum IFO 3956]
TTATAATGGTTCTAA
>LAF_1361(ycnB) Score=5.3 Pos=-109 [Lactobacillus fermentum IFO 3956]
TTATAATCATTTTAA
>LAF_1361(ycnB) Score=4.8 Pos=-30 [Lactobacillus fermentum IFO 3956]
TTATAAGTTTTCTAA
>LAF_1362(perR) Score=5.6 Pos=-27 [Lactobacillus fermentum IFO 3956]
TTAAAATGATTATAA
# TF - RbsR: LAF_1343
>LAF_1738(rbsK) Score=6.2 Pos=-59 [Lactobacillus fermentum IFO 3956]
TACGTAAAAGGTTTTAACAA
>LAF_1689(rbsK) Score=5 Pos=-47 [Lactobacillus fermentum IFO 3956]
AACGTAAAACGATTTACTGA
>LAF_1343(rbsR) Score=6 Pos=-44 [Lactobacillus fermentum IFO 3956]
TTAGTAAACTGTTTTATTAA
# TF - ArgR: LAF_1823, LAF_1258
>LAF_0624(artM) Score=3.6 Pos=-63 [Lactobacillus fermentum IFO 3956]
CTTGCATAATAATTCGTT
>LAF_1625(argG) Score=2.3 Pos=-136 [Lactobacillus fermentum IFO 3956]
CTTGCATTTTTATTTGAT
>LAF_0726(argC) Score=4.9 Pos=-220 [Lactobacillus fermentum IFO 3956]
TGTGTATAAATATTTAGT
>LAF_0727(carA) Score=3.3 Pos=-120 [Lactobacillus fermentum IFO 3956]
CGTTCATAAATAACCAAT
# TF - GalR: LAF_1790
>LAF_0247(lacL) Score=5.5 Pos=-91 [Lactobacillus fermentum IFO 3956]
TAATATTTACTAAACTTTT
# TF - HrcA: LAF_0749
>LAF_0749(hrcA) Score=6.4 Pos=-33 [Lactobacillus fermentum IFO 3956]
TTAGCACTTAGATGGCCAGAGTGCTAA
>LAF_0325(groS) Score=5.7 Pos=-87 [Lactobacillus fermentum IFO 3956]
TTAGCACTTGAGGGGGTTGAGTGCTAG
>LAF_0360(clpP) Score=5.5 Pos=-44 [Lactobacillus fermentum IFO 3956]
TTAGCAAACAGTACTAACTAGTGCTAA
>LAF_1388(clpL) Score=5.6 Pos=-190 [Lactobacillus fermentum IFO 3956]
TTAGCATTAGTTGCCAATCAGTGCTAA
# TF - Zur: LAF_1665
>LAF_0191(znuA) Score=6.7 Pos=-48 [Lactobacillus fermentum IFO 3956]
TTAATCGTAAGGATTACGATTTA
>LAF_1127(rpsN2) Score=6.5 Pos=-82 [Lactobacillus fermentum IFO 3956]
TAAATGGTAATAATTACTATTTG
>LAF_1665(zur) Score=5.8 Pos=-37 [Lactobacillus fermentum IFO 3956]
AAAAACGTAATCATTACTAAAAA
# TF - NrdR: LAF_1314
>LAF_1675(nrdI) Score=4.7 Pos=-30 [Lactobacillus fermentum IFO 3956]
CCACAACATCTTGTGA
>LAF_1376(nrdD) Score=4.7 Pos=-99 [Lactobacillus fermentum IFO 3956]
CCACAAGATCTTGTAA
>LAF_1376(nrdD) Score=5.3 Pos=-68 [Lactobacillus fermentum IFO 3956]
AAACTATATGTTGTGT
>LAF_0281(nrdH) Score=5.4 Pos=-109 [Lactobacillus fermentum IFO 3956]
CCACCATATCTTGTGT
>LAF_0281(nrdH) Score=4.4 Pos=-78 [Lactobacillus fermentum IFO 3956]
GCACGAGATATGGTGG
# TF - LacR: LAF_0781
>LAF_0780(lacZ) Score=5.5 Pos=-112 [Lactobacillus fermentum IFO 3956]
AATATTTACTAATTAAC
>LAF_0781(lacR) Score=5.5 Pos=-185 [Lactobacillus fermentum IFO 3956]
GTTAATTAGTAAATATT
# TF - MalR3: LAF_0740
>LAF_0739(nplT) Score=6 Pos=-56 [Lactobacillus fermentum IFO 3956]
TTACTCAAACGTTTGCGTAA
>LAF_0740(malR3) Score=6 Pos=-121 [Lactobacillus fermentum IFO 3956]
TTACGCAAACGTTTGAGTAA
# TF - GntR2: LAF_1049
>LAF_1047(gntK) Score=6.5 Pos=-60 [Lactobacillus fermentum IFO 3956]
TGGTGTATCGATAAACCA
# TF - CtsR: LAF_1527
>LAF_0360(clpP) Score=6.6 Pos=-90 [Lactobacillus fermentum IFO 3956]
AATGATTTGACCTTTTTTGACCTA
>LAF_0749(hrcA) Score=6.4 Pos=-89 [Lactobacillus fermentum IFO 3956]
AGATCTTTGACTTTTGTTGACTTT
>LAF_1388(clpE) Score=-0.7 Pos=-48 [Lactobacillus fermentum IFO 3956]
ATGGTCAAGAAAAGTCAAAGGTTG
>LAF_0325(groS) Score=-0.6 Pos=-153 [Lactobacillus fermentum IFO 3956]
TTGGTCAAAATTAGTCAAAGTTTT
# TF - LexA: LAF_0708
>LAF_0708(lexA) Score=4.9 Pos=-79 [Lactobacillus fermentum IFO 3956]
TCGAACGTACGTTTTA
>LAF_0511(recA) Score=3.9 Pos=-89 [Lactobacillus fermentum IFO 3956]
CCGAACCCCTGTTCGA
>LAF_1605(umuC) Score=3.9 Pos=-67 [Lactobacillus fermentum IFO 3956]
CCGAACACTTGTTCCG
>LAF_0036(addB) Score=4.1 Pos=-75 [Lactobacillus fermentum IFO 3956]
GCGAACATTCATTCCC
>LAF_0353(uvrB) Score=4.7 Pos=-99 [Lactobacillus fermentum IFO 3956]
ACGAATAAACGTTCGT
# TF - BirA: LAF_0322
>LAF_0321(bioY) Score=8.5 Pos=-54 [Lactobacillus fermentum IFO 3956]
ATTGTAACC----------------GGTTACAAA
# TF - Lp_2742: LAF_1400
>LAF_1400(lp_2742) Score=6.7 Pos=-48 [Lactobacillus fermentum IFO 3956]
TTAGTTACACAAGTAATTAA
# TF - FlpA: LAF_1699, LAF_1464
>LAF_1702(cadA) Score=5.2 Pos=-69 [Lactobacillus fermentum IFO 3956]
CTCTTGATTCCGATCAATTT
>LAF_1700(dps) Score=5.1 Pos=-298 [Lactobacillus fermentum IFO 3956]
AAGTTGATGAGGATCAATTA
>LAF_1701(copZ) Score=5.1 Pos=-68 [Lactobacillus fermentum IFO 3956]
AAGTTGATGAGGATCAATTA
>LAF_1466(copZ) Score=4.8 Pos=-91 [Lactobacillus fermentum IFO 3956]
AAGTTGATAGAAAACAATTT
# TF - NihR: LAF_1734
>LAF_1734(nihR) Score=4.4 Pos=-129 [Lactobacillus fermentum IFO 3956]
TGTTACATAAGGAAAA
>LAF_1733(PF09861) Score=4.4 Pos=-127 [Lactobacillus fermentum IFO 3956]
TTTTCCTTATGTAACA
# TF - YxeR: LAF_1826
>LAF_1826(yxeR) Score=3.8 Pos=-83 [Lactobacillus fermentum IFO 3956]
AAGTTGACACGGTGTCACCTC
>LAF_1826(yxeR) Score=4.2 Pos=-42 [Lactobacillus fermentum IFO 3956]
CGAGTGACACGGTGTCACTAT
# RNA - SMK_box_riboswitch
>LAF_1358(metK) Score=41.5 Pos=-90 [Lactobacillus fermentum IFO 3956]
GTTATGAAGCAATTCCCGATGGGGGGAGCCCAGTGCTCCGCTGCCTTGTAACCGCAAAACACTATGTTTAGAAAATGGGGGAATTATCACATG
# TF - NagR: LAF_0242
>LAF_0382(glmS) Score=4.9 Pos=-47 [Lactobacillus fermentum IFO 3956]
GAATTTATCTATACCAATTT