# TF - BioQ: RER_34890
>RER_34880(bioB) Score=5.3 Pos=-58 [Rhodococcus erythropolis PR4]
CGTGAACACCGTTCAAC
>RER_34880(bioB) Score=5.4 Pos=-42 [Rhodococcus erythropolis PR4]
CTTGTACGGTGTTCAAT
>RER_35050(bioA) Score=5.7 Pos=-37 [Rhodococcus erythropolis PR4]
CTTGAACACCGTTCAAC
>RER_35040(bioF) Score=5.7 Pos=-18 [Rhodococcus erythropolis PR4]
GTTGAACGGTGTTCAAG
>RER_34890(bioQ) Score=5.4 Pos=-124 [Rhodococcus erythropolis PR4]
ATTGAACACCGTACAAG
>RER_34890(bioQ) Score=5.3 Pos=-108 [Rhodococcus erythropolis PR4]
GTTGAACGGTGTTCACG
# TF - Rex: RER_16400
>RER_40980(fadD) Score=4.5 Pos=-51 [Rhodococcus erythropolis PR4]
ATGTGATGCAATGCACAT
>RER_16400(rex) Score=4.1 Pos=-219 [Rhodococcus erythropolis PR4]
TCGTGACGATTTACGCAA
>RER_16400(rex) Score=5.7 Pos=-127 [Rhodococcus erythropolis PR4]
TTGTGCATGGGTTCACAA
>RER_19350(choD) Score=4.5 Pos=-69 [Rhodococcus erythropolis PR4]
TTGTGGTGGTAGTCACAA
>RER_21900(whiB) Score=6.1 Pos=-106 [Rhodococcus erythropolis PR4]
TCGTGAAAGCATTCACAA
# TF - PaaR: RER_55540
>RER_55540(paaR) Score=5.9 Pos=-80 [Rhodococcus erythropolis PR4]
AATAACCGAACATTCGGTCGTT
>RER_55550(paaZ) Score=5.4 Pos=-32 [Rhodococcus erythropolis PR4]
ACCGACCGAACGTACGGTGAGA
>RER_55530(paaF) Score=5.7 Pos=29 [Rhodococcus erythropolis PR4]
AACGACCGAATGTTCGGTTATT
>RER_55500(paaA) Score=5 Pos=-35 [Rhodococcus erythropolis PR4]
ACCAACCGATCATTCGGTAATA
>RER_44780(paaT) Score=4.6 Pos=-178 [Rhodococcus erythropolis PR4]
ACCTACCGATCATTCGGTTGCC
# TF - NrdR: RER_27780
>RER_23500(nrdH) Score=4.9 Pos=-133 [Rhodococcus erythropolis PR4]
CCACTAGGTGTAGTGT
>RER_23500(nrdH) Score=3.7 Pos=-165 [Rhodococcus erythropolis PR4]
TCACAACATCTCGCGT
# TF - AnsR: RER_56370
>RER_56370(ansR) Score=5.7 Pos=-104 [Rhodococcus erythropolis PR4]
GGCTGTCTGACAGGT
>RER_56370(ansR) Score=5.9 Pos=4 [Rhodococcus erythropolis PR4]
ACCTGTCAGACAGCT
>RER_56380(aspA) Score=5.7 Pos=-127 [Rhodococcus erythropolis PR4]
ACCTGTCAGACAGCC
>RER_56380(aspA) Score=5.9 Pos=-235 [Rhodococcus erythropolis PR4]
AGCTGTCTGACAGGT
# TF - Mce2R: RER_01500
>RER_01500(mce2R) Score=5.8 Pos=-52 [Rhodococcus erythropolis PR4]
CTAACTGGTCATACCACTTGA
# TF - Nfa3720: RER_12520
>RER_12520(Nfa3720) Score=6.6 Pos=-51 [Rhodococcus erythropolis PR4]
TATGGTTCATTACATGAGCAATGAACCAGT
# TF - RER_29210: RER_29210
>RER_29210(RER_29210) Score=5.2 Pos=-21 [Rhodococcus erythropolis PR4]
TTGTTTGCATAGAATGCAAACAT
# TF - PdxR3: RER_14310
>RER_14310(pdxR3) Score=4.7 Pos=-26 [Rhodococcus erythropolis PR4]
TAGCCAAGTTGTCGATACTGGACT
>RER_23600(COG2364) Score=3.3 Pos=-93 [Rhodococcus erythropolis PR4]
ATGCGGGCTTCACGGAAGTGGCAC
>RER_23600(COG2364) Score=4.7 Pos=-23 [Rhodococcus erythropolis PR4]
AGTCCAGTATCGACAACTTGGCTA
# TF - LldR: RER_52690
>RER_52690(lldR) Score=6.2 Pos=-76 [Rhodococcus erythropolis PR4]
TGTGGTCTGACCACA
>RER_52680(lldE) Score=6.2 Pos=-37 [Rhodococcus erythropolis PR4]
TGTGGTCAGACCACA
# TF - PhnF: RER_25650
>RER_25650(phnF) Score=5.4 Pos=-34 [Rhodococcus erythropolis PR4]
ATTGGTATAGACCGAA
>RER_25650(phnF) Score=6.1 Pos=-81 [Rhodococcus erythropolis PR4]
TTTGGTCTAGACCAAT
>RER_25640(COG0665) Score=5.4 Pos=-78 [Rhodococcus erythropolis PR4]
TTCGGTCTATACCAAT
>RER_25640(COG0665) Score=6.1 Pos=-31 [Rhodococcus erythropolis PR4]
ATTGGTCTAGACCAAA
# TF - IolR: RER_20220
>RER_20220(iolR) Score=3.5 Pos=-134 [Rhodococcus erythropolis PR4]
TGCTTGTCAAGACTGACT
>RER_20220(iolR) Score=5.2 Pos=-35 [Rhodococcus erythropolis PR4]
AGTTTGTCTGGACATTAT
>RER_20340(iolTA) Score=5 Pos=-112 [Rhodococcus erythropolis PR4]
CTAATGTCAGAACAAACT
>RER_20210(iolC) Score=3.5 Pos=-8 [Rhodococcus erythropolis PR4]
AGTCAGTCTTGACAAGCA
>RER_20210(iolC) Score=5.2 Pos=-107 [Rhodococcus erythropolis PR4]
ATAATGTCCAGACAAACT
# TF - HrcA: RER_37410
>RER_19230(groS) Score=7 Pos=-151 [Rhodococcus erythropolis PR4]
TTGGCACTCTCACGTATAGAGTGCCAA
>RER_15260(groL2) Score=6.3 Pos=-265 [Rhodococcus erythropolis PR4]
CTTGCACTCGGCACGCTCGAGTGCTAA
>RER_15260(groL2) Score=6.8 Pos=-230 [Rhodococcus erythropolis PR4]
TTGGCACTCGCGAACCGTGAGTGCCAG
>RER_43910(COG2331) Score=6.7 Pos=-81 [Rhodococcus erythropolis PR4]
TTGGCACTGTCACTTGTAGAGTGCTAA
>RER_12450(hsp18) Score=6.6 Pos=-81 [Rhodococcus erythropolis PR4]
CTGGCACTCAAGGTTGCAGAGTGCCAG
# TF - LexA: RER_53970, RER_27760
>RER_46860(alkB) Score=5.3 Pos=-28 [Rhodococcus erythropolis PR4]
GGGAACATATGTTCGA
>RER_27760(lexA) Score=5.6 Pos=-202 [Rhodococcus erythropolis PR4]
TCGAACAGATGTTTGA
>RER_19790(dnaE2) Score=5.6 Pos=-99 [Rhodococcus erythropolis PR4]
TCGAACATCAGTTCGA
>RER_29230(ruvC) Score=5.6 Pos=-35 [Rhodococcus erythropolis PR4]
TCGAACAGCTGTTCGG
>pREC1_0098(nfa9050) Score=5.5 Pos=-57 [Rhodococcus erythropolis PR4]
TCGAACATATGTGCGA
>pREL1_0107(nfa9050) Score=5.3 Pos=-24 [Rhodococcus erythropolis PR4]
TCGAACCTGTGTTCGA
>RER_37190(dinB) Score=4.9 Pos=-8 [Rhodococcus erythropolis PR4]
GGGAACATATGTTCGT
>RER_27530(recA) Score=5.4 Pos=-254 [Rhodococcus erythropolis PR4]
TCGAACACGTGTTCGT
# TF - ArgR: RER_32790
>RER_32840(argC) Score=5.8 Pos=-27 [Rhodococcus erythropolis PR4]
GATGCACAATGATGCATA
# TF - PdxQ: RER_10490
>RER_10490(pdxQ) Score=9.1 Pos=-19 [Rhodococcus erythropolis PR4]
AGCGCTACTAT---------------ATGATAGCAGT
>RER_10480(PF00155) Score=9.1 Pos=-156 [Rhodococcus erythropolis PR4]
ACTGCTATCAT---------------ATAGTAGCGCT
>RER_26220(PF00892) Score=9.1 Pos=-64 [Rhodococcus erythropolis PR4]
ACTGCTATCGT---------------AGAGTAGCGCT
# TF - HutC: RER_51240
>RER_51330(COG1457) Score=6.1 Pos=-151 [Rhodococcus erythropolis PR4]
ACGCCTGTATATACAGGCAT
>RER_51250(gdh) Score=5.2 Pos=67 [Rhodococcus erythropolis PR4]
AAACCTGTATAGACAAGTTG
>RER_51260(fadE15) Score=5.2 Pos=-174 [Rhodococcus erythropolis PR4]
CAACTTGTCTATACAGGTTT
# TF - PdxR2: RER_58480
>RER_58490(pdxO) Score=12.9 Pos=-68 [Rhodococcus erythropolis PR4]
AGTGGCCTAT-(14)-ATTGGACCAT-(4)-TGAAGCCACT
# TF - Nfa21130: RER_05310
>RER_05320(pcaC) Score=9.1 Pos=-69 [Rhodococcus erythropolis PR4]
AGATTGGCCCAT------------GGATTGAACCAT
# TF - DasR: RER_39640
>RER_39620(nagE_B) Score=5.9 Pos=-155 [Rhodococcus erythropolis PR4]
TCCGGTCATAACCAGT
>RER_39610(nagE) Score=5.9 Pos=-188 [Rhodococcus erythropolis PR4]
ACTGGTTATGACCGGA
# TF - Zur: RER_37100
>RER_44020(yciC) Score=5.5 Pos=-84 [Rhodococcus erythropolis PR4]
AGATGACAATCGTTTTCGACA
>RER_44020(yciC) Score=5.1 Pos=-30 [Rhodococcus erythropolis PR4]
TAATGACAATCATTCCCAGAA
>RER_44030(rpmB2) Score=5.5 Pos=-41 [Rhodococcus erythropolis PR4]
TGTCGAAAACGATTGTCATCT
>RER_54290(nfa23280) Score=5 Pos=-39 [Rhodococcus erythropolis PR4]
CTTTGACAATCATTTACATTA
>RER_14090(yciC3) Score=5.7 Pos=-25 [Rhodococcus erythropolis PR4]
TAATGACAATGGTTACCATTA
>RER_07030(znuA) Score=5.3 Pos=-56 [Rhodococcus erythropolis PR4]
TAACGGTAACGGTTTCCAATA
>RER_44030(rpmB2) Score=5.1 Pos=-95 [Rhodococcus erythropolis PR4]
TTCTGGGAATGATTGTCATTA
# TF - LtbR  : RER_24070
>RER_24070(ltbR) Score=5.8 Pos=-24 [Rhodococcus erythropolis PR4]
TATGCGAGAAACTGGTATC
>RER_24080(leuC) Score=5.8 Pos=-173 [Rhodococcus erythropolis PR4]
GATACCAGTTTCTCGCATA
# TF - AmtR: RER_29510
>RER_29520(uctT) Score=6.9 Pos=-58 [Rhodococcus erythropolis PR4]
GAAAACTATCAATCGACAGTTATT
>RER_29510(amtR) Score=7.1 Pos=-172 [Rhodococcus erythropolis PR4]
AATAACTGTCGATTGATAGTTTTC
# TF - PaaR: RER_55540
>RER_55540(paaR) Score=6 Pos=-80 [Rhodococcus erythropolis PR4]
AATAACCGAACATTCGGTCGTT
>RER_55550(paaZ) Score=5.6 Pos=-32 [Rhodococcus erythropolis PR4]
ACCGACCGAACGTACGGTGAGA
>RER_55500(paaA) Score=5.6 Pos=-35 [Rhodococcus erythropolis PR4]
ACCAACCGATCATTCGGTAATA
# TF - CsoR: RER_05710
>RER_43570(copZ) Score=5.2 Pos=-87 [Rhodococcus erythropolis PR4]
ATACCCCCTGGGGGTAC
>RER_05700(RER_05700) Score=5.9 Pos=-49 [Rhodococcus erythropolis PR4]
ATACCCTAGGGGGGTAT
# TF - AcnR: RER_30670
>RER_20050(icd) Score=5.2 Pos=-146 [Rhodococcus erythropolis PR4]
CAGTACGCTTGTCTTG
>RER_30680(acnA) Score=5.8 Pos=-201 [Rhodococcus erythropolis PR4]
CAGGACAAGCGTACTG
# TF - ArsR: pREL1_0158, RER_35210
>pREL1_0158(arsR) Score=6.9 Pos=-28 [Rhodococcus erythropolis PR4]
TCAATATTGATGTATGTCGA
>RER_35210(arsR) Score=6.9 Pos=-13 [Rhodococcus erythropolis PR4]
TCAATATCGAAGAATGTCGA
# TF - QorR: RER_15410
>RER_15410(qorR) Score=6.7 Pos=-69 [Rhodococcus erythropolis PR4]
GCACTTATTTTTCGTAAGTGC
>RER_15420(qorB) Score=6.7 Pos=-70 [Rhodococcus erythropolis PR4]
GCACTTACGAAAAATAAGTGC
# TF - Rex: RER_16400
>RER_19350(choD) Score=5.7 Pos=-69 [Rhodococcus erythropolis PR4]
TTGTGGTGGTAGTCACAA
>RER_21900(whiB) Score=6.3 Pos=-106 [Rhodococcus erythropolis PR4]
TCGTGAAAGCATTCACAA
>RER_16190(fadD) Score=4.5 Pos=-89 [Rhodococcus erythropolis PR4]
TTGTGACTGTCGTCACGG
>RER_16400(rex) Score=5.8 Pos=-127 [Rhodococcus erythropolis PR4]
TTGTGCATGGGTTCACAA
# TF - BioQ: RER_34890
>RER_35040(bioF) Score=6.1 Pos=-18 [Rhodococcus erythropolis PR4]
GTTGAACGGTGTTCAAG
>RER_35050(bioA) Score=6.1 Pos=-37 [Rhodococcus erythropolis PR4]
CTTGAACACCGTTCAAC
>RER_34880(bioB) Score=5.9 Pos=-58 [Rhodococcus erythropolis PR4]
CGTGAACACCGTTCAAC
>RER_34880(bioB) Score=5.1 Pos=-42 [Rhodococcus erythropolis PR4]
CTTGTACGGTGTTCAAT
>RER_34890(bioQ) Score=5.5 Pos=-124 [Rhodococcus erythropolis PR4]
ATTGAACACCGTACAAG
>RER_34890(bioQ) Score=5.8 Pos=-108 [Rhodococcus erythropolis PR4]
GTTGAACGGTGTTCACG
# TF - MntR: RER_26410
>RER_59770(mntC) Score=5.2 Pos=-55 [Rhodococcus erythropolis PR4]
ATTGTTCGGCTATACGAACTTG
>RER_51720(mntH) Score=6.1 Pos=-74 [Rhodococcus erythropolis PR4]
AAAGTTCGGCTCCCCGAACTCT
>RER_01640(sodA) Score=5.9 Pos=-191 [Rhodococcus erythropolis PR4]
TAAGTTCGGTTAACCAAACTTT