# TF - SphR: Cyan7425_0392
>Cyan7425_0207 Score=7.8 Pos=-81 [Cyanothece sp. PCC 7425]
TTTAACGA-(3)-CTTTAGCA-(3)-GATTACCT
>Cyan7425_4261(phoA1) Score=9 Pos=-146 [Cyanothece sp. PCC 7425]
ATTAATCA-(3)-GTTTACCT-(3)-CATAAATC
>Cyan7425_4387(SYNPCC7002_A2263) Score=7.5 Pos=-102 [Cyanothece sp. PCC 7425]
ATTATCAT-(3)-TATTACCT-(3)-CCTTACCC
>Cyan7425_1977(ppk) Score=8.4 Pos=-238 [Cyanothece sp. PCC 7425]
GTTATCCC-(3)-GTTAATTT-(3)-ATTAAATC
>Cyan7425_0664(pstS) Score=10.1 Pos=-80 [Cyanothece sp. PCC 7425]
ATTAATCT-(3)-CTTAATCT-(3)-CTTTATCC
# TF - Fur: Cyan7425_1789
>Cyan7425_2411(pchR) Score=4.9 Pos=-71 [Cyanothece sp. PCC 7425]
ATTGTTAATCTTTTTCATT
>Cyan7425_2410(fhuA) Score=5.8 Pos=-56 [Cyanothece sp. PCC 7425]
ATTGAGAATAATTCTTATT
>Cyan7425_2418(exbB) Score=4.6 Pos=-264 [Cyanothece sp. PCC 7425]
ATTGATGATTATTTTCAAC
>Cyan7425_2438(pchR) Score=4.5 Pos=-37 [Cyanothece sp. PCC 7425]
ATTAAGAATAAGTCTCAGT
>Cyan7425_2439(fhuA) Score=5.1 Pos=-66 [Cyanothece sp. PCC 7425]
ATTGAGAGTATTTCTTATT
>Cyan7425_1597(perR) Score=4.9 Pos=-88 [Cyanothece sp. PCC 7425]
TTTGAGAATTATACTAAAT
>Cyan7425_5031(psbD) Score=3.1 Pos=-91 [Cyanothece sp. PCC 7425]
GTTTATAAACTTTCGTAAA
>Cyan7425_4671(psaA) Score=3.4 Pos=-292 [Cyanothece sp. PCC 7425]
TCTATGAATTTTTATTAAT
>Cyan7425_3510(afuC) Score=4 Pos=-60 [Cyanothece sp. PCC 7425]
GTTGAATAATAGTCTTAAT
>Cyan7425_3510(afuC) Score=5.3 Pos=-105 [Cyanothece sp. PCC 7425]
ATTGAGAATAATTTTCAAA
>Cyan7425_1838(apcF) Score=3 Pos=-245 [Cyanothece sp. PCC 7425]
TTTTATATTATCTTTTAAC
>Cyan7425_1059(psbA) Score=3.4 Pos=-182 [Cyanothece sp. PCC 7425]
ATTATTAATAAGTTTCAAA
>Cyan7425_2984(cce_4396) Score=2.7 Pos=-78 [Cyanothece sp. PCC 7425]
TATATGAATATCTTGTAAT
>Cyan7425_2984(cce_4396) Score=3.9 Pos=-48 [Cyanothece sp. PCC 7425]
ATTGCAATTATATTACAAT
>Cyan7425_2434(isiA) Score=4.7 Pos=-61 [Cyanothece sp. PCC 7425]
ATTGAGTTTATTTCTCAAC
>Cyan7425_3508(sufA) Score=3.5 Pos=-165 [Cyanothece sp. PCC 7425]
ATTAGGAATGAATCGTAAT
# TF - LexA: Cyan7425_1233
>Cyan7425_1469(ssb) Score=4.1 Pos=-18 [Cyanothece sp. PCC 7425]
AGTACAGGTAAACT
>Cyan7425_1233(lexA) Score=4.5 Pos=-131 [Cyanothece sp. PCC 7425]
GATACAAGTGTTCT
>Cyan7425_1671(recA) Score=4.5 Pos=-39 [Cyanothece sp. PCC 7425]
AGTACGGATATACT
>Cyan7425_4886(SYNPCC7002_A0856) Score=4.4 Pos=-52 [Cyanothece sp. PCC 7425]
ACTACACTTGTATT
# TF - NrtR: Cyan7425_2238
>Cyan7425_2236(pncB) Score=6.1 Pos=-50 [Cyanothece sp. PCC 7425]
TTATGGTAGAAACTACTATAA
>Cyan7425_4975(nadA) Score=5.7 Pos=-53 [Cyanothece sp. PCC 7425]
TTTTGGTAAATTCGACTATAA
# TF - NtcA: Cyan7425_0755
>Cyan7425_0782(amt1) Score=4.4 Pos=-228 [Cyanothece sp. PCC 7425]
TGTATAACGTGATACA
>Cyan7425_0729(SYNPCC7002_A0076) Score=4.3 Pos=-128 [Cyanothece sp. PCC 7425]
TGTAACATTTGTTATT
>Cyan7425_0729(SYNPCC7002_A0076) Score=4.1 Pos=-71 [Cyanothece sp. PCC 7425]
AGTATTGGTGGATACA
>Cyan7425_0833(SYNPCC7002_A2395) Score=3.7 Pos=-38 [Cyanothece sp. PCC 7425]
AGTAGTTTAATAAACT
>Cyan7425_0732(cce_3797) Score=5.2 Pos=-33 [Cyanothece sp. PCC 7425]
TGTATCATAAGCTACA
>Cyan7425_1839(glnA) Score=4.9 Pos=-221 [Cyanothece sp. PCC 7425]
TGTAACTCATGATACA
>Cyan7425_4042(Cyan7425_4042) Score=4.4 Pos=-151 [Cyanothece sp. PCC 7425]
AGTAGCTCGTGATACA
>Cyan7425_4573(nirA) Score=4.5 Pos=-123 [Cyanothece sp. PCC 7425]
TGTAACTTAATATACC
>Cyan7425_0851(nrrA) Score=4.1 Pos=-82 [Cyanothece sp. PCC 7425]
AGTAGCTAGAGTTACG
>Cyan7425_0755(ntcA) Score=4.8 Pos=-173 [Cyanothece sp. PCC 7425]
TGTATCCGATGATACA
>Cyan7425_1599(ntcB) Score=4.6 Pos=-78 [Cyanothece sp. PCC 7425]
TGTATCACTATCTACA
>Cyan7425_0732(SYNPCC7002_A2101) Score=5.2 Pos=-33 [Cyanothece sp. PCC 7425]
TGTATCATAAGCTACA
>Cyan7425_1838(apcF) Score=4.9 Pos=-281 [Cyanothece sp. PCC 7425]
TGTATCATGAGTTACA
>Cyan7425_4369(nifJ) Score=3.1 Pos=-120 [Cyanothece sp. PCC 7425]
TCTAACGTATTCTCCA
>Cyan7425_2260(urtA) Score=3.7 Pos=-148 [Cyanothece sp. PCC 7425]
TGTATAATAGATCACA
>Cyan7425_1393(gifB) Score=4.7 Pos=-158 [Cyanothece sp. PCC 7425]
GGTATCATATAATACA
# TF - NtcB: Cyan7425_1599
>Cyan7425_4573(nirA) Score=4.5 Pos=-174 [Cyanothece sp. PCC 7425]
ATGCAGGTTTGGCAT
>Cyan7425_2230(psbJ) Score=4.6 Pos=-238 [Cyanothece sp. PCC 7425]
ATGCAGTTTATTCAT
>Cyan7425_0859(psbM) Score=3.9 Pos=-220 [Cyanothece sp. PCC 7425]
ATGCGGCACCTGTAT
# TF - Zur: Cyan7425_4383, Cyan7425_1917
>Cyan7425_0794(cce_1485) Score=5.3 Pos=-29 [Cyanothece sp. PCC 7425]
ATAAGAATTATTCTCATTTTCAC
>Cyan7425_0822(cce_1484) Score=5.2 Pos=-29 [Cyanothece sp. PCC 7425]
TTGAAAATGAGAATGGTTCTTAT
>Cyan7425_1909(yciC2) Score=6.2 Pos=-41 [Cyanothece sp. PCC 7425]
TTGATAATGATTATCATTGTATA
>Cyan7425_1916(Cyan7425_1916) Score=6.4 Pos=-104 [Cyanothece sp. PCC 7425]
AAGGCAATGATAATCATTATCAT
>Cyan7425_1917(zur) Score=6.4 Pos=-56 [Cyanothece sp. PCC 7425]
ATGATAATGATTATCATTGCCTT
# TF - SufR: Cyan7425_3451
>Cyan7425_3450(sufB) Score=5 Pos=-106 [Cyanothece sp. PCC 7425]
TTAGACAACTGATGTGTTGCTAAA
>Cyan7425_3450(sufB) Score=5.3 Pos=-67 [Cyanothece sp. PCC 7425]
TTAAGCAACGCCTGAGTTGTTTAA
>Cyan7425_3451(sufR) Score=5.8 Pos=-74 [Cyanothece sp. PCC 7425]
TTTAGCAACACATCAGTTGTCTAA
>Cyan7425_3451(sufR) Score=5.5 Pos=-113 [Cyanothece sp. PCC 7425]
TTAAACAACTCAGGCGTTGCTTAA
# TF - Crp: Cyan7425_1533
>Cyan7425_4803(hesB) Score=4.2 Pos=-227 [Cyanothece sp. PCC 7425]
AGCGATCAAAATCATC
>Cyan7425_2361(nifB) Score=3.9 Pos=-40 [Cyanothece sp. PCC 7425]
ACTGTTATAAAGCACC
>Cyan7425_4795(Cyan7425_4795) Score=3.8 Pos=-208 [Cyanothece sp. PCC 7425]
TCTGAGCTGAAACACG
>Cyan7425_5163(SYNPCC7002_A1600) Score=4.4 Pos=-102 [Cyanothece sp. PCC 7425]
TGTGATCTCAGTCATG
>Cyan7425_4645(serS) Score=3.7 Pos=-420 [Cyanothece sp. PCC 7425]
TGTGATACATCACACC
>Cyan7425_4859(cupA) Score=4.7 Pos=-303 [Cyanothece sp. PCC 7425]
TGTGATTTTGATCAAC
>Cyan7425_1076 Score=4.8 Pos=-107 [Cyanothece sp. PCC 7425]
AGTGATCAAAGTCATG
>Cyan7425_1645(ppa) Score=3.7 Pos=-273 [Cyanothece sp. PCC 7425]
ACTGATTAAGGGCACT
>Cyan7425_3949(sigF) Score=4.4 Pos=-91 [Cyanothece sp. PCC 7425]
TGTGTTCTAGATCACT
>Cyan7425_3340(rlpA) Score=4.2 Pos=-328 [Cyanothece sp. PCC 7425]
CGTGATTCGGATCACA
# TF - CcmR: Cyan7425_3855
>Cyan7425_3855(ccmR) Score=5.9 Pos=-93 [Cyanothece sp. PCC 7425]
ATAGATTTTTGTCTAT
>Cyan7425_3542(mnhC) Score=4.7 Pos=-121 [Cyanothece sp. PCC 7425]
ATTTATAAATATCTAT
>Cyan7425_4925(cmpA) Score=5.2 Pos=-286 [Cyanothece sp. PCC 7425]
ATAGACTTAGGGCTAT
>Cyan7425_5063(sbtA) Score=4.2 Pos=-94 [Cyanothece sp. PCC 7425]
TTTTACCTATGTCTAT
# TF - HrcA: Cyan7425_5123
>Cyan7425_2334(groEL2) Score=10.2 Pos=-139 [Cyanothece sp. PCC 7425]
TTAGCACTC---------GAGTGCTAA
>Cyan7425_5138(groES) Score=10.2 Pos=-123 [Cyanothece sp. PCC 7425]
TTAGCACTC---------GAGTGCTAA
# TF - PerR: Cyan7425_1597
>Cyan7425_1596(ahpC) Score=4.8 Pos=-138 [Cyanothece sp. PCC 7425]
TTAGTATAATTCTCA
>Cyan7425_1596(ahpC) Score=5.5 Pos=-86 [Cyanothece sp. PCC 7425]
TCAGAATTATTCTGG
>Cyan7425_1597(perR) Score=5.2 Pos=-138 [Cyanothece sp. PCC 7425]
CCAGAATAATTCTGA
>Cyan7425_1597(perR) Score=5.2 Pos=-86 [Cyanothece sp. PCC 7425]
TGAGAATTATACTAA
>Cyan7425_2434(isiA) Score=4.9 Pos=-95 [Cyanothece sp. PCC 7425]
TGAGAAAGATTCTGA
# TF - PedR: Cyan7425_0293
>Cyan7425_3849(slr1957) Score=5.1 Pos=-86 [Cyanothece sp. PCC 7425]
AAGTATTTATACCT
>Cyan7425_0836(ndhD2) Score=4.2 Pos=-110 [Cyanothece sp. PCC 7425]
AAGTAGGTTTACCC
>Cyan7425_1996(rpe) Score=3.9 Pos=-14 [Cyanothece sp. PCC 7425]
GAGGAACTTTACCT
>Cyan7425_0836(ndhD2) Score=4.4 Pos=-8 [Cyanothece sp. PCC 7425]
AAGTATTTATGCTC
>Cyan7425_0293(pedR) Score=4.3 Pos=-28 [Cyanothece sp. PCC 7425]
AAGTAATTGTACGG
# TF - SmtB: Cyan7425_4462
>Cyan7425_4462(smtB) Score=7.3 Pos=-124 [Cyanothece sp. PCC 7425]
AACATCTGAACAACTGTTCATATGTT
# RNA - TPP
>Cyan7425_3220(thiC) Score=68.3 Pos=-103 [Cyanothece sp. PCC 7425]
GCTCAAGCTAGGGGTGCCTAAAGTGGCAGGCTGAGATTAGACCCTTAGAACCTGAGACCGGGTCATACCGGCGGAGGGAAGCTTTTACTTTGAGGAAC
# RNA - Cobalamin
>Cyan7425_5052(hupE) Score=40.9 Pos=-183 [Cyanothece sp. PCC 7425]
TTGAACAATGTGTCATTGGCTCCGGTGGGGAACAGCCACTGGAGGTAGTTACTGCACTACTGGGGAAAGCTCGGTGTAAGTCCGACACTGTCCCGCAACTGTGAAGGAGCAATTCTCCCAGTCAGAATGCCCGCCAATGGTTCCCTTCGGTTTAG
>Cyan7425_1197(cbiX) Score=25.6 Pos=-201 [Cyanothece sp. PCC 7425]
TAAGATAACCACGTACTCGTGAACAGTCGTTTTCCGGGAAAATCCAGTGCTCCTGCCAGGGATAACGGATCAGCCATCAAACTATTCAAAGCAGGAAAATCTGGTGCTGTGCCGCAACTGTGATGGAAGCTTCCTCAGCCAGAACACCGGAGAGCCACTTTTTCACTCTTAC
# TF - ArsR: Cyan7425_0671
>Cyan7425_0671(arsR) Score=4.7 Pos=-14 [Cyanothece sp. PCC 7425]
TTCAAGTAAAGTTGAT
# TF - NrtR2: Cyan7425_2119
>Cyan7425_2213 Score=5.1 Pos=-49 [Cyanothece sp. PCC 7425]
ATAGTGTTATTGAGACACTAT
>Cyan7425_2213 Score=5.9 Pos=-26 [Cyanothece sp. PCC 7425]
TTAGTGTAGTTTATACACAAA
# RNA - GEMM_RNA_motif
>Cyan7425_5453 Score=33.3 Pos=-340 [Cyanothece sp. PCC 7425]
AGTCCCGAAAAGGCAACTTACTCCGAAAGGGTAAGGCGCAAATTGGTAATCCTGTAGCCAAGGTGCCGGTATGGATGTGCCAATGCCGAA
>Cyan7425_0305 Score=36.1 Pos=-340 [Cyanothece sp. PCC 7425]
AGTCCCGAAAAGGCAACTTGCTCCGAAAGGGTAAGACGCAAATTGGTAATCCTGTAGCCAGGGTGTCGGTATGGATGTGTCAATGCCGAA
>Cyan7425_5459 Score=32.8 Pos=-301 [Cyanothece sp. PCC 7425]
AGTCCCGAAAAAGCAACTTACTCCGAAAGGGTAGGGCGCAAATTGGTAAGCCTGCAGCCAGGGTATCGGTATGGCTGTGCCAATGCCGAA
>Cyan7425_0032 Score=35.8 Pos=-431 [Cyanothece sp. PCC 7425]
TCCCGAAAAGGCAACTTGCTCCGAAAGGGTAAGACGCAAATTGGTAATCCTGCAGCCAGGGTGTCGGTATGGATGTGTCAATGCCGAAGG
>Cyan7425_2124 Score=36 Pos=-199 [Cyanothece sp. PCC 7425]
TCCCGAAAAGGCAACTTGTTCCGAAAGGACAAGACGCAAATTAGGAGTCCTGTAGCCAACCTTTGATTGCGGTATGGACAGCACTAATGCCGAAGG
# RNA - ydaO-yuaA
>Cyan7425_4306(PF00582) Score=54.5 Pos=-264 [Cyanothece sp. PCC 7425]
TCGAACAAGTCAGCCTAGTTTACTGGCAACTCATGCTGGTAGAGCGGGGAAACCACCAAAGGGGCGTATTTCCAAGTTCTGTATACCCAATTGAGGGTACTTGGAGAAGGACATCTCTCAGTCCTAGCCCGTCAGCTAACCTCGTCGGCCTTGAGAGGAGACTGA
>Cyan7425_5261(COG1055) Score=65.8 Pos=-280 [Cyanothece sp. PCC 7425]
TAATCCGTCAGCCTAATCTGCTGTCCTGGTCGCGATCGCTATTTGCTCCCAGGGTACGTTAGAGCGGGGGAACCATTTTTTGGGGCGTATTTTCTTCAGGGTCACACTTATAGCATTTAGCTTTCACCCCGGAGAAGAAGGACATCTCTCAGTCCTAGCCCGTCAGCTAACCCCGTCGGCATCGAGAGGAGACTGAGC
# RNA - ykkC-yxkD
>Cyan7425_3256(uctB) Score=81.5 Pos=-99 [Cyanothece sp. PCC 7425]
AAAATTTAGCTTCTAGGGTTCCGATTCCCAATTTCTGTGGGGGTGCCTGGTCCGAGAGAAGCAAGCCATCTGCAGTTCCCCCACCCTGGTGTGGTTCAGATGGTGACACGGCGGGAAAAAAGCCCGGGAGAA
>Cyan7425_2306(amt1) Score=76.9 Pos=-216 [Cyanothece sp. PCC 7425]
CAGGAATGGCTTCTAGGGTTCCGGTTATCTGTGCAGTTAATGTCTGGTCCAAGAGAAGCAGCCGATTTTTAATCTCAGAAGCGTGAACAAAAATCGGTGACACGGCGGGAAAAAAGCCCGGGAGAG
# RNA - L10_leader
>Cyan7425_4011(rplJ) Score=61.6 Pos=-200 [Cyanothece sp. PCC 7425]
ACACAACTGAATCAAAAAGCCGCAGACCGCAGGTGCATTTGCTTAAATATCCTGCCGAGGTTTTACACCCTAAAGCAACGAAAAGTTGAAGCTATATAGCCTTTTCAGTTGTTGCTGTAAGACCCCGCCTGCCCTGGTTGGGGTTTTTATTTTCCCGGA
# RNA - glnA
>Cyan7425_4644(IF17) Score=50.9 Pos=-130 [Cyanothece sp. PCC 7425]
CATCGTTCATCTCCAACCGTGACTGACTGTCCAATTGACCTCAGTCCTGGAGACGGAAGTAGGGAGTCATCCCGAAGGAACGCGCC
>Cyan7425_2387(IF17) Score=50.4 Pos=-154 [Cyanothece sp. PCC 7425]
TCGTTCATCTCTCCAATTAATCCGACTTTGACAACCGGGATGGACCTCTTACAGGTGGGAGAGACGGAAGTAAGGATAATCCTGAAGGAACGCGCCTC
>Cyan7425_1393(IF17) Score=49.3 Pos=-132 [Cyanothece sp. PCC 7425]
GATCGTTCATCTCTCTAGCAACTTACCTCTGTACTTACCTCTGTATAGTTAGGCATCTGGAGAGACGGAAGTAGGGGTTTCCCCGAAGGAACGCGCC