# TF - SphR: cce_3960
>cce_1163(pstS) Score=9.7 Pos=-109 [Cyanothece sp. ATCC 51142]
CTTAATCT-(3)-TTTTACTG-(3)-TTTAACCC
>cce_1859(sphX) Score=8.8 Pos=-141 [Cyanothece sp. ATCC 51142]
CTTAATAA-(3)-GTTTAACT-(3)-CTTCATAT
>cce_0886(pstS) Score=7.5 Pos=-53 [Cyanothece sp. ATCC 51142]
GTTAGATT-(3)-CTTTAAGA-(3)-GTTTAGTT
>cce_0886(pstS) Score=6.9 Pos=-358 [Cyanothece sp. ATCC 51142]
CTTGAAAA-(3)-TATAAATA-(3)-GTTATCAT
>cce_3317(SYNPCC7002_A1357) Score=8.4 Pos=-44 [Cyanothece sp. ATCC 51142]
CTTATCTA-(3)-CTTTATTT-(3)-TTTATACT
>cce_1211(purF) Score=7.7 Pos=-143 [Cyanothece sp. ATCC 51142]
TATAATCT-(3)-GTTTTATT-(3)-GTCTATTT
>cce_4621(phoA) Score=8.7 Pos=-88 [Cyanothece sp. ATCC 51142]
TTTAAAGT-(3)-TTTAACAT-(3)-CTTTAAAT
>cce_4758(fbp) Score=8.3 Pos=-125 [Cyanothece sp. ATCC 51142]
ATTAACCT-(3)-CTGAAATT-(3)-CTAAAGTT
>cce_5183(ackA) Score=9.6 Pos=-74 [Cyanothece sp. ATCC 51142]
GTTAATTT-(3)-TTTAATCA-(3)-CTTAAAAT
>cce_4392(cce_4392) Score=8.8 Pos=20 [Cyanothece sp. ATCC 51142]
CTTTAACC-(3)-CTCAATCT-(3)-CTTAAACT
>cce_5174(ppk) Score=8.4 Pos=-70 [Cyanothece sp. ATCC 51142]
GATAAAAA-(3)-CATAAAGT-(3)-CTTAAACT
>cce_0154(ndbB) Score=7.6 Pos=-83 [Cyanothece sp. ATCC 51142]
TTTTATCT-(3)-GATAATTA-(3)-ATTAATGA
# TF - Fur: cce_2330
>cce_4533(cce_4533) Score=3.7 Pos=-118 [Cyanothece sp. ATCC 51142]
TTTGAGTTTTATTTAAAAT
>cce_0033(feoA) Score=4.5 Pos=-47 [Cyanothece sp. ATCC 51142]
GATAAGAATTATTCTTAAT
>cce_0033(feoA) Score=3.3 Pos=-298 [Cyanothece sp. ATCC 51142]
ATTAAAAAATACTGTTAAC
>cce_0660(psbD) Score=3.4 Pos=-298 [Cyanothece sp. ATCC 51142]
ATTGTAAATTTTTTGCTAA
>cce_0479(dpsA) Score=4.7 Pos=-144 [Cyanothece sp. ATCC 51142]
GATGCAATATATTCTCAAT
>cce_2632(sufA) Score=4.8 Pos=-20 [Cyanothece sp. ATCC 51142]
ATCAATAATAATTTTCAAT
>cce_4358(chlH) Score=2.7 Pos=-183 [Cyanothece sp. ATCC 51142]
AATAAATAATTTTTGTAAA
>cce_4358(chlH) Score=2.3 Pos=-138 [Cyanothece sp. ATCC 51142]
ATTTGTCAATATTTGTAAC
>cce_3801(afuC) Score=4.2 Pos=-163 [Cyanothece sp. ATCC 51142]
ATTGAAAATTAATGCTAAT
>cce_0989(psaA) Score=3.4 Pos=-205 [Cyanothece sp. ATCC 51142]
AATTTTAATTATTGTTAAG
>cce_3809(SYNPCC7002_A2351) Score=3.2 Pos=-132 [Cyanothece sp. ATCC 51142]
GTTTTTATTTTCTGTCAAT
>cce_1977(coxB) Score=3.7 Pos=-136 [Cyanothece sp. ATCC 51142]
AATTTCAATCAATTTCAAT
>cce_0019(SYNPCC7002_A0913) Score=3.1 Pos=-75 [Cyanothece sp. ATCC 51142]
TTTTTTAATATTTTTTGAT
>cce_1944(apcF) Score=4.4 Pos=-151 [Cyanothece sp. ATCC 51142]
ATTGCTAAAATCTATAATT
>cce_3895(SYNPCC7002_G0062) Score=2.8 Pos=16 [Cyanothece sp. ATCC 51142]
GTTTAAAAATTCTTTTAGT
>cce_0892(fdx) Score=3 Pos=-29 [Cyanothece sp. ATCC 51142]
TTTCTTATAATTTCTTAAC
>cce_1785(isiA) Score=4.4 Pos=-18 [Cyanothece sp. ATCC 51142]
ATTGCAAATCTTTTTAAAT
>cce_3031(isiB) Score=4.9 Pos=-66 [Cyanothece sp. ATCC 51142]
ATTGAGAATTATTCTAAAC
>cce_2330(fur) Score=5.1 Pos=-96 [Cyanothece sp. ATCC 51142]
GTTGCTAATTATTTTCAAT
# TF - LexA: cce_1899, cce_5074
>cce_1899(lexA) Score=4.7 Pos=-32 [Cyanothece sp. ATCC 51142]
AGTACCCATGTTCT
>cce_4639(recA) Score=4.8 Pos=-47 [Cyanothece sp. ATCC 51142]
AATACTTTTGTACT
>cce_3128(SYNPCC7002_A0856) Score=3.8 Pos=-34 [Cyanothece sp. ATCC 51142]
ACTACACTTATATT
# TF - NrtR: cce_2757
>cce_2759(pncB) Score=5.9 Pos=-49 [Cyanothece sp. ATCC 51142]
TTTTGGTAAAAGTTACTATAA
>cce_3716(nadA) Score=5.8 Pos=-24 [Cyanothece sp. ATCC 51142]
TTTTGGTAAGATCAACTATAA
# TF - NtcA: cce_0461
>cce_3261(amt1) Score=3.5 Pos=-152 [Cyanothece sp. ATCC 51142]
TGTtAaggtTGTaACA
>cce_0537(SYNPCC7002_A0076) Score=4 Pos=-137 [Cyanothece sp. ATCC 51142]
TGTAAACTATGATATA
>cce_0537(SYNPCC7002_A0076) Score=4.8 Pos=-93 [Cyanothece sp. ATCC 51142]
TGTAGTCTTTGTTACA
>cce_4355(SYNPCC7002_A0077) Score=4.7 Pos=-172 [Cyanothece sp. ATCC 51142]
TGTTACAATAGCTACA
>cce_2729(SYNPCC7002_A2395) Score=4 Pos=-148 [Cyanothece sp. ATCC 51142]
TGTAACATATGATAAC
>cce_2729(SYNPCC7002_A2395) Score=4.6 Pos=-87 [Cyanothece sp. ATCC 51142]
TGTAATATTGATTACA
>cce_3327(SYNPCC7002_A1954) Score=4.7 Pos=-210 [Cyanothece sp. ATCC 51142]
TGTAGTCATAGTTACA
>cce_3327(SYNPCC7002_A1954) Score=4 Pos=-46 [Cyanothece sp. ATCC 51142]
TTTATTTTCTGTTACA
>cce_3797(cce_3797) Score=4.9 Pos=-70 [Cyanothece sp. ATCC 51142]
TGTAGCTTAATATACA
>cce_0259(gifA) Score=5.2 Pos=-95 [Cyanothece sp. ATCC 51142]
TGTAGCAAATGTTACA
>cce_4432(glnA) Score=4.5 Pos=-89 [Cyanothece sp. ATCC 51142]
AGTATCCAATTATACA
>cce_4432(glnA) Score=4 Pos=-30 [Cyanothece sp. ATCC 51142]
TGTATATATTGAAACC
>cce_1063(hupS) Score=4.8 Pos=-204 [Cyanothece sp. ATCC 51142]
TGTAAAATTTAATACA
>cce_1063(hupS) Score=3.8 Pos=-159 [Cyanothece sp. ATCC 51142]
GGTAATAATTAATAGA
>cce_0624(ndh) Score=4.7 Pos=-47 [Cyanothece sp. ATCC 51142]
TGTAACTGTAGTTACT
>cce_1223(nirA) Score=4.7 Pos=-76 [Cyanothece sp. ATCC 51142]
TGTTACATTAGCTACA
>cce_1808(nrrA) Score=4.3 Pos=-76 [Cyanothece sp. ATCC 51142]
CGTAGCCGATGTTACA
>cce_0198(ntcB) Score=4.2 Pos=-73 [Cyanothece sp. ATCC 51142]
AGTATCAATTTCTACG
>cce_3797(SYNPCC7002_A2101) Score=4.9 Pos=-70 [Cyanothece sp. ATCC 51142]
TGTAGCTTAATATACA
>cce_0267(psbA3) Score=4.4 Pos=-58 [Cyanothece sp. ATCC 51142]
GGTAATCATTGATACA
>cce_0875(rpoD) Score=4.3 Pos=-232 [Cyanothece sp. ATCC 51142]
AGTAATCAAGGCTACA
>cce_2638(gifB) Score=5.2 Pos=-144 [Cyanothece sp. ATCC 51142]
TGTAACAATAGATACA
>cce_1944(apcF) Score=3.8 Pos=-177 [Cyanothece sp. ATCC 51142]
TGTGATAAGAAATACA
>cce_2390(trxQ) Score=3.7 Pos=-332 [Cyanothece sp. ATCC 51142]
AATAGCTATAATTACT
>cce_3633(psbZ) Score=4.2 Pos=-20 [Cyanothece sp. ATCC 51142]
TGTAACTGTATTAACA
>cce_0953(nifJ) Score=3.8 Pos=-52 [Cyanothece sp. ATCC 51142]
TGCAACAAAAATTACC
# TF - NtcB: cce_0198
>cce_1223(nirA) Score=4.7 Pos=-127 [Cyanothece sp. ATCC 51142]
ATGCAAAAAATCCAT
>cce_1223(nirA) Score=4.1 Pos=-105 [Cyanothece sp. ATCC 51142]
ATGCAAAAAACGGAT
>cce_0198(ntcB) Score=3.6 Pos=-125 [Cyanothece sp. ATCC 51142]
AGACAAAAACTCCAT
>cce_1304(psbL) Score=4.2 Pos=-31 [Cyanothece sp. ATCC 51142]
ATGCAGTTTATTCAA
>cce_0893(psbM) Score=4.2 Pos=-247 [Cyanothece sp. ATCC 51142]
ATGTGGAACCTGCAT
>cce_1062(yrdC) Score=4.4 Pos=-69 [Cyanothece sp. ATCC 51142]
ATGCGTTTTTTGTAT
# TF - Zur: cce_2881, cce_4859
>cce_1484(cce_1484) Score=6.7 Pos=-40 [Cyanothece sp. ATCC 51142]
ACTAGAATGATTATCATTATCAT
>cce_1485(cce_1485) Score=6.7 Pos=-31 [Cyanothece sp. ATCC 51142]
ATGATAATGATAATCATTCTAGT
>cce_4845(hisI2) Score=5.4 Pos=-37 [Cyanothece sp. ATCC 51142]
ATGATAATGATTATCAAAATTGA
>cce_4835(thrS2) Score=6.3 Pos=28 [Cyanothece sp. ATCC 51142]
ATGATAATGATTATTATTACAAT
>cce_1495(thrS2) Score=6.7 Pos=81 [Cyanothece sp. ATCC 51142]
TTGATAATGATTATCATTTTTAT
>cce_1495(thrS2) Score=6.9 Pos=127 [Cyanothece sp. ATCC 51142]
ATAATAATGATTATCATTTTTAT
>cce_4834(yciC) Score=6.3 Pos=-80 [Cyanothece sp. ATCC 51142]
ATTGTAATAATAATCATTATCAT
>cce_4834(yciC) Score=5.3 Pos=-52 [Cyanothece sp. ATCC 51142]
CGTAAATTGATAATCATTATCAA
>cce_4833(yciC) Score=5.6 Pos=-46 [Cyanothece sp. ATCC 51142]
TTAAGAACGATTATCGTTATAGT
>cce_1501(folE2) Score=5.4 Pos=-43 [Cyanothece sp. ATCC 51142]
TTGAGAACGATTATCATTTTATC
>cce_1489(hemB2) Score=7.1 Pos=-78 [Cyanothece sp. ATCC 51142]
ATAATAATGATTATCATTATTAT
>cce_1489(hemB2) Score=5.9 Pos=-32 [Cyanothece sp. ATCC 51142]
ATAATAATGATTATCGTTTCTAA
>cce_4852(hemB2) Score=6 Pos=-72 [Cyanothece sp. ATCC 51142]
TAAATAATAATAATCATTCTCGT
>cce_4852(hemB2) Score=6.6 Pos=-46 [Cyanothece sp. ATCC 51142]
ATAATAATGATTATCATTTTGAT
>cce_4863(PF07992) Score=6.4 Pos=-62 [Cyanothece sp. ATCC 51142]
ATTAAAATGATAACCATTATTAT
>cce_4863(PF07992) Score=6.1 Pos=-36 [Cyanothece sp. ATCC 51142]
ATGAGAATGATTATCGTTAATTT
>cce_1488(yciC2) Score=6.1 Pos=-77 [Cyanothece sp. ATCC 51142]
TTGAGAATGATTATTATTCTTAA
>cce_1488(yciC2) Score=6.2 Pos=-38 [Cyanothece sp. ATCC 51142]
ATGAAAATGATTATCATTTTAGA
>cce_4857(yciC2) Score=5.8 Pos=-50 [Cyanothece sp. ATCC 51142]
ATGAGATCAATTATCATTATCAT
>cce_4862(znuA) Score=6.1 Pos=-72 [Cyanothece sp. ATCC 51142]
AAATTAACGATAATCATTCTCAT
>cce_4862(znuA) Score=6.4 Pos=-46 [Cyanothece sp. ATCC 51142]
ATAATAATGGTTATCATTTTAAT
>cce_2961(znuA) Score=5.6 Pos=-79 [Cyanothece sp. ATCC 51142]
TTAATAGTGATAATGATTCTTAT
>cce_4859(zur) Score=6 Pos=-120 [Cyanothece sp. ATCC 51142]
ATAATAATGATTATTATTCTACA
>cce_1494(alr1197) Score=4.7 Pos=-6 [Cyanothece sp. ATCC 51142]
CTAACAATGATTACTGTAATTAT
# TF - SufR: cce_0683
>cce_0953(nifJ) Score=5.6 Pos=-133 [Cyanothece sp. ATCC 51142]
AAAAACAACCCTAATGTTGTGTTA
>cce_0685(sufB) Score=4.8 Pos=-155 [Cyanothece sp. ATCC 51142]
TTTGACAACAATTGAGTTGTTAAT
>cce_0685(sufB) Score=5.8 Pos=-115 [Cyanothece sp. ATCC 51142]
TAAAGAAACATAAATGTTGTTTTA
>cce_1005(sufD) Score=5.8 Pos=-137 [Cyanothece sp. ATCC 51142]
TTTAACAACATTTTTGTTGCTAAA
>cce_0683(sufR) Score=5.7 Pos=-109 [Cyanothece sp. ATCC 51142]
ATTAACAACTCAATTGTTGTCAAA
>cce_0683(sufR) Score=5.7 Pos=-149 [Cyanothece sp. ATCC 51142]
TAAAACAACATTTATGTTTCTTTA
# TF - Crp: cce_1423
>cce_0927(serS) Score=4 Pos=-170 [Cyanothece sp. ATCC 51142]
GTTGATAAAGTTCATA
>cce_4424(murF) Score=5.1 Pos=-83 [Cyanothece sp. ATCC 51142]
TGTGATCTTGATCACA
>cce_0800(ackA) Score=3.6 Pos=-23 [Cyanothece sp. ATCC 51142]
CATGATTTTATTCAGA
>cce_0244(cce_0244) Score=4.6 Pos=-138 [Cyanothece sp. ATCC 51142]
GGTGATTTAAGTCATC
>cce_0683(sufR) Score=3.9 Pos=-95 [Cyanothece sp. ATCC 51142]
TGTTGTCAAAGTCACA
>cce_3288(SYNPCC7002_A0687) Score=3.8 Pos=-137 [Cyanothece sp. ATCC 51142]
TTTGACTTAAATAACC
>cce_1977(coxB) Score=3.7 Pos=-78 [Cyanothece sp. ATCC 51142]
TGTGATAAAAAAGCCA
>cce_3647(SYNPCC7002_A1600) Score=4.4 Pos=-48 [Cyanothece sp. ATCC 51142]
TCTGACTGAAATCACA
>cce_0554(nifB) Score=4 Pos=-123 [Cyanothece sp. ATCC 51142]
GGTGGTATAAATGACA
>cce_0567(nifK2) Score=4.2 Pos=12 [Cyanothece sp. ATCC 51142]
ACTGATAATAATCCCA
>cce_0568(nifW) Score=4.2 Pos=-221 [Cyanothece sp. ATCC 51142]
ACTGATAATAATCCCA
>cce_0568(nifW) Score=4.1 Pos=-53 [Cyanothece sp. ATCC 51142]
CGTGAGTTAGATCAAC
>cce_2365(sll1708) Score=3.8 Pos=-1 [Cyanothece sp. ATCC 51142]
GGTGAATTTAAGCATG
>cce_2512(slr1503) Score=4.1 Pos=-72 [Cyanothece sp. ATCC 51142]
TGTGAGTTTTGTCACG
>cce_4329(ppa) Score=4.5 Pos=-265 [Cyanothece sp. ATCC 51142]
TGTGATTATTATCAAA
>cce_4329(ppa) Score=4.4 Pos=-104 [Cyanothece sp. ATCC 51142]
TGTGATTATTATCAAC
>cce_2911(apcC) Score=4.1 Pos=5 [Cyanothece sp. ATCC 51142]
AATGTTTAAAGTCACC
>cce_3687(rlpA) Score=4 Pos=-215 [Cyanothece sp. ATCC 51142]
TGTTAACTAGATCACA
# TF - CcmR: cce_3731
>cce_1689(bicA) Score=5 Pos=-200 [Cyanothece sp. ATCC 51142]
ATAGAATCTAGTCTAT
>cce_0305(cmpA) Score=4.9 Pos=-299 [Cyanothece sp. ATCC 51142]
ATAGATAAATACCTAT
>cce_1689(bicA) Score=4.5 Pos=-232 [Cyanothece sp. ATCC 51142]
ATAGTAATTAGCCTAT
>cce_3974(glpX) Score=5 Pos=-74 [Cyanothece sp. ATCC 51142]
ATAGACTTTTGACTAA
>cce_0603(ndhF3) Score=5.5 Pos=-74 [Cyanothece sp. ATCC 51142]
ATAGACTTAATTCTAT
>cce_3731(ccmR) Score=4.8 Pos=-101 [Cyanothece sp. ATCC 51142]
ATGGAAATAAGTCTAT
>cce_3731(ccmR) Score=4.3 Pos=-133 [Cyanothece sp. ATCC 51142]
ATAGATTTATTTCAAC
>cce_2939(sbtA) Score=4 Pos=-181 [Cyanothece sp. ATCC 51142]
ATAGATCGATATATAT
>cce_2937(sbtB) Score=4.5 Pos=-52 [Cyanothece sp. ATCC 51142]
ATAGATTTTTGTCTTA
>cce_2494(mnhD) Score=5.1 Pos=-180 [Cyanothece sp. ATCC 51142]
ATTGATTTTAGGCTAT
# TF - HrcA: cce_1388
>cce_3330(groEL2) Score=10.2 Pos=-114 [Cyanothece sp. ATCC 51142]
TTAGCACTC---------GAGTGCTAA
>cce_0796(SYNPCC7002_A0107) Score=9.4 Pos=-108 [Cyanothece sp. ATCC 51142]
TTAGCACTC---------AAGTGCTAA
>cce_1343(groES) Score=10.2 Pos=-79 [Cyanothece sp. ATCC 51142]
TTAGCACTC---------GAGTGCTAA
# TF - PerR: cce_3127
>cce_3126(ahpC) Score=5.8 Pos=-63 [Cyanothece sp. ATCC 51142]
TAAGAATTATTCTGA
>cce_3031(isiB) Score=5.7 Pos=-64 [Cyanothece sp. ATCC 51142]
TGAGAATTATTCTAA
>cce_3127(perR) Score=5.6 Pos=-134 [Cyanothece sp. ATCC 51142]
TCAGAATAATTCTTA
# TF - PedR: cce_4720
>cce_2950(slr1957) Score=4.5 Pos=-166 [Cyanothece sp. ATCC 51142]
AAGCATATCTACTT
>cce_3522(ndhD) Score=4.2 Pos=-19 [Cyanothece sp. ATCC 51142]
GAGTATTTATTCCT
>cce_4534(chlN) Score=4.9 Pos=-365 [Cyanothece sp. ATCC 51142]
AAGTAAGTTTACCT
>cce_4720(pedR) Score=4.7 Pos=-29 [Cyanothece sp. ATCC 51142]
AAGTAAATGTACTA
>cce_4532(chlL) Score=4.3 Pos=-155 [Cyanothece sp. ATCC 51142]
AAGCAATTTTTCTC
# TF - PirR: cce_3753
>cce_2769(pirA) Score=5.1 Pos=-51 [Cyanothece sp. ATCC 51142]
TTGTGTCTTTTTTAGATACTT
>cce_2769(pirA) Score=5.3 Pos=-22 [Cyanothece sp. ATCC 51142]
TTGTCAATCATTTAGATACAA
>cce_2769(pirA) Score=5.3 Pos=19 [Cyanothece sp. ATCC 51142]
TTGTCTTTTATTTAAAAACAA
# RNA - TPP
>cce_3025(thiC) Score=67.8 Pos=-102 [Cyanothece sp. ATCC 51142]
TCCATAGCTAGGGGTGTCTGTGGAATTAGGCTGAGAAAAACCCTTAGAACCTGAGACTGGGTAATACCAGCGTAGGGAAGCTGTTTATAGAGGAATC
# RNA - Cobalamin
>cce_0951(hupE) Score=58.2 Pos=-217 [Cyanothece sp. ATCC 51142]
ATAATACTCAAGCTATCGGTTTTAGTGGGGAACAGTCACTAAAGGTAACAGGGAAAGCTTGGTGTAAGTCCAACACTGTCCCGCAACTGTGATGAAGCTTAAATGATTAGTTTCTAAGTCAGAATGCCTGCCGATAACGAGACTATTCTTAT
>cce_4820 Score=55.3 Pos=-298 [Cyanothece sp. ATCC 51142]
ACAATGCAAAAAATATCGGTTCTAGTGGAGATCAGCCATTAGAGGTAACGGGGAAAGTTCGGTGTAAATCCGTCGCTGTCCCGCAACTGTGATGAGACGTTTCAACTTCTCTTAGTCAGAATGCCCGCCGGTTAATTAATCCACGTTCA
# TF - ArsR: cce_3556
>cce_3556(arsR) Score=4.1 Pos=-99 [Cyanothece sp. ATCC 51142]
ATTATGATTAATTGAT
>cce_3000(arsB) Score=5.5 Pos=-40 [Cyanothece sp. ATCC 51142]
ATCAAATTAATTTGAT
>cce_3000(arsB) Score=6 Pos=-11 [Cyanothece sp. ATCC 51142]
ATCAAGTTTTTTTGAT
# RNA - L10_leader
>cce_0224(rplJ) Score=69.2 Pos=-196 [Cyanothece sp. ATCC 51142]
AAATAAACTTTGGTTTATGCCGAAGACAGCAGGAGCAGAACTTGCTTAAATATCCTGCCGAGGTTGAAGCCTGAAGCCATAAAACCCAGAAAAATAGTAGGTTTTGCCAACTATTTTTGTGATGGGATT
# RNA - glnA
>cce_2638(IF17) Score=50 Pos=-117 [Cyanothece sp. ATCC 51142]
AATCGTTCATCCTTTCCAGCAGACATTCATCAACAATGGAGGGACGGAAGTAAGGATTTTTCCTGAAGGAACGCGCC
>cce_1045(cce_1045) Score=55.5 Pos=-95 [Cyanothece sp. ATCC 51142]
TCGTTCATCTGTTGTCACCAACAGACGGAAGTAGGGAATCAATATCCCGAAGGAACGCGCCTC