# TF - BioQ: ROP_07710
>ROP_07700(bioB) Score=5.3 Pos=-88 [Rhodococcus opacus B4]
CGTGAACACCGTTCAAC
>ROP_07700(bioB) Score=5.4 Pos=-72 [Rhodococcus opacus B4]
CTTGTACGGTGTTCAAT
>ROP_07830(bioA) Score=5.7 Pos=-41 [Rhodococcus opacus B4]
CTTGAACGGTGTTCAAC
>ROP_07820(bioF) Score=5.7 Pos=-24 [Rhodococcus opacus B4]
GTTGAACACCGTTCAAG
>ROP_07710(bioQ) Score=5.4 Pos=-99 [Rhodococcus opacus B4]
ATTGAACACCGTACAAG
>ROP_07710(bioQ) Score=5.3 Pos=-83 [Rhodococcus opacus B4]
GTTGAACGGTGTTCACG
>ROP_52960(bioY) Score=5.4 Pos=-38 [Rhodococcus opacus B4]
CTTGAACGTCGTTCAAG
>ROP_53000(bioY) Score=5.4 Pos=-38 [Rhodococcus opacus B4]
CTTGAACGTCGTTCAAG
# TF - Rex: ROP_17260
>ROP_60930(fadD) Score=4.8 Pos=-48 [Rhodococcus opacus B4]
ATGTGATCGAATGCACAT
>ROP_33030(COG1960) Score=4.9 Pos=-108 [Rhodococcus opacus B4]
AAGTGACCGCCTTCACAT
>ROP_17260(rex) Score=5.7 Pos=-164 [Rhodococcus opacus B4]
TTGTGCATGGGTTCACAA
>ROP_62610(choD) Score=4.6 Pos=-71 [Rhodococcus opacus B4]
TTGTGGCAGTTGTCACAA
>ROP_59710(nuoA) Score=4.1 Pos=-88 [Rhodococcus opacus B4]
CTGTGGCATAACTCACAA
>ROP_52770(coxM) Score=4.7 Pos=-17 [Rhodococcus opacus B4]
TTGTGAGGTAGGTCACAA
>ROP_12860(pntAa) Score=5.1 Pos=-215 [Rhodococcus opacus B4]
CTGTGATCGGGTTCACAA
>ROP_25550(dhaS) Score=5.1 Pos=-40 [Rhodococcus opacus B4]
TTGTGACAGCCATCACAA
>ROP_64060(whiB) Score=6.1 Pos=-103 [Rhodococcus opacus B4]
TCGTGAAAGCATTCACAA
# TF - PaaR: ROP_23860
>ROP_25860(paaJ) Score=5.1 Pos=-148 [Rhodococcus opacus B4]
TTTCACCGTACGTTCGGTCGGT
>ROP_25860(paaJ) Score=5.3 Pos=-53 [Rhodococcus opacus B4]
ACCGACCGAAGATTCGGTTATT
>ROP_25820(paaA) Score=5 Pos=23 [Rhodococcus opacus B4]
ACCAACCGATCATTCGGTAATA
>ROP_25870(paaZ) Score=5.6 Pos=-127 [Rhodococcus opacus B4]
AATAACCGAATCTTCGGTCGGT
>ROP_25870(paaZ) Score=5.1 Pos=-32 [Rhodococcus opacus B4]
ACCGACCGAACGTACGGTGAAA
>ROP_23860(paaR) Score=4.6 Pos=-80 [Rhodococcus opacus B4]
CTGAACCGAACCTTCGGTCGGC
>ROP_17540(paaT) Score=5.5 Pos=-122 [Rhodococcus opacus B4]
ACCAACCGAACGTACGGTTATA
>ROP_17540(paaT) Score=5.4 Pos=-39 [Rhodococcus opacus B4]
CCTGACCGAACAATCGGTCGAG
# TF - NrdR: ROP_67760
>ROP_64920(nrdH) Score=4.2 Pos=-188 [Rhodococcus opacus B4]
TCACAACATCTCGGGT
>ROP_64920(nrdH) Score=4.9 Pos=-156 [Rhodococcus opacus B4]
CCACTAGGTGTAGTGT
# TF - AnsR: ROP_43710
>ROP_43710(ansR) Score=5.9 Pos=4 [Rhodococcus opacus B4]
ACCTGTCAGACAGCT
>ROP_43710(ansR) Score=5.7 Pos=-103 [Rhodococcus opacus B4]
GGCTGTCAGACAGGT
>ROP_43700(aspA) Score=5.9 Pos=-239 [Rhodococcus opacus B4]
AGCTGTCTGACAGGT
>ROP_43700(aspA) Score=5.7 Pos=-132 [Rhodococcus opacus B4]
ACCTGTCTGACAGCC
# TF - Mce2R: ROP_07730
>ROP_07730(mce2R) Score=5.6 Pos=-53 [Rhodococcus opacus B4]
CGCACTGGTAAGACCACTTGA
# TF - Nfa3720: ROP_66420
>ROP_66420(Nfa3720) Score=7 Pos=-51 [Rhodococcus opacus B4]
TATGGTTCATTACATGAGTAATGAACCGAT
# TF - RER_29210: ROP_68690
>ROP_68690(RER_29210) Score=5.2 Pos=-21 [Rhodococcus opacus B4]
TTGTTTGCATAGAATGCAAACAT
# TF - PdxR3: ROP_56250, ROP_64330
>ROP_65020(COG2364) Score=3.6 Pos=-160 [Rhodococcus opacus B4]
GGTCCAGTAACGCCGACATGGCTA
>ROP_56230(COG0350) Score=4 Pos=-137 [Rhodococcus opacus B4]
AGTCCAGAAGATCCGGACTGGACC
>ROP_56250(pdxR3) Score=4 Pos=-239 [Rhodococcus opacus B4]
GGTCCAGTCCGGATCTTCTGGACT
>ROP_56250(pdxR3) Score=4.1 Pos=-29 [Rhodococcus opacus B4]
TAGCCAAGGGGGTGATACTGGACT
>ROP_65020(COG2364) Score=3.5 Pos=-238 [Rhodococcus opacus B4]
ACGCCGGCTTCACGGAGGTGGCAC
>ROP_64330(pdxR3) Score=3.2 Pos=-200 [Rhodococcus opacus B4]
CGGCCAGCCGTTGTATCGCGGGCT
# TF - Nfa20840: ROP_14220
>ROP_14220(Nfa20840) Score=3.5 Pos=-318 [Rhodococcus opacus B4]
GATGGTGTGAACATCCCG
>ROP_14230(Arth_3542-3) Score=4.8 Pos=-56 [Rhodococcus opacus B4]
TTTGTTGCATACAATATG
>ROP_14220(Nfa20840) Score=4.8 Pos=-26 [Rhodococcus opacus B4]
CATATTGTATGCAACAAA
>ROP_14220(Nfa20840) Score=4.3 Pos=-37 [Rhodococcus opacus B4]
ATTGGTGTATACATATTG
>ROP_14230(Arth_3542-3) Score=4.3 Pos=-45 [Rhodococcus opacus B4]
CAATATGTATACACCAAT
>ROP_14210(Arth_3540-2) Score=5.6 Pos=-105 [Rhodococcus opacus B4]
CGTCTTGTATACAGCAAG
>ROP_14200(Arth_3539) Score=5.6 Pos=-114 [Rhodococcus opacus B4]
CTTGCTGTATACAAGACG
# TF - ROP_32700: ROP_32700
>ROP_32700(ROP_32700) Score=3.6 Pos=-79 [Rhodococcus opacus B4]
GATCGTTTAACATGG
>ROP_32700(ROP_32700) Score=5.5 Pos=-111 [Rhodococcus opacus B4]
AATCGTTCAACGATC
>ROP_32690(COG2814) Score=5.5 Pos=-58 [Rhodococcus opacus B4]
GATCGTTGAACGATT
>ROP_32690(COG2814) Score=3.6 Pos=-90 [Rhodococcus opacus B4]
CCATGTTAAACGATC
# TF - LldR: ROP_32710
>ROP_32710(lldR) Score=6.2 Pos=-56 [Rhodococcus opacus B4]
TGTGGTCTGACCACA
>ROP_32710(lldR) Score=6.2 Pos=-32 [Rhodococcus opacus B4]
TGTGGTCAGACCACA
>ROP_32720(lldE) Score=6.2 Pos=-62 [Rhodococcus opacus B4]
TGTGGTCTGACCACA
>ROP_32720(lldE) Score=6.2 Pos=-38 [Rhodococcus opacus B4]
TGTGGTCAGACCACA
# TF - PhnF: ROP_66370
>ROP_66370(phnF) Score=6 Pos=-92 [Rhodococcus opacus B4]
ATTGGTATAGACCATT
>ROP_66370(phnF) Score=5.7 Pos=-139 [Rhodococcus opacus B4]
TTTGGTCTAGACCAGT
>ROP_66360(phnS) Score=6 Pos=-107 [Rhodococcus opacus B4]
AATGGTCTATACCAAT
>ROP_66360(phnS) Score=5.7 Pos=-60 [Rhodococcus opacus B4]
ACTGGTCTAGACCAAA
# TF - IolR: ROP_10650
>ROP_10650(iolR) Score=3.3 Pos=-123 [Rhodococcus opacus B4]
CTCCTGTCAAGACTTTGT
>ROP_10650(iolR) Score=5.2 Pos=-112 [Rhodococcus opacus B4]
ACTTTGTCCTGACATTAT
>ROP_36840(iolG3) Score=5 Pos=-89 [Rhodococcus opacus B4]
ACTTTGTCCGCACAAACG
>ROP_10630(iolTA) Score=5.1 Pos=-104 [Rhodococcus opacus B4]
CTAATGTCCAGACAAACT
>ROP_03440(oxiA) Score=4.3 Pos=-26 [Rhodococcus opacus B4]
CGAATGTCTTAACATATA
>ROP_37590(iolT) Score=4.9 Pos=-37 [Rhodococcus opacus B4]
GCTTTGTCCGGACATAAA
>ROP_10660(iolC) Score=5.2 Pos=-109 [Rhodococcus opacus B4]
ATAATGTCAGGACAAAGT
>ROP_10660(iolC) Score=3.3 Pos=-98 [Rhodococcus opacus B4]
ACAAAGTCTTGACAGGAG
# TF - NrtR: ROP_15940
>ROP_15920(pnuC) Score=5.3 Pos=-30 [Rhodococcus opacus B4]
TTGTAGTCACTACGACTACAA
>ROP_15920(pnuC) Score=5.2 Pos=-64 [Rhodococcus opacus B4]
TTGTAGTCATATCGACTACAA
# TF - TauR: ROP_33420
>ROP_33900(thiG) Score=8.1 Pos=-92 [Rhodococcus opacus B4]
CTGGACCTAT--------------GTGGCTCTGA
>ROP_33850(gabP) Score=8.8 Pos=-205 [Rhodococcus opacus B4]
CTGGACCTCA--------------CTGGCACTGT
>ROP_33400(tpa) Score=9.1 Pos=-90 [Rhodococcus opacus B4]
CTGGACCCAT--------------CTGGTTCTGA
>ROP_33410(ald) Score=8.9 Pos=-127 [Rhodococcus opacus B4]
CTGGTCCCCG--------------CTGGTCCTTC
>ROP_33570(gabP) Score=8.5 Pos=-126 [Rhodococcus opacus B4]
CTGGTTCCTG--------------CTGGCTCTGG
# TF - HrcA: ROP_09680
>ROP_62490(groS) Score=7 Pos=-150 [Rhodococcus opacus B4]
TTGGCACTCTCACGTATAGAGTGCCAA
>ROP_18630(groL2) Score=6.3 Pos=-200 [Rhodococcus opacus B4]
CTTGCACTCACCCTGTTCGAGTGCTAA
>ROP_18630(groL2) Score=6.9 Pos=-165 [Rhodococcus opacus B4]
TTGGCACTCGCCGCGGGTGAGTGCCAG
>ROP_56950(COG2331) Score=6.8 Pos=-63 [Rhodococcus opacus B4]
TTGGCACTGTCGGCTGTAGAGTGCTAA
# TF - LexA: ROP_31520, ROP_67740
>ROP_49990(alkB) Score=5.1 Pos=-37 [Rhodococcus opacus B4]
GGGAACATACGTTCGA
>ROP_67740(lexA) Score=5.2 Pos=-192 [Rhodococcus opacus B4]
TCGATCACCCGTTCGA
>ROP_67740(lexA) Score=5.1 Pos=-176 [Rhodococcus opacus B4]
AAGAACACATGTTCGA
>ROP_67740(lexA) Score=5.6 Pos=-113 [Rhodococcus opacus B4]
TCGAACAGATGTTTGA
>ROP_62860(dnaE2) Score=5.3 Pos=-90 [Rhodococcus opacus B4]
TCGAACGCCAGTTCGA
>ROP_68710(ruvC) Score=5.6 Pos=-36 [Rhodococcus opacus B4]
TCGAACAGCTGTTCGG
>ROP_62720(nfa9050) Score=5.1 Pos=-100 [Rhodococcus opacus B4]
TCGAAAATACGTTCGA
>ROP_10970(dinB) Score=5.3 Pos=-14 [Rhodococcus opacus B4]
GCGAACATATGTTCGT
>ROP_67510(recA) Score=5 Pos=-110 [Rhodococcus opacus B4]
TCGAACACACGTTCCC
# TF - ArgR: ROP_06820
>ROP_06870(argC) Score=6 Pos=-27 [Rhodococcus opacus B4]
CTTGCATGATGATGCATA
# TF - HutC: ROP_47420
>ROP_47410(gdh) Score=4.7 Pos=-90 [Rhodococcus opacus B4]
AGTCCTGTATAGACAACCCC
>ROP_47400(COG1457) Score=4.7 Pos=-134 [Rhodococcus opacus B4]
GGGGTTGTCTATACAGGACT
# TF - PdxR2: ROP_09570
>ROP_09560(pdxO) Score=11.1 Pos=-24 [Rhodococcus opacus B4]
ACTGGTCTGC-(13)-TGTGGATCTG-(4)-CCGAACCACA
# TF - Nfa21130: ROP_51330
>ROP_51340(pcaC) Score=9.2 Pos=-69 [Rhodococcus opacus B4]
GAATTGGCCCAA------------GAATTGAACCAC
# TF - DasR: ROP_12560
>ROP_12530(nagE) Score=5.9 Pos=-140 [Rhodococcus opacus B4]
ACTGGTTATGACCGGA
>ROP_12540(nagE_B) Score=5.9 Pos=-123 [Rhodococcus opacus B4]
TCCGGTCATAACCAGT
# TF - Zur: ROP_09430
>ROP_56820(yciC) Score=5.8 Pos=-56 [Rhodococcus opacus B4]
TGATGACAATCATTTTCGACA
>ROP_04730(rpmJ2) Score=5.8 Pos=-30 [Rhodococcus opacus B4]
TAACGACAATCGTTTTCAATA
>ROP_56810(rpmB2) Score=5.7 Pos=-116 [Rhodococcus opacus B4]
TTTCGATAACGATTGTCATTA
>ROP_56810(rpmB2) Score=5.8 Pos=-62 [Rhodococcus opacus B4]
TGTCGAAAATGATTGTCATCA
>ROP_22700(znuB2) Score=5.7 Pos=-31 [Rhodococcus opacus B4]
TTACGACAATCATTATCGTTA
>ROP_22730(nfa23280) Score=4.6 Pos=-47 [Rhodococcus opacus B4]
CTTTGACAACCGTTTGCAAAA
>ROP_44070(znuA) Score=5 Pos=-28 [Rhodococcus opacus B4]
CAACGGTAACGGTTTCCAATA
>ROP_22690(znuC2) Score=5.7 Pos=-8 [Rhodococcus opacus B4]
TAACGATAATGATTGTCGTAA
# TF - LtbR  : ROP_65490
>ROP_65490(ltbR) Score=5.7 Pos=-24 [Rhodococcus opacus B4]
TATGCGAGAAAGTGGTATC
>ROP_65500(leuC) Score=5.7 Pos=-133 [Rhodococcus opacus B4]
GATACCACTTTCTCGCATA
# TF - AmtR: ROP_68870
>ROP_68870(amtR) Score=7.2 Pos=-171 [Rhodococcus opacus B4]
AATATCTGTCGATCGATAGTTTTC
>ROP_68880(uctT) Score=6.9 Pos=-47 [Rhodococcus opacus B4]
GAAAACTATCGATCGACAGATATT
# TF - PaaR: ROP_23860
>ROP_17540(paaT) Score=5.7 Pos=-122 [Rhodococcus opacus B4]
ACCAACCGAACGTACGGTTATA
>ROP_17540(paaT) Score=5.4 Pos=-39 [Rhodococcus opacus B4]
CCTGACCGAACAATCGGTCGAG
>ROP_23860(paaR) Score=4.8 Pos=-80 [Rhodococcus opacus B4]
CTGAACCGAACCTTCGGTCGGC
>ROP_25870(paaZ) Score=5.7 Pos=-127 [Rhodococcus opacus B4]
AATAACCGAATCTTCGGTCGGT
>ROP_25870(paaZ) Score=5.4 Pos=-32 [Rhodococcus opacus B4]
ACCGACCGAACGTACGGTGAAA
>ROP_25860(paaJ) Score=5.4 Pos=-148 [Rhodococcus opacus B4]
TTTCACCGTACGTTCGGTCGGT
>ROP_25860(paaJ) Score=5.7 Pos=-53 [Rhodococcus opacus B4]
ACCGACCGAAGATTCGGTTATT
# TF - CsoR: ROP_pROB01-02370, ROP_33320
>ROP_pROB01-02400(copZ) Score=5.3 Pos=-82 [Rhodococcus opacus B4]
ATACGGTAGGGGGGTAT
>ROP_pROB01-02370(csoR) Score=4.9 Pos=-61 [Rhodococcus opacus B4]
ATACCCCGGGCGGGCAT
# TF - AcnR: ROP_69940
>ROP_62970(icd) Score=5.2 Pos=-147 [Rhodococcus opacus B4]
CAGTACGCTTGTCTTG
>ROP_69950(acnA) Score=5.8 Pos=-158 [Rhodococcus opacus B4]
CAGGACAAGCGTACTG
# TF - ArsR: ROP_29950, ROP_00150
>ROP_00150(arsR) Score=7.2 Pos=-13 [Rhodococcus opacus B4]
TCAATATCGACGTATGTCGA
>ROP_29950(arsR) Score=7.1 Pos=-13 [Rhodococcus opacus B4]
TCAATATCGACGCATGTCGA
# TF - QorR: ROP_18560
>ROP_18560(qorR) Score=6.6 Pos=-66 [Rhodococcus opacus B4]
GCACTAATTTTTCGTAAGTGC
>ROP_18550(qorB) Score=6.6 Pos=-78 [Rhodococcus opacus B4]
GCACTTACGAAAAATTAGTGC
# TF - Rex: ROP_17260
>ROP_62610(choD) Score=5.9 Pos=-71 [Rhodococcus opacus B4]
TTGTGGCAGTTGTCACAA
>ROP_25550(dhaS) Score=5.4 Pos=-40 [Rhodococcus opacus B4]
TTGTGACAGCCATCACAA
>ROP_64060(whiB) Score=6.3 Pos=-103 [Rhodococcus opacus B4]
TCGTGAAAGCATTCACAA
>ROP_12860(pntAa) Score=4.7 Pos=-215 [Rhodococcus opacus B4]
CTGTGATCGGGTTCACAA
>ROP_59710(nuoA) Score=3.9 Pos=-88 [Rhodococcus opacus B4]
CTGTGGCATAACTCACAA
>ROP_17430(fadD) Score=5.2 Pos=-9 [Rhodococcus opacus B4]
CTGTGACTGGTGTCACAA
>ROP_17260(rex) Score=5.8 Pos=-164 [Rhodococcus opacus B4]
TTGTGCATGGGTTCACAA
>ROP_52770(coxM) Score=4.4 Pos=-17 [Rhodococcus opacus B4]
TTGTGAGGTAGGTCACAA
# TF - BioQ: ROP_07710
>ROP_07820(bioF) Score=6.1 Pos=-24 [Rhodococcus opacus B4]
GTTGAACACCGTTCAAG
>ROP_07830(bioA) Score=6.1 Pos=-41 [Rhodococcus opacus B4]
CTTGAACGGTGTTCAAC
>ROP_07700(bioB) Score=5.9 Pos=-88 [Rhodococcus opacus B4]
CGTGAACACCGTTCAAC
>ROP_07700(bioB) Score=5.1 Pos=-72 [Rhodococcus opacus B4]
CTTGTACGGTGTTCAAT
>ROP_07710(bioQ) Score=5.5 Pos=-99 [Rhodococcus opacus B4]
ATTGAACACCGTACAAG
>ROP_07710(bioQ) Score=5.8 Pos=-83 [Rhodococcus opacus B4]
GTTGAACGGTGTTCACG
>ROP_53000(bioY) Score=5.7 Pos=-38 [Rhodococcus opacus B4]
CTTGAACGTCGTTCAAG
>ROP_52960(bioY) Score=5.7 Pos=-38 [Rhodococcus opacus B4]
CTTGAACGTCGTTCAAG
# TF - MntR: ROP_66910
>ROP_70570(mntC) Score=5.5 Pos=-52 [Rhodococcus opacus B4]
TGGTTTCGGTGAACCGAACATT
>ROP_51290(mntH) Score=5.3 Pos=-78 [Rhodococcus opacus B4]
AAAGTTCGTGGTACCTAAATCT
>ROP_38900(sodA) Score=5.8 Pos=-189 [Rhodococcus opacus B4]
TTTTTTCGGGTGCCCGAACTTT